Wall clock time and date at job start Tue Mar 31 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47045 * 2 1 4 4 C 1.36911 * 120.00075 * 81.61008 * 3 2 1 5 5 H 1.08002 * 119.99951 * 167.43186 * 4 3 2 6 6 C 1.39019 * 119.99545 * 347.15803 * 4 3 2 7 7 N 1.31376 * 120.00358 * 15.66446 * 6 4 3 8 8 Si 1.86806 * 119.99740 * 195.65831 * 6 4 3 9 9 H 1.48498 * 109.46999 * 59.99975 * 8 6 4 10 10 H 1.48493 * 109.47042 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46764 * 300.00267 * 8 6 4 12 12 C 1.34779 * 119.99946 * 261.60673 * 3 2 1 13 13 O 1.21625 * 119.99660 * 174.76985 * 12 3 2 14 14 C 1.47425 * 120.00269 * 354.77158 * 12 3 2 15 15 C 1.39766 * 120.19467 * 53.77494 * 14 12 3 16 16 C 1.37778 * 119.90123 * 179.76723 * 15 14 12 17 17 C 1.38563 * 120.30431 * 0.51621 * 16 15 14 18 18 C 1.38071 * 120.39964 * 359.73589 * 17 16 15 19 19 C 1.38684 * 120.09093 * 0.02562 * 18 17 16 20 20 O 1.35667 * 120.15418 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99600 * 0.02562 * 20 19 18 22 22 C 1.52998 * 109.46793 * 180.02562 * 21 20 19 23 23 C 1.53003 * 117.49484 * 243.61809 * 22 21 20 24 24 C 1.53001 * 60.00293 * 252.50996 * 23 22 21 25 25 H 1.08997 * 109.47200 * 46.57072 * 1 2 3 26 26 H 1.08991 * 109.47205 * 166.57145 * 1 2 3 27 27 H 1.09008 * 109.46734 * 286.57323 * 1 2 3 28 28 H 1.09005 * 109.47261 * 240.00660 * 2 1 3 29 29 H 1.08995 * 109.47439 * 120.00296 * 2 1 3 30 30 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 31 31 H 1.08004 * 120.05071 * 0.02562 * 15 14 12 32 32 H 1.07995 * 119.84756 * 180.27431 * 16 15 14 33 33 H 1.07993 * 119.79942 * 179.76544 * 17 16 15 34 34 H 1.07997 * 119.95727 * 179.97438 * 18 17 16 35 35 H 1.09007 * 109.46772 * 299.99739 * 21 20 19 36 36 H 1.08992 * 109.47353 * 59.99833 * 21 20 19 37 37 H 1.08996 * 115.55289 * 29.32791 * 22 21 20 38 38 H 1.09003 * 117.50092 * 0.02562 * 23 22 21 39 39 H 1.09007 * 117.49845 * 145.02027 * 23 22 21 40 40 H 1.08999 * 117.49844 * 252.51503 * 24 23 22 41 41 H 1.09000 * 117.49683 * 107.48534 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0834 2.0843 1.1730 5 1 2.6252 3.0177 1.2137 6 6 1.4472 1.5995 2.3100 7 7 1.0521 0.3476 2.3584 8 14 1.1544 2.7284 3.7694 9 1 0.3100 3.8746 3.3469 10 1 0.4643 1.9752 4.8471 11 1 2.4568 3.2326 4.2742 12 6 2.4036 1.9598 -1.1547 13 8 2.7184 3.1345 -1.1708 14 6 2.4433 1.1688 -2.3982 15 6 1.3130 0.4620 -2.8181 16 6 1.3553 -0.2713 -3.9837 17 6 2.5172 -0.3204 -4.7371 18 6 3.6427 0.3688 -4.3312 19 6 3.6169 1.1161 -3.1633 20 8 4.7222 1.7934 -2.7631 21 6 5.8806 1.6934 -3.5940 22 6 7.0174 2.5168 -2.9852 23 6 7.5347 3.7105 -3.7905 24 6 8.3853 2.4448 -3.6668 25 1 -0.3633 0.7065 -0.7463 26 1 -0.3633 -0.9995 -0.2386 27 1 -0.3633 0.2932 0.9851 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.6078 0.0095 3.1517 31 1 0.4064 0.4941 -2.2319 32 1 0.4801 -0.8136 -4.3097 33 1 2.5425 -0.9009 -5.6474 34 1 4.5446 0.3252 -4.9237 35 1 6.1867 0.6497 -3.6663 36 1 5.6482 2.0737 -4.5886 37 1 7.0004 2.6111 -1.8995 38 1 7.0648 3.9094 -4.7538 39 1 7.8580 4.5906 -3.2345 40 1 9.2683 2.4921 -3.0295 41 1 8.4753 1.8107 -4.5489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127975665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:26 Heat of formation + Delta-G solvation = -11.925471 kcal Electronic energy + Delta-G solvation = -23350.651603 eV Core-core repulsion = 20004.289994 eV Total energy + Delta-G solvation = -3346.361609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51375 -40.08423 -38.62011 -37.53639 -37.03633 -33.85086 -32.10194 -31.34137 -30.87312 -28.48145 -27.10643 -24.50102 -23.79760 -23.36103 -23.15356 -21.74754 -20.94930 -19.11182 -18.85868 -18.11529 -17.35095 -16.88903 -16.72565 -16.06738 -16.01597 -15.74110 -15.52079 -15.26552 -14.88859 -14.52810 -14.22168 -13.87266 -13.77030 -13.41940 -13.26344 -12.83175 -12.75787 -12.62146 -12.49336 -12.36494 -12.27011 -12.13608 -12.08668 -11.84123 -11.70841 -11.43963 -10.92757 -10.75702 -10.42387 -9.81805 -9.65767 -9.13007 -8.20818 -5.88347 0.18789 0.49018 1.36482 1.40378 1.50257 2.05157 2.15777 2.26827 2.78771 2.85393 3.12299 3.13510 3.67685 3.84043 3.88990 3.94366 4.04677 4.12524 4.16547 4.30292 4.47299 4.49177 4.51898 4.55069 4.66936 4.71822 4.87381 4.94580 4.94917 4.99241 5.13799 5.14620 5.19661 5.31360 5.40077 5.43624 5.55634 5.63528 5.88347 5.93775 6.10096 6.52246 6.59368 7.17494 7.49073 8.06904 8.63525 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.005465 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.344541 B = 5122.022082 C = 6618.206427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.115 3.885 3 N -0.445 5.445 4 C -0.343 4.343 5 H 0.066 0.934 6 C 0.005 3.995 7 N -0.868 5.868 8 Si 0.986 3.014 9 H -0.280 1.280 10 H -0.261 1.261 11 H -0.276 1.276 12 C 0.474 3.526 13 O -0.638 6.638 14 C -0.168 4.168 15 C -0.072 4.072 16 C -0.157 4.157 17 C -0.060 4.060 18 C -0.212 4.212 19 C 0.140 3.860 20 O -0.333 6.333 21 C 0.087 3.913 22 C -0.189 4.189 23 C -0.178 4.178 24 C -0.138 4.138 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.100 0.900 30 H 0.275 0.725 31 H 0.132 0.868 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.159 0.841 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.980 -6.379 -14.377 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.007 4.007 3 N -0.162 5.162 4 C -0.471 4.471 5 H 0.084 0.916 6 C -0.197 4.197 7 N -0.507 5.507 8 Si 0.809 3.191 9 H -0.206 1.206 10 H -0.185 1.185 11 H -0.201 1.201 12 C 0.264 3.736 13 O -0.527 6.527 14 C -0.172 4.172 15 C -0.091 4.091 16 C -0.175 4.175 17 C -0.077 4.077 18 C -0.231 4.231 19 C 0.093 3.907 20 O -0.247 6.247 21 C 0.012 3.988 22 C -0.208 4.208 23 C -0.215 4.215 24 C -0.175 4.175 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.179 0.821 33 H 0.190 0.810 34 H 0.176 0.824 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.073 -5.862 -14.005 16.352 hybrid contribution -0.122 0.916 1.154 1.479 sum 5.951 -4.946 -12.851 15.000 Atomic orbital electron populations 1.22288 0.95538 1.00028 1.01906 1.21843 0.95541 0.81934 1.01369 1.43941 1.54293 1.12813 1.05152 1.19527 1.33602 1.05766 0.88216 0.91632 1.25884 0.95343 0.97638 1.00820 1.70082 1.38103 1.12737 1.29746 0.85135 0.78533 0.78193 0.77217 1.20610 1.18462 1.20102 1.18462 0.83826 0.86999 0.84311 1.90531 1.56754 1.18603 1.86824 1.19462 0.95285 1.04942 0.97542 1.21609 0.96258 0.94029 0.97209 1.21353 1.00399 1.01297 0.94443 1.21511 0.90822 0.95792 0.99611 1.21472 1.02577 1.02586 0.96432 1.19272 0.85743 0.92051 0.93618 1.86195 1.20189 1.67221 1.51081 1.22556 0.82316 1.00635 0.93245 1.22086 0.95762 1.03903 0.99038 1.23180 1.03830 0.92748 1.01723 1.23103 0.91979 0.99730 1.02692 0.95641 0.91251 0.91285 0.93063 0.88267 0.91451 0.85083 0.82076 0.81028 0.82350 0.89959 0.90338 0.89752 0.87589 0.88624 0.87201 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 8.77 71.98 0.63 -5.38 16 2 C 0.12 5.57 4.91 86.38 0.42 5.99 16 3 N -0.45 -25.35 2.64 -639.25 -1.69 -27.04 16 4 C -0.34 -20.85 9.41 84.09 0.79 -20.06 16 5 H 0.07 4.33 7.31 -2.91 -0.02 4.31 16 6 C 0.01 0.28 5.13 84.95 0.44 0.71 16 7 N -0.87 -44.55 7.40 21.68 0.16 -44.39 16 8 Si 0.99 43.81 29.58 68.60 2.03 45.84 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 10 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.47 27.21 6.78 86.66 0.59 27.80 16 13 O -0.64 -42.11 16.39 -0.98 -0.02 -42.13 16 14 C -0.17 -7.68 4.78 -20.01 -0.10 -7.77 16 15 C -0.07 -2.65 7.61 22.53 0.17 -2.47 16 16 C -0.16 -4.08 10.02 22.24 0.22 -3.86 16 17 C -0.06 -1.34 10.03 22.31 0.22 -1.11 16 18 C -0.21 -5.86 9.03 22.34 0.20 -5.65 16 19 C 0.14 5.58 6.69 22.85 0.15 5.73 16 20 O -0.33 -14.13 9.33 -86.70 -0.81 -14.94 16 21 C 0.09 2.47 5.02 71.98 0.36 2.83 16 22 C -0.19 -5.20 6.06 -10.79 -0.07 -5.27 16 23 C -0.18 -3.90 10.18 30.60 0.31 -3.59 16 24 C -0.14 -2.47 10.25 30.60 0.31 -2.16 16 25 H 0.02 1.07 6.26 -2.39 -0.01 1.06 16 26 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.07 3.29 5.63 -2.38 -0.01 3.28 16 28 H 0.05 2.26 5.43 -2.38 -0.01 2.25 16 29 H 0.10 5.18 5.87 -2.39 -0.01 5.16 16 30 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 31 H 0.13 4.87 4.64 -2.91 -0.01 4.85 16 32 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.16 3.18 6.30 -2.91 -0.02 3.17 16 35 H 0.08 1.92 7.66 -2.38 -0.02 1.90 16 36 H 0.08 1.87 7.40 -2.39 -0.02 1.85 16 37 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.11 2.07 8.03 -2.39 -0.02 2.05 16 39 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -77.94 331.01 5.39 -72.55 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 1.04 Total: 24.37 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.67 Total: -14.26 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.53 Total: -71.43 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -0.83 Total: -57.07 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -77.94 5.39 -72.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127975665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.626 kcal (2) G-P(sol) polarization free energy of solvation -77.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds