Wall clock time and date at job start Tue Mar 31 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47284 * 2 1 4 4 C 1.46503 * 120.00092 * 275.03436 * 3 2 1 5 5 C 1.50697 * 109.47550 * 270.00247 * 4 3 2 6 6 H 1.07998 * 119.99965 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99640 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00421 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99669 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46858 * 60.00061 * 9 7 5 11 11 H 1.48496 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47384 * 299.99963 * 9 7 5 13 13 C 1.34781 * 119.99848 * 95.03987 * 3 2 1 14 14 O 1.21280 * 119.99737 * 185.60738 * 13 3 2 15 15 C 1.50698 * 119.99892 * 5.60774 * 13 3 2 16 16 H 1.08994 * 109.20475 * 325.68549 * 15 13 3 17 17 O 1.42730 * 109.33283 * 206.08753 * 15 13 3 18 18 C 1.43202 * 113.14113 * 187.95017 * 17 15 13 19 19 C 1.52966 * 108.49401 * 70.62643 * 18 17 15 20 20 C 1.50745 * 109.76628 * 310.75703 * 19 18 17 21 21 C 1.38593 * 118.77056 * 196.97152 * 20 19 18 22 22 C 1.38073 * 120.27173 * 180.44497 * 21 20 19 23 23 C 1.38261 * 119.86413 * 0.02562 * 22 21 20 24 24 C 1.38051 * 119.89646 * 359.89698 * 23 22 21 25 25 C 1.37913 * 121.34019 * 17.23893 * 20 19 18 26 26 H 1.08995 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46751 * 300.00058 * 1 2 3 28 28 H 1.08999 * 109.46869 * 59.99816 * 1 2 3 29 29 H 1.09002 * 109.47455 * 239.99941 * 2 1 3 30 30 H 1.09004 * 109.47568 * 120.00178 * 2 1 3 31 31 H 1.08997 * 109.46756 * 30.00856 * 4 3 2 32 32 H 1.09003 * 109.46763 * 149.99543 * 4 3 2 33 33 H 0.96995 * 119.99848 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.63771 * 310.92393 * 18 17 15 35 35 H 1.09005 * 109.80045 * 190.42821 * 18 17 15 36 36 H 1.09003 * 109.42783 * 190.66627 * 19 18 17 37 37 H 1.08996 * 109.42157 * 70.84835 * 19 18 17 38 38 H 1.07994 * 119.86420 * 0.46857 * 21 20 19 39 39 H 1.07997 * 120.06250 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.04925 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.84724 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1576 2.1089 -1.2638 5 6 3.5396 1.8866 -1.8220 6 1 4.2440 1.2658 -1.2885 7 6 3.9050 2.4768 -3.0132 8 7 3.0474 3.2333 -3.6627 9 14 5.6185 2.2019 -3.7047 10 1 5.8290 0.7514 -3.9435 11 1 5.7594 2.9395 -4.9858 12 1 6.6289 2.6957 -2.7349 13 6 2.3396 1.9823 1.1627 14 8 2.6463 3.1556 1.1742 15 6 2.3178 1.1965 2.4484 16 1 1.5152 0.4604 2.4052 17 8 2.0862 2.0848 3.5413 18 6 2.2287 1.4542 4.8191 19 6 3.7107 1.1531 5.0490 20 6 4.2836 0.4593 3.8396 21 6 5.4891 -0.2130 3.9649 22 6 6.0465 -0.8515 2.8749 23 6 5.3997 -0.8195 1.6533 24 6 4.1982 -0.1514 1.5281 25 6 3.6359 0.4878 2.6224 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.4157 1.7465 -1.9754 32 1 2.0032 3.1737 -1.0889 33 1 3.3047 3.6488 -4.5005 34 1 1.6595 0.5247 4.8344 35 1 1.8644 2.1196 5.6019 36 1 3.8187 0.5088 5.9216 37 1 4.2478 2.0861 5.2200 38 1 5.9943 -0.2379 4.9190 39 1 6.9862 -1.3740 2.9762 40 1 5.8333 -1.3176 0.7986 41 1 3.6934 -0.1273 0.5736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132741293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:30 Heat of formation + Delta-G solvation = -48.186490 kcal Electronic energy + Delta-G solvation = -23976.101136 eV Core-core repulsion = 20628.167131 eV Total energy + Delta-G solvation = -3347.934005 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67306 -38.55517 -37.40621 -35.32532 -33.15346 -32.68771 -31.65783 -30.11876 -29.46272 -27.54206 -25.73401 -23.86171 -23.34880 -22.73253 -21.87800 -20.10154 -18.51002 -17.40933 -16.64088 -16.46271 -16.34229 -15.47332 -15.25882 -14.89030 -14.47167 -14.40194 -14.00395 -13.64948 -13.44945 -13.26710 -12.99978 -12.75063 -12.46587 -12.14122 -12.06128 -11.93875 -11.69734 -11.51284 -11.19839 -11.00856 -10.90235 -10.77158 -10.62198 -10.49800 -10.14456 -9.66021 -9.58842 -9.13269 -8.62818 -8.43220 -8.38915 -7.69505 -6.04474 -4.09505 1.36471 1.47493 3.21092 3.30996 3.36178 3.37620 3.48028 3.86922 4.27368 4.44635 4.63470 4.70609 4.82481 4.93975 5.08571 5.15695 5.21495 5.27277 5.30378 5.32109 5.40497 5.48368 5.59952 5.73020 5.73655 5.76680 5.84537 5.99559 6.06558 6.15977 6.20330 6.47702 6.51109 6.60967 6.64368 6.96222 7.08013 7.17319 7.45465 7.52796 7.91994 8.22044 8.35205 8.88278 9.05324 9.55540 11.03591 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.006184 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.744787 B = 4526.866995 C = 5366.251516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.521 3.479 14 O -0.515 6.515 15 C 0.112 3.888 16 H 0.087 0.913 17 O -0.348 6.348 18 C 0.057 3.943 19 C -0.115 4.115 20 C -0.070 4.070 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.106 4.106 25 C -0.108 4.108 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -11.465 15.225 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.029 4.029 3 N -0.329 5.329 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.305 3.695 14 O -0.390 6.390 15 C 0.050 3.950 16 H 0.104 0.896 17 O -0.265 6.265 18 C -0.020 4.020 19 C -0.152 4.152 20 C -0.070 4.070 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.124 4.124 25 C -0.108 4.108 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.846 -10.491 15.009 18.332 hybrid contribution 1.162 -0.477 -0.476 1.343 sum 0.315 -10.968 14.534 18.211 Atomic orbital electron populations 1.22212 0.96388 1.01522 1.02674 1.21654 0.94152 0.84391 1.02752 1.48230 1.63536 1.13420 1.07728 1.19308 0.96869 0.93220 0.77740 1.21392 0.98534 1.30825 1.05999 0.92429 1.24909 0.97382 0.94879 0.96735 1.69919 1.34965 1.31858 1.16441 0.86599 0.84647 0.78201 0.78251 1.20210 1.21147 1.20166 1.19617 0.78574 0.87443 0.83832 1.90681 1.46557 1.15830 1.85899 1.20911 0.94366 0.91502 0.88178 0.89600 1.88192 1.90389 1.35078 1.12864 1.22658 0.94772 0.98405 0.86126 1.21133 0.97298 1.01013 0.95745 1.19418 0.95316 0.98019 0.94222 1.20959 0.95354 0.98983 0.98960 1.21114 0.99632 0.99552 0.93079 1.21129 0.95304 0.99696 0.97579 1.21598 0.96140 0.95770 0.98842 1.19802 0.97162 0.99765 0.94104 0.92053 0.92948 0.91687 0.89643 0.91341 0.94674 0.93662 0.92637 0.92701 0.87994 0.89805 0.89516 0.86129 0.86097 0.85715 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.23 37.16 0.38 -1.94 16 2 C 0.09 1.51 4.23 -4.05 -0.02 1.49 16 3 N -0.60 -12.68 1.88 -175.06 -0.33 -13.01 16 4 C 0.25 6.44 5.23 -5.19 -0.03 6.42 16 5 C -0.53 -14.80 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.59 7.77 -52.49 -0.41 1.18 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.52 11.66 6.20 -10.98 -0.07 11.59 16 14 O -0.52 -14.13 16.23 -12.96 -0.21 -14.34 16 15 C 0.11 1.97 2.45 -29.06 -0.07 1.90 16 16 H 0.09 1.28 6.50 -51.93 -0.34 0.94 16 17 O -0.35 -6.12 10.09 -53.75 -0.54 -6.67 16 18 C 0.06 0.69 6.85 37.14 0.25 0.94 16 19 C -0.11 -1.33 6.00 -27.88 -0.17 -1.49 16 20 C -0.07 -1.00 5.78 -104.59 -0.60 -1.61 16 21 C -0.12 -1.58 9.67 -39.51 -0.38 -1.96 16 22 C -0.12 -1.48 10.05 -39.63 -0.40 -1.88 16 23 C -0.12 -1.75 10.05 -39.64 -0.40 -2.15 16 24 C -0.11 -1.78 8.20 -39.50 -0.32 -2.10 16 25 C -0.11 -1.80 5.39 -104.61 -0.56 -2.36 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 30 H 0.07 0.95 4.57 -51.93 -0.24 0.71 16 31 H 0.04 0.91 8.07 -51.93 -0.42 0.50 16 32 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.14 2.56 4.55 -52.48 -0.24 2.32 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -34.47 333.85 -8.95 -43.42 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.80 Total: 1.08 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.81 Total: -6.57 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.41 Total: -38.76 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.75 Total: -21.00 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.47 -8.95 -43.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132741293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.766 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds