Wall clock time and date at job start Tue Mar 31 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 117.00201 * 2 1 4 4 C 1.38763 * 120.17011 * 359.97438 * 3 2 1 5 5 C 1.37839 * 119.70946 * 180.09700 * 4 3 2 6 6 C 1.38947 * 120.62719 * 359.97438 * 5 4 3 7 7 C 1.37713 * 119.76979 * 359.78663 * 6 5 4 8 8 C 1.38423 * 120.17755 * 179.97438 * 3 2 1 9 9 C 1.50639 * 122.56268 * 180.68485 * 7 6 5 10 10 C 1.52729 * 110.59602 * 342.21001 * 9 7 6 11 11 C 1.53330 * 108.37676 * 51.11880 * 10 9 7 12 12 C 1.50655 * 117.69756 * 179.74151 * 6 5 4 13 13 H 1.09007 * 109.24877 * 282.50954 * 12 6 5 14 14 C 1.52995 * 109.24968 * 41.96693 * 12 6 5 15 15 N 1.46506 * 109.47393 * 183.83087 * 14 12 6 16 16 C 1.34772 * 120.00200 * 185.31564 * 15 14 12 17 17 O 1.21687 * 120.00232 * 359.72484 * 16 15 14 18 18 C 1.46384 * 119.99698 * 180.02562 * 16 15 14 19 19 H 1.07991 * 119.99802 * 0.02562 * 18 16 15 20 20 C 1.40044 * 119.99549 * 180.02562 * 18 16 15 21 21 N 1.30671 * 120.00377 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99647 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47224 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47449 * 120.00095 * 22 20 18 25 25 H 1.48499 * 109.46646 * 239.99784 * 22 20 18 26 26 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47375 * 300.00506 * 1 2 3 28 28 H 1.09002 * 109.46748 * 60.00437 * 1 2 3 29 29 H 1.07998 * 120.14894 * 0.12133 * 4 3 2 30 30 H 1.07999 * 119.68159 * 179.97438 * 5 4 3 31 31 H 1.08003 * 119.74481 * 0.04246 * 8 3 2 32 32 H 1.09004 * 109.25287 * 102.49676 * 9 7 6 33 33 H 1.09002 * 109.25620 * 221.95719 * 9 7 6 34 34 H 1.08998 * 109.68377 * 170.83591 * 10 9 7 35 35 H 1.09000 * 109.67848 * 291.35457 * 10 9 7 36 36 H 1.08996 * 109.68095 * 170.38768 * 11 10 9 37 37 H 1.08999 * 109.67956 * 49.83147 * 11 10 9 38 38 H 1.08999 * 109.47331 * 63.83357 * 14 12 6 39 39 H 1.08994 * 109.47647 * 303.83421 * 14 12 6 40 40 H 0.97003 * 119.99362 * 5.31775 * 15 14 12 41 41 H 0.97001 * 119.99954 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2938 2.3769 -0.0005 5 6 1.9294 3.6000 -0.0026 6 6 3.3168 3.6767 -0.0035 7 6 4.0655 2.5209 0.0020 8 6 3.4281 1.2876 0.0005 9 6 5.5718 2.5307 0.0165 10 6 6.1043 3.8961 -0.4132 11 6 5.4043 4.9733 0.4238 12 6 3.9423 5.0472 -0.0118 13 1 3.8884 5.4608 -1.0189 14 6 3.1751 5.9576 0.9491 15 7 3.7215 7.3151 0.8769 16 6 3.2715 8.2682 1.7168 17 8 2.4079 8.0026 2.5319 18 6 3.8171 9.6246 1.6442 19 1 4.5798 9.8616 0.9173 20 6 3.3499 10.6148 2.5173 21 7 2.4267 10.3282 3.3965 22 14 4.0456 12.3460 2.4242 23 1 5.0707 12.4105 1.3517 24 1 2.9516 13.3036 2.1221 25 1 4.6681 12.6998 3.7252 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.2150 2.3264 0.0010 30 1 1.3435 4.5072 -0.0034 31 1 4.0151 0.3810 0.0003 32 1 5.9230 2.3089 1.0243 33 1 5.9428 1.7688 -0.6691 34 1 7.1801 3.9407 -0.2433 35 1 5.8927 4.0565 -1.4704 36 1 5.8858 5.9371 0.2586 37 1 5.4597 4.7108 1.4802 38 1 3.2756 5.5793 1.9664 39 1 2.1216 5.9747 0.6703 40 1 4.4071 7.5278 0.2245 41 1 2.1034 11.0140 4.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125516323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:15 Heat of formation + Delta-G solvation = -94.651860 kcal Electronic energy + Delta-G solvation = -22522.135760 eV Core-core repulsion = 19172.186865 eV Total energy + Delta-G solvation = -3349.948895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.55166 -39.96014 -39.07508 -36.59046 -35.40255 -34.54915 -33.11321 -30.85388 -30.30816 -28.67765 -27.73098 -26.44517 -24.14980 -23.34999 -22.43164 -21.55200 -20.39247 -19.22074 -18.62089 -17.51246 -17.31977 -16.91320 -16.62519 -16.06940 -15.97168 -15.77340 -15.50809 -14.97694 -14.58129 -14.45823 -14.38583 -14.05125 -13.84489 -13.42597 -13.29915 -13.11506 -12.91541 -12.85224 -12.77653 -12.58404 -12.54161 -12.03559 -11.97191 -11.74980 -11.60581 -11.32389 -11.14251 -10.93860 -9.87410 -9.72292 -9.45788 -9.02871 -8.28535 -6.84783 0.34021 0.41947 1.41038 1.41150 1.59406 2.25429 2.35143 2.48038 2.70444 3.12707 3.60589 3.68527 3.78279 3.86021 3.92017 4.06858 4.17791 4.21584 4.35107 4.36611 4.41510 4.45254 4.56703 4.64092 4.70268 4.75062 4.86615 4.93518 5.01777 5.06205 5.12806 5.14606 5.25625 5.32974 5.36424 5.48092 5.49724 5.70658 5.83107 5.88958 6.24655 6.28044 6.43306 6.87544 7.57208 8.50431 8.68510 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024385 B = 0.003419 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.956441 B = 8186.596061 C = 9134.140408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.115 3.885 4 C -0.213 4.213 5 C -0.093 4.093 6 C -0.115 4.115 7 C -0.036 4.036 8 C -0.164 4.164 9 C -0.080 4.080 10 C -0.111 4.111 11 C -0.113 4.113 12 C -0.039 4.039 13 H 0.092 0.908 14 C 0.146 3.854 15 N -0.751 5.751 16 C 0.536 3.464 17 O -0.636 6.636 18 C -0.571 4.571 19 H 0.089 0.911 20 C 0.026 3.974 21 N -0.824 5.824 22 Si 1.000 3.000 23 H -0.245 1.245 24 H -0.269 1.269 25 H -0.269 1.269 26 H 0.123 0.877 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.141 0.859 30 H 0.119 0.881 31 H 0.145 0.855 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.023 0.977 39 H 0.033 0.967 40 H 0.396 0.604 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -17.672 -10.701 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.069 3.931 4 C -0.232 4.232 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.036 4.036 8 C -0.182 4.182 9 C -0.116 4.116 10 C -0.148 4.148 11 C -0.151 4.151 12 C -0.057 4.057 13 H 0.110 0.890 14 C 0.021 3.979 15 N -0.405 5.405 16 C 0.340 3.660 17 O -0.523 6.523 18 C -0.608 4.608 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.453 5.453 22 Si 0.819 3.181 23 H -0.168 1.168 24 H -0.194 1.194 25 H -0.194 1.194 26 H 0.141 0.859 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.230 0.770 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.669 -18.049 -9.984 20.950 hybrid contribution -0.475 1.021 0.181 1.141 sum 3.194 -17.027 -9.803 19.906 Atomic orbital electron populations 1.23312 0.76729 1.05554 1.01954 1.86020 1.23195 1.26530 1.88836 1.19068 0.92791 0.84349 0.96846 1.21318 1.00872 0.91952 1.09041 1.21210 0.94653 0.97674 0.97601 1.19465 0.93168 0.94419 1.04518 1.19656 0.96944 0.90732 0.96288 1.20595 0.91440 0.98561 1.07620 1.20578 0.88769 0.99070 1.03202 1.21533 1.00492 0.92906 0.99853 1.21583 0.93342 1.00338 0.99790 1.20067 0.95508 0.91048 0.99126 0.88999 1.21019 0.96204 0.83010 0.97631 1.45775 1.45208 1.09206 1.40356 1.18656 0.81625 0.86041 0.79633 1.90551 1.36707 1.83270 1.41810 1.21464 1.24701 0.93675 1.20959 0.89249 1.27015 0.93510 1.05570 0.92756 1.70209 1.23726 1.35753 1.15639 0.84943 0.78866 0.74883 0.79397 1.16787 1.19439 1.19418 0.85914 0.92451 0.91921 0.84098 0.86350 0.83722 0.89852 0.88335 0.89320 0.90889 0.90986 0.93034 0.95845 0.94874 0.76984 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.82 113.37 1.11 1.39 16 2 O -0.33 -7.45 10.50 -92.46 -0.97 -8.42 16 3 C 0.11 2.88 6.68 22.44 0.15 3.03 16 4 C -0.21 -5.53 9.04 22.30 0.20 -5.33 16 5 C -0.09 -2.75 9.03 22.35 0.20 -2.54 16 6 C -0.11 -3.28 5.43 -19.83 -0.11 -3.39 16 7 C -0.04 -0.88 5.74 -19.87 -0.11 -0.99 16 8 C -0.16 -3.89 9.55 22.46 0.21 -3.68 16 9 C -0.08 -1.46 5.67 29.74 0.17 -1.29 16 10 C -0.11 -2.05 5.98 30.61 0.18 -1.86 16 11 C -0.11 -2.91 4.98 30.61 0.15 -2.76 16 12 C -0.04 -1.15 2.29 -11.65 -0.03 -1.18 16 13 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 14 C 0.15 5.94 4.68 86.38 0.40 6.35 16 15 N -0.75 -34.30 5.26 -467.41 -2.46 -36.76 16 16 C 0.54 31.78 7.75 86.36 0.67 32.44 16 17 O -0.64 -43.89 15.01 -4.31 -0.06 -43.96 16 18 C -0.57 -32.67 9.54 24.83 0.24 -32.43 16 19 H 0.09 4.55 7.85 -2.91 -0.02 4.52 16 20 C 0.03 1.48 5.50 85.30 0.47 1.95 16 21 N -0.82 -51.25 11.83 21.83 0.26 -50.99 16 22 Si 1.00 41.18 29.56 68.60 2.03 43.21 16 23 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 24 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 25 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 26 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 0.83 7.67 -2.39 -0.02 0.81 16 28 H 0.06 0.82 7.67 -2.39 -0.02 0.80 16 29 H 0.14 3.04 6.33 -2.91 -0.02 3.03 16 30 H 0.12 3.66 6.26 -2.91 -0.02 3.64 16 31 H 0.15 2.81 8.05 -2.91 -0.02 2.79 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.36 8.13 -2.39 -0.02 1.34 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.07 1.84 7.39 -2.39 -0.02 1.83 16 37 H 0.05 1.49 8.08 -2.39 -0.02 1.47 16 38 H 0.02 1.08 8.13 -2.39 -0.02 1.06 16 39 H 0.03 1.43 6.22 -2.39 -0.01 1.41 16 40 H 0.40 15.31 7.72 -92.71 -0.72 14.60 16 41 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 Total: -1.00 -79.22 333.61 3.04 -76.18 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.33 Total: 31.02 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 3.92 Total: -10.29 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -2.20 Total: -87.75 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -1.04 Total: -52.37 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -79.22 3.04 -76.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125516323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.472 kcal (2) G-P(sol) polarization free energy of solvation -79.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds