Wall clock time and date at job start Tue Mar 31 2020 05:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47045 * 2 1 4 4 C 1.36911 * 120.00075 * 81.61008 * 3 2 1 5 5 H 1.08002 * 119.99951 * 167.43186 * 4 3 2 6 6 C 1.39019 * 119.99545 * 347.15803 * 4 3 2 7 7 N 1.31376 * 120.00358 * 15.66446 * 6 4 3 8 8 Si 1.86806 * 119.99740 * 195.65831 * 6 4 3 9 9 H 1.48498 * 109.46999 * 59.99975 * 8 6 4 10 10 H 1.48493 * 109.47042 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46764 * 300.00267 * 8 6 4 12 12 C 1.34779 * 119.99946 * 261.60673 * 3 2 1 13 13 O 1.21625 * 119.99660 * 174.76985 * 12 3 2 14 14 C 1.47425 * 120.00269 * 354.77158 * 12 3 2 15 15 C 1.39766 * 120.19467 * 53.77494 * 14 12 3 16 16 C 1.37778 * 119.90123 * 179.76723 * 15 14 12 17 17 C 1.38563 * 120.30431 * 0.51621 * 16 15 14 18 18 C 1.38071 * 120.39964 * 359.73589 * 17 16 15 19 19 C 1.38684 * 120.09093 * 0.02562 * 18 17 16 20 20 O 1.35667 * 120.15418 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99600 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.46793 * 180.02562 * 21 20 19 23 23 C 1.53003 * 117.49484 * 243.61809 * 22 21 20 24 24 C 1.53001 * 60.00293 * 252.50996 * 23 22 21 25 25 H 1.08997 * 109.47200 * 46.57072 * 1 2 3 26 26 H 1.08991 * 109.47205 * 166.57145 * 1 2 3 27 27 H 1.09008 * 109.46734 * 286.57323 * 1 2 3 28 28 H 1.09005 * 109.47261 * 240.00660 * 2 1 3 29 29 H 1.08995 * 109.47439 * 120.00296 * 2 1 3 30 30 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 31 31 H 1.08004 * 120.05071 * 0.02562 * 15 14 12 32 32 H 1.07995 * 119.84756 * 180.27431 * 16 15 14 33 33 H 1.07993 * 119.79942 * 179.76544 * 17 16 15 34 34 H 1.07997 * 119.95727 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.46772 * 299.99739 * 21 20 19 36 36 H 1.08992 * 109.47353 * 59.99833 * 21 20 19 37 37 H 1.08996 * 115.55289 * 29.32791 * 22 21 20 38 38 H 1.09003 * 117.50092 * 0.02562 * 23 22 21 39 39 H 1.09007 * 117.49845 * 145.02027 * 23 22 21 40 40 H 1.08999 * 117.49844 * 252.51503 * 24 23 22 41 41 H 1.09000 * 117.49683 * 107.48534 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0834 2.0843 1.1730 5 1 2.6252 3.0177 1.2137 6 6 1.4472 1.5995 2.3100 7 7 1.0521 0.3476 2.3584 8 14 1.1544 2.7284 3.7694 9 1 0.3100 3.8746 3.3469 10 1 0.4643 1.9752 4.8471 11 1 2.4568 3.2326 4.2742 12 6 2.4036 1.9598 -1.1547 13 8 2.7184 3.1345 -1.1708 14 6 2.4433 1.1688 -2.3982 15 6 1.3130 0.4620 -2.8181 16 6 1.3553 -0.2713 -3.9837 17 6 2.5172 -0.3204 -4.7371 18 6 3.6427 0.3688 -4.3312 19 6 3.6169 1.1161 -3.1633 20 8 4.7222 1.7934 -2.7631 21 6 5.8806 1.6934 -3.5940 22 6 7.0174 2.5168 -2.9852 23 6 7.5347 3.7105 -3.7905 24 6 8.3853 2.4448 -3.6668 25 1 -0.3633 0.7065 -0.7463 26 1 -0.3633 -0.9995 -0.2386 27 1 -0.3633 0.2932 0.9851 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.6078 0.0095 3.1517 31 1 0.4064 0.4941 -2.2319 32 1 0.4801 -0.8136 -4.3097 33 1 2.5425 -0.9009 -5.6474 34 1 4.5446 0.3252 -4.9237 35 1 6.1867 0.6497 -3.6663 36 1 5.6482 2.0737 -4.5886 37 1 7.0004 2.6111 -1.8995 38 1 7.0648 3.9094 -4.7538 39 1 7.8580 4.5906 -3.2345 40 1 9.2683 2.4921 -3.0295 41 1 8.4753 1.8107 -4.5489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127975665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:27 Heat of formation + Delta-G solvation = 6.540650 kcal Electronic energy + Delta-G solvation = -23349.850852 eV Core-core repulsion = 20004.289994 eV Total energy + Delta-G solvation = -3345.560858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.07087 -38.43695 -37.35205 -36.35417 -35.00550 -31.91158 -30.55194 -29.84312 -29.26552 -27.33953 -25.17384 -22.94666 -22.49583 -22.11618 -21.77397 -20.59127 -19.33438 -17.74626 -16.88470 -16.35895 -16.11769 -15.61178 -15.00487 -14.84563 -14.46913 -14.21942 -13.96876 -13.81700 -13.36376 -12.92591 -12.53205 -12.46562 -12.36599 -11.72828 -11.65539 -11.45563 -11.33775 -11.15743 -11.10600 -10.91165 -10.75333 -10.69522 -10.49377 -10.30607 -10.07296 -9.97981 -9.87379 -8.76763 -8.55525 -8.29727 -7.78516 -7.62020 -6.18218 -3.75537 1.52749 1.77761 3.21309 3.27104 3.29563 3.33119 3.78902 3.83307 4.12560 4.29105 4.66724 4.78546 4.88706 4.93501 5.07711 5.13557 5.19978 5.31287 5.35068 5.46393 5.49553 5.53561 5.70978 5.78002 5.80171 5.95431 5.99280 6.19938 6.25693 6.33386 6.54432 6.64231 6.69847 6.79795 6.83885 6.86699 7.11664 7.44002 7.66225 7.77606 7.79712 8.17805 8.61213 9.24023 9.50803 10.08152 10.68778 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.005465 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.344541 B = 5122.022082 C = 6618.206427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.110 3.890 3 N -0.435 5.435 4 C -0.291 4.291 5 H 0.102 0.898 6 C 0.026 3.974 7 N -0.872 5.872 8 Si 0.926 3.074 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.487 3.513 13 O -0.580 6.580 14 C -0.121 4.121 15 C -0.063 4.063 16 C -0.167 4.167 17 C -0.081 4.081 18 C -0.221 4.221 19 C 0.161 3.839 20 O -0.288 6.288 21 C 0.090 3.910 22 C -0.152 4.152 23 C -0.175 4.175 24 C -0.172 4.172 25 H 0.025 0.975 26 H 0.033 0.967 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.121 0.879 30 H 0.266 0.734 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 -3.802 -11.825 13.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.153 5.153 4 C -0.418 4.418 5 H 0.120 0.880 6 C -0.175 4.175 7 N -0.514 5.514 8 Si 0.753 3.247 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.275 3.725 13 O -0.465 6.465 14 C -0.125 4.125 15 C -0.082 4.082 16 C -0.185 4.185 17 C -0.100 4.100 18 C -0.240 4.240 19 C 0.114 3.886 20 O -0.200 6.200 21 C 0.015 3.985 22 C -0.170 4.170 23 C -0.212 4.212 24 C -0.209 4.209 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.110 0.890 28 H 0.051 0.949 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.218 -3.221 -11.454 13.425 hybrid contribution -0.195 0.177 0.419 0.495 sum 6.023 -3.044 -11.036 12.936 Atomic orbital electron populations 1.22473 0.97175 0.98047 1.03296 1.21857 0.94317 0.83581 1.01608 1.43724 1.54289 1.11847 1.05437 1.19685 1.30503 1.05481 0.86172 0.88045 1.25245 0.96679 0.96310 0.99292 1.69997 1.39824 1.12570 1.28974 0.85989 0.78857 0.79973 0.79851 1.19976 1.20973 1.19954 1.17588 0.85108 0.87077 0.82723 1.90617 1.54418 1.15941 1.85529 1.19629 0.92330 1.02173 0.98392 1.21602 0.97727 0.93356 0.95472 1.20919 0.98416 1.02821 0.96355 1.20881 0.92482 0.97692 0.98906 1.21064 1.00453 1.04253 0.98206 1.18965 0.86370 0.90949 0.92287 1.86237 1.18585 1.66455 1.48721 1.22258 0.83912 0.99201 0.93164 1.22096 0.93262 1.01200 1.00477 1.23067 1.03594 0.92646 1.01857 1.22973 0.93898 1.01265 1.02806 0.95636 0.94759 0.88971 0.94872 0.86196 0.92325 0.84238 0.86020 0.86227 0.85813 0.91916 0.92198 0.86295 0.88670 0.88428 0.88312 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.77 37.16 0.33 -2.94 16 2 C 0.11 2.57 4.91 -4.04 -0.02 2.55 16 3 N -0.44 -11.63 2.64 -116.03 -0.31 -11.94 16 4 C -0.29 -8.23 9.41 -14.99 -0.14 -8.37 16 5 H 0.10 3.03 7.31 -52.49 -0.38 2.65 16 6 C 0.03 0.67 5.13 -17.46 -0.09 0.58 16 7 N -0.87 -22.14 7.40 55.50 0.41 -21.73 16 8 Si 0.93 20.84 29.58 -169.99 -5.03 15.81 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.49 12.99 6.78 -12.52 -0.08 12.90 16 13 O -0.58 -17.48 16.39 1.98 0.03 -17.45 16 14 C -0.12 -2.67 4.78 -104.85 -0.50 -3.17 16 15 C -0.06 -1.17 7.61 -39.18 -0.30 -1.47 16 16 C -0.17 -2.51 10.02 -39.63 -0.40 -2.90 16 17 C -0.08 -1.13 10.03 -39.52 -0.40 -1.53 16 18 C -0.22 -3.41 9.03 -39.48 -0.36 -3.77 16 19 C 0.16 3.19 6.69 -38.68 -0.26 2.93 16 20 O -0.29 -5.80 9.33 -21.98 -0.21 -6.01 16 21 C 0.09 1.29 5.02 37.16 0.19 1.48 16 22 C -0.15 -2.03 6.06 -90.61 -0.55 -2.57 16 23 C -0.17 -1.95 10.18 -26.73 -0.27 -2.22 16 24 C -0.17 -1.70 10.25 -26.73 -0.27 -1.97 16 25 H 0.02 0.53 6.26 -51.93 -0.32 0.20 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.19 5.63 -51.92 -0.29 1.90 16 28 H 0.03 0.72 5.43 -51.93 -0.28 0.44 16 29 H 0.12 3.04 5.87 -51.93 -0.30 2.74 16 30 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 31 H 0.14 2.60 4.64 -52.48 -0.24 2.35 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.12 1.54 6.30 -52.49 -0.33 1.21 16 35 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 36 H 0.06 0.76 7.40 -51.93 -0.38 0.38 16 37 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.09 0.99 8.03 -51.93 -0.42 0.57 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -31.77 331.01 -8.69 -40.45 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.46 Total: 6.33 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -3.13 Total: -10.46 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.10 Total: -33.66 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.17 Total: -23.46 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.77 -8.69 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127975665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.996 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds