Wall clock time and date at job start Tue Mar 31 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46831 * 2 1 4 4 C 1.46498 * 120.00421 * 275.21271 * 3 2 1 5 5 C 1.50698 * 109.47453 * 270.00346 * 4 3 2 6 6 H 1.08001 * 119.99457 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00204 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00015 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47021 * 119.99618 * 9 7 5 12 12 H 1.48494 * 109.47162 * 240.00199 * 9 7 5 13 13 C 1.34783 * 120.00029 * 95.21696 * 3 2 1 14 14 O 1.21279 * 120.00072 * 184.31806 * 13 3 2 15 15 C 1.50700 * 119.99694 * 4.31726 * 13 3 2 16 16 H 1.08996 * 109.33767 * 200.63147 * 15 13 3 17 17 O 1.42721 * 109.34029 * 320.30744 * 15 13 3 18 18 C 1.43214 * 113.12740 * 171.80073 * 17 15 13 19 19 C 1.52977 * 108.46744 * 289.27838 * 18 17 15 20 20 C 1.50742 * 109.75302 * 49.21544 * 19 18 17 21 21 C 1.38601 * 118.76174 * 163.15623 * 20 19 18 22 22 C 1.38064 * 120.27800 * 179.84212 * 21 20 19 23 23 C 1.38260 * 119.86312 * 359.96708 * 22 21 20 24 24 C 1.38060 * 119.89362 * 0.07778 * 23 22 21 25 25 C 1.37913 * 121.35384 * 343.09585 * 20 19 18 26 26 H 1.08993 * 109.47505 * 56.49498 * 1 2 3 27 27 H 1.09002 * 109.46843 * 176.50015 * 1 2 3 28 28 H 1.09004 * 109.46604 * 296.49478 * 1 2 3 29 29 H 1.08999 * 109.46639 * 240.00422 * 2 1 3 30 30 H 1.08995 * 109.47237 * 120.00471 * 2 1 3 31 31 H 1.09001 * 109.47044 * 30.00452 * 4 3 2 32 32 H 1.09001 * 109.47245 * 150.00261 * 4 3 2 33 33 H 0.96998 * 119.99685 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.63539 * 169.59303 * 18 17 15 35 35 H 1.08995 * 109.64231 * 48.97585 * 18 17 15 36 36 H 1.09002 * 109.42013 * 169.29624 * 19 18 17 37 37 H 1.08991 * 109.42742 * 289.12673 * 19 18 17 38 38 H 1.08001 * 119.85833 * 359.81866 * 21 20 19 39 39 H 1.08003 * 120.06880 * 179.97438 * 22 21 20 40 40 H 1.07995 * 120.05332 * 180.02562 * 23 22 21 41 41 H 1.08006 * 119.84428 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1538 2.1103 -1.2634 5 6 3.5342 1.8887 -1.8258 6 1 4.2402 1.2673 -1.2949 7 6 3.8960 2.4793 -3.0181 8 7 3.0361 3.2357 -3.6647 9 14 5.6073 2.2052 -3.7148 10 1 6.3770 1.3209 -2.8033 11 1 5.5012 1.5659 -5.0510 12 1 6.3039 3.5102 -3.8442 13 6 2.3430 1.9812 1.1624 14 8 2.6722 3.1484 1.1711 15 6 2.2969 1.2016 2.4513 16 1 2.2246 1.8944 3.2897 17 8 1.1547 0.3459 2.4455 18 6 1.1310 -0.5680 3.5479 19 6 2.2277 -1.6130 3.3348 20 6 3.5272 -0.9265 2.9996 21 6 4.7085 -1.6423 3.1144 22 6 5.9163 -1.0455 2.8123 23 6 5.9475 0.2716 2.3928 24 6 4.7713 0.9855 2.2790 25 6 3.5580 0.3880 2.5837 26 1 -0.3634 0.5672 -0.8568 27 1 -0.3633 -1.0258 -0.0627 28 1 -0.3633 0.4585 0.9198 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.4099 1.7485 -1.9732 32 1 2.0000 3.1749 -1.0869 33 1 3.2907 3.6515 -4.5032 34 1 0.1598 -1.0607 3.5943 35 1 1.3155 -0.0273 4.4761 36 1 2.3517 -2.1991 4.2454 37 1 1.9448 -2.2735 2.5153 38 1 4.6842 -2.6712 3.4420 39 1 6.8348 -1.6062 2.9034 40 1 6.8904 0.7414 2.1552 41 1 4.7966 2.0144 1.9516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132741075.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:26 Heat of formation + Delta-G solvation = -70.440692 kcal Electronic energy + Delta-G solvation = -24262.934374 eV Core-core repulsion = 20914.035355 eV Total energy + Delta-G solvation = -3348.899020 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.00166 -40.02543 -38.55122 -36.99295 -34.89957 -33.99320 -32.82729 -31.56636 -30.59411 -29.16314 -27.17757 -25.08871 -24.65829 -24.22136 -23.17622 -21.14156 -20.33110 -18.68621 -18.31980 -18.19161 -17.54281 -16.74064 -16.55108 -16.35334 -16.00076 -15.76255 -15.24921 -14.92105 -14.79357 -14.45282 -14.37422 -14.19245 -13.67731 -13.49213 -13.46403 -13.21417 -13.07843 -12.87403 -12.71898 -12.64487 -12.50291 -12.18712 -12.06372 -11.90370 -11.71873 -11.46882 -10.83442 -10.68096 -10.57239 -9.73331 -9.57168 -9.47007 -8.25369 -6.40321 0.28027 0.40077 1.32248 1.34632 1.46592 1.56588 2.21862 2.38913 2.67062 2.84441 3.03703 3.47600 3.61389 3.80912 3.91095 4.09343 4.13979 4.25606 4.27709 4.39454 4.54131 4.57144 4.63279 4.70540 4.73916 4.90630 4.94500 4.98703 5.04125 5.07208 5.08388 5.19520 5.20993 5.46006 5.53245 5.55480 5.56857 5.58138 5.82081 5.97278 6.03041 6.05093 6.65103 6.73423 7.20062 7.36111 8.82379 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.006615 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.079625 B = 4231.525568 C = 5208.793437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.105 3.895 3 N -0.582 5.582 4 C 0.259 3.741 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.267 1.267 12 H -0.279 1.279 13 C 0.515 3.485 14 O -0.596 6.596 15 C 0.133 3.867 16 H 0.097 0.903 17 O -0.363 6.363 18 C 0.044 3.956 19 C -0.111 4.111 20 C -0.070 4.070 21 C -0.117 4.117 22 C -0.110 4.110 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.127 4.127 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.022 0.978 32 H -0.002 1.002 33 H 0.268 0.732 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -16.304 16.975 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 N -0.311 5.311 4 C 0.138 3.862 5 C -0.578 4.578 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.204 1.204 13 C 0.302 3.698 14 O -0.478 6.478 15 C 0.072 3.928 16 H 0.114 0.886 17 O -0.282 6.282 18 C -0.032 4.032 19 C -0.147 4.147 20 C -0.070 4.070 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.128 4.128 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.040 0.960 32 H 0.016 0.984 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.117 0.883 38 H 0.180 0.820 39 H 0.171 0.829 40 H 0.146 0.854 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.972 -15.624 16.641 22.847 hybrid contribution 1.111 1.007 -0.840 1.718 sum 0.139 -14.617 15.801 21.526 Atomic orbital electron populations 1.22050 0.94283 1.02821 1.01357 1.21867 0.95805 0.81098 1.02914 1.48163 1.61306 1.15246 1.06354 1.18770 0.96035 0.91030 0.80354 1.21646 0.99164 1.30587 1.06390 0.93216 1.25860 1.01826 0.94381 0.96970 1.70063 1.36962 1.32750 1.16942 0.85376 0.78907 0.78137 0.78478 1.19230 1.19158 1.20444 1.20598 0.76847 0.86493 0.85822 1.90650 1.51280 1.18479 1.87395 1.20795 0.85976 0.91497 0.94543 0.88555 1.88304 1.40618 1.50474 1.48842 1.23073 1.01276 0.90090 0.88722 1.21265 0.90216 0.98412 1.04854 1.19842 0.97588 0.91560 0.98051 1.21457 0.90922 1.01055 1.00015 1.21503 0.99709 0.94017 0.97540 1.21277 0.97535 0.96040 1.00445 1.21137 0.93823 0.99826 0.99730 1.19771 0.93462 0.95914 1.03661 0.95300 0.89144 0.91294 0.92939 0.87302 0.96023 0.98429 0.92313 0.84683 0.91684 0.86135 0.88336 0.82019 0.82901 0.85416 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.78 71.98 0.70 -3.78 16 2 C 0.10 3.84 5.59 86.38 0.48 4.33 16 3 N -0.58 -27.56 2.46 -826.16 -2.03 -29.59 16 4 C 0.26 15.02 5.22 85.63 0.45 15.47 16 5 C -0.54 -32.71 9.39 25.60 0.24 -32.47 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.51 5.46 84.66 0.46 0.98 16 8 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 9 Si 0.97 46.38 29.54 68.60 2.03 48.40 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 C 0.52 24.06 5.81 87.66 0.51 24.57 16 14 O -0.60 -33.48 16.19 -3.03 -0.05 -33.53 16 15 C 0.13 4.53 2.81 29.09 0.08 4.61 16 16 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 17 O -0.36 -9.70 5.23 -148.98 -0.78 -10.48 16 18 C 0.04 0.69 6.85 71.97 0.49 1.19 16 19 C -0.11 -1.57 5.52 29.85 0.16 -1.41 16 20 C -0.07 -1.60 5.40 -19.84 -0.11 -1.70 16 21 C -0.12 -2.26 9.67 22.32 0.22 -2.04 16 22 C -0.11 -2.41 10.05 22.23 0.22 -2.19 16 23 C -0.13 -3.94 10.05 22.23 0.22 -3.72 16 24 C -0.13 -4.55 9.09 22.32 0.20 -4.35 16 25 C -0.13 -4.00 4.78 -19.86 -0.09 -4.10 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.05 6.46 -2.38 -0.02 2.03 16 29 H 0.05 2.03 8.11 -2.39 -0.02 2.01 16 30 H 0.11 3.45 3.94 -2.39 -0.01 3.45 16 31 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 32 H 0.00 -0.16 7.37 -2.39 -0.02 -0.18 16 33 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 0.95 8.07 -2.39 -0.02 0.93 16 36 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.09 3.89 7.07 -2.91 -0.02 3.87 16 Total: -1.00 -79.41 331.70 4.72 -74.69 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.02 Total: 12.74 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.25 Total: -4.62 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -1.74 Total: -87.19 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.83 Total: -44.01 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -79.41 4.72 -74.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132741075.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.248 kcal (2) G-P(sol) polarization free energy of solvation -79.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds