Wall clock time and date at job start Tue Mar 31 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 117.00201 * 2 1 4 4 C 1.38763 * 120.17011 * 359.97438 * 3 2 1 5 5 C 1.37839 * 119.70946 * 180.09700 * 4 3 2 6 6 C 1.38947 * 120.62719 * 359.97438 * 5 4 3 7 7 C 1.37713 * 119.76979 * 359.78663 * 6 5 4 8 8 C 1.38423 * 120.17755 * 179.97438 * 3 2 1 9 9 C 1.50639 * 122.56268 * 180.68485 * 7 6 5 10 10 C 1.52729 * 110.59602 * 342.21001 * 9 7 6 11 11 C 1.53330 * 108.37676 * 51.11880 * 10 9 7 12 12 C 1.50655 * 117.69756 * 179.74151 * 6 5 4 13 13 H 1.09007 * 109.24877 * 282.50954 * 12 6 5 14 14 C 1.52995 * 109.24968 * 41.96693 * 12 6 5 15 15 N 1.46506 * 109.47393 * 183.83087 * 14 12 6 16 16 C 1.34772 * 120.00200 * 185.31564 * 15 14 12 17 17 O 1.21687 * 120.00232 * 359.72484 * 16 15 14 18 18 C 1.46384 * 119.99698 * 180.02562 * 16 15 14 19 19 H 1.07991 * 119.99802 * 0.02562 * 18 16 15 20 20 C 1.40044 * 119.99549 * 180.02562 * 18 16 15 21 21 N 1.30671 * 120.00377 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99647 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47224 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47449 * 120.00095 * 22 20 18 25 25 H 1.48499 * 109.46646 * 239.99784 * 22 20 18 26 26 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47375 * 300.00506 * 1 2 3 28 28 H 1.09002 * 109.46748 * 60.00437 * 1 2 3 29 29 H 1.07998 * 120.14894 * 0.12133 * 4 3 2 30 30 H 1.07999 * 119.68159 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.74481 * 0.04246 * 8 3 2 32 32 H 1.09004 * 109.25287 * 102.49676 * 9 7 6 33 33 H 1.09002 * 109.25620 * 221.95719 * 9 7 6 34 34 H 1.08998 * 109.68377 * 170.83591 * 10 9 7 35 35 H 1.09000 * 109.67848 * 291.35457 * 10 9 7 36 36 H 1.08996 * 109.68095 * 170.38768 * 11 10 9 37 37 H 1.08999 * 109.67956 * 49.83147 * 11 10 9 38 38 H 1.08999 * 109.47331 * 63.83357 * 14 12 6 39 39 H 1.08994 * 109.47647 * 303.83421 * 14 12 6 40 40 H 0.97003 * 119.99362 * 5.31775 * 15 14 12 41 41 H 0.97001 * 119.99954 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2938 2.3769 -0.0005 5 6 1.9294 3.6000 -0.0026 6 6 3.3168 3.6767 -0.0035 7 6 4.0655 2.5209 0.0020 8 6 3.4281 1.2876 0.0005 9 6 5.5718 2.5307 0.0165 10 6 6.1043 3.8961 -0.4132 11 6 5.4043 4.9733 0.4238 12 6 3.9423 5.0472 -0.0118 13 1 3.8884 5.4608 -1.0189 14 6 3.1751 5.9576 0.9491 15 7 3.7215 7.3151 0.8769 16 6 3.2715 8.2682 1.7168 17 8 2.4079 8.0026 2.5319 18 6 3.8171 9.6246 1.6442 19 1 4.5798 9.8616 0.9173 20 6 3.3499 10.6148 2.5173 21 7 2.4267 10.3282 3.3965 22 14 4.0456 12.3460 2.4242 23 1 5.0707 12.4105 1.3517 24 1 2.9516 13.3036 2.1221 25 1 4.6681 12.6998 3.7252 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2150 2.3264 0.0010 30 1 1.3435 4.5072 -0.0034 31 1 4.0151 0.3810 0.0003 32 1 5.9230 2.3089 1.0243 33 1 5.9428 1.7688 -0.6691 34 1 7.1801 3.9407 -0.2433 35 1 5.8927 4.0565 -1.4704 36 1 5.8858 5.9371 0.2586 37 1 5.4597 4.7108 1.4802 38 1 3.2756 5.5793 1.9664 39 1 2.1216 5.9747 0.6703 40 1 4.4071 7.5278 0.2245 41 1 2.1034 11.0140 4.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125516323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:15 Heat of formation + Delta-G solvation = -71.312251 kcal Electronic energy + Delta-G solvation = -22521.123678 eV Core-core repulsion = 19172.186865 eV Total energy + Delta-G solvation = -3348.936813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53620 -38.85290 -37.16724 -35.39402 -33.99133 -32.46735 -31.52419 -29.81178 -29.23534 -27.07555 -26.60591 -24.89571 -23.08384 -22.34632 -21.10706 -19.59214 -19.37686 -17.73272 -17.19510 -16.34764 -15.89868 -15.74844 -15.25616 -14.76266 -14.51016 -14.42206 -14.06178 -13.79930 -13.49974 -13.11631 -12.95318 -12.70016 -12.57007 -12.27528 -12.02301 -11.99825 -11.74610 -11.29576 -11.10926 -11.09610 -10.92995 -10.81439 -10.54394 -10.41928 -10.31378 -10.15355 -10.00757 -8.83722 -8.73433 -8.00909 -7.57982 -7.44367 -6.16173 -4.61299 1.35039 1.46880 3.14145 3.17161 3.22270 3.26690 3.74117 4.12404 4.61002 4.62614 4.71877 4.82378 4.90104 4.94262 4.98421 5.01576 5.13842 5.20307 5.27937 5.31862 5.47433 5.54343 5.60037 5.67315 5.76224 5.85097 5.91765 5.96388 6.06065 6.08321 6.16130 6.34165 6.41095 6.52223 6.54086 6.68469 6.74218 6.84900 7.35482 7.45720 7.96573 8.13777 8.36175 9.05158 9.57795 10.63080 10.82193 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024385 B = 0.003419 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.956441 B = 8186.596061 C = 9134.140408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.119 3.881 4 C -0.207 4.207 5 C -0.075 4.075 6 C -0.095 4.095 7 C -0.036 4.036 8 C -0.158 4.158 9 C -0.080 4.080 10 C -0.119 4.119 11 C -0.113 4.113 12 C -0.055 4.055 13 H 0.082 0.918 14 C 0.140 3.860 15 N -0.767 5.767 16 C 0.554 3.446 17 O -0.582 6.582 18 C -0.545 4.545 19 H 0.067 0.933 20 C 0.087 3.913 21 N -0.769 5.769 22 Si 0.907 3.093 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.379 0.621 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -17.265 -9.141 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.074 3.926 4 C -0.226 4.226 5 C -0.093 4.093 6 C -0.096 4.096 7 C -0.037 4.037 8 C -0.177 4.177 9 C -0.117 4.117 10 C -0.156 4.156 11 C -0.150 4.150 12 C -0.073 4.073 13 H 0.100 0.900 14 C 0.015 3.985 15 N -0.422 5.422 16 C 0.358 3.642 17 O -0.465 6.465 18 C -0.583 4.583 19 H 0.086 0.914 20 C -0.132 4.132 21 N -0.398 5.398 22 Si 0.731 3.269 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.211 0.789 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.774 -17.602 -8.370 19.571 hybrid contribution 0.194 1.022 -0.307 1.084 sum 1.968 -16.580 -8.676 18.816 Atomic orbital electron populations 1.23020 0.78590 1.03619 1.01470 1.86028 1.21229 1.27189 1.89098 1.18880 0.92309 0.83986 0.97430 1.21162 0.99904 0.92332 1.09210 1.21176 0.94276 0.97447 0.96411 1.19454 0.93043 0.94293 1.02827 1.19382 0.95516 0.91308 0.97447 1.20306 0.91252 0.97931 1.08165 1.20487 0.90632 0.98386 1.02159 1.21564 0.99682 0.94213 1.00179 1.21587 0.94219 0.99079 1.00130 1.20225 0.95194 0.91636 1.00262 0.90020 1.20998 0.96017 0.83697 0.97777 1.46136 1.45636 1.08962 1.41504 1.18217 0.81966 0.84546 0.79459 1.90598 1.34330 1.82151 1.39387 1.20922 1.23982 0.93322 1.20025 0.91436 1.25709 0.93661 0.99976 0.93899 1.70036 1.21866 1.33433 1.14417 0.86336 0.79393 0.82417 0.78704 1.18795 1.20213 1.20207 0.88487 0.92606 0.92740 0.85632 0.85115 0.85645 0.90406 0.90870 0.91435 0.91683 0.90866 0.91382 0.92944 0.93567 0.78915 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.82 101.05 0.99 1.22 16 2 O -0.32 -3.85 10.50 -19.44 -0.20 -4.05 16 3 C 0.12 1.55 6.68 -39.32 -0.26 1.29 16 4 C -0.21 -2.69 9.04 -39.53 -0.36 -3.04 16 5 C -0.08 -1.07 9.03 -39.46 -0.36 -1.43 16 6 C -0.10 -1.36 5.43 -104.57 -0.57 -1.93 16 7 C -0.04 -0.47 5.74 -104.63 -0.60 -1.07 16 8 C -0.16 -2.00 9.55 -39.30 -0.38 -2.38 16 9 C -0.08 -0.84 5.67 -28.05 -0.16 -1.00 16 10 C -0.12 -1.26 5.98 -26.70 -0.16 -1.42 16 11 C -0.11 -1.50 4.98 -26.70 -0.13 -1.63 16 12 C -0.05 -0.80 2.29 -91.94 -0.21 -1.01 16 13 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 14 C 0.14 2.71 4.68 -4.04 -0.02 2.69 16 15 N -0.77 -17.03 5.26 -61.72 -0.32 -17.35 16 16 C 0.55 15.86 7.75 -12.99 -0.10 15.76 16 17 O -0.58 -19.08 15.01 5.20 0.08 -19.00 16 18 C -0.55 -15.45 9.54 -35.63 -0.34 -15.79 16 19 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 20 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 21 N -0.77 -23.25 11.83 55.55 0.66 -22.60 16 22 Si 0.91 20.20 29.56 -169.99 -5.02 15.18 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.43 7.67 -51.93 -0.40 0.04 16 28 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 29 H 0.13 1.36 6.33 -52.49 -0.33 1.03 16 30 H 0.13 1.87 6.26 -52.49 -0.33 1.54 16 31 H 0.13 1.38 8.05 -52.48 -0.42 0.96 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.07 0.98 7.39 -51.93 -0.38 0.59 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.05 1.13 8.13 -51.93 -0.42 0.71 16 39 H 0.05 0.93 6.22 -51.93 -0.32 0.61 16 40 H 0.38 7.33 7.72 -40.82 -0.32 7.02 16 41 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -35.12 333.61 -8.36 -43.48 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.82 Total: 6.70 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.74 Total: -7.38 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.33 Total: -39.95 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.13 Total: -23.05 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.12 -8.36 -43.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125516323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.833 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds