Wall clock time and date at job start Tue Mar 31 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47284 * 2 1 4 4 C 1.46503 * 120.00092 * 275.03436 * 3 2 1 5 5 C 1.50697 * 109.47550 * 270.00247 * 4 3 2 6 6 H 1.07998 * 119.99965 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99640 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00421 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99669 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46858 * 60.00061 * 9 7 5 11 11 H 1.48496 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47384 * 299.99963 * 9 7 5 13 13 C 1.34781 * 119.99848 * 95.03987 * 3 2 1 14 14 O 1.21280 * 119.99737 * 185.60738 * 13 3 2 15 15 C 1.50698 * 119.99892 * 5.60774 * 13 3 2 16 16 H 1.08994 * 109.20475 * 325.68549 * 15 13 3 17 17 O 1.42730 * 109.33283 * 206.08753 * 15 13 3 18 18 C 1.43202 * 113.14113 * 187.95017 * 17 15 13 19 19 C 1.52966 * 108.49401 * 70.62643 * 18 17 15 20 20 C 1.50745 * 109.76628 * 310.75703 * 19 18 17 21 21 C 1.38593 * 118.77056 * 196.97152 * 20 19 18 22 22 C 1.38073 * 120.27173 * 180.44497 * 21 20 19 23 23 C 1.38261 * 119.86413 * 0.02562 * 22 21 20 24 24 C 1.38051 * 119.89646 * 359.89698 * 23 22 21 25 25 C 1.37913 * 121.34019 * 17.23893 * 20 19 18 26 26 H 1.08995 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46751 * 300.00058 * 1 2 3 28 28 H 1.08999 * 109.46869 * 59.99816 * 1 2 3 29 29 H 1.09002 * 109.47455 * 239.99941 * 2 1 3 30 30 H 1.09004 * 109.47568 * 120.00178 * 2 1 3 31 31 H 1.08997 * 109.46756 * 30.00856 * 4 3 2 32 32 H 1.09003 * 109.46763 * 149.99543 * 4 3 2 33 33 H 0.96995 * 119.99848 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.63771 * 310.92393 * 18 17 15 35 35 H 1.09005 * 109.80045 * 190.42821 * 18 17 15 36 36 H 1.09003 * 109.42783 * 190.66627 * 19 18 17 37 37 H 1.08996 * 109.42157 * 70.84835 * 19 18 17 38 38 H 1.07994 * 119.86420 * 0.46857 * 21 20 19 39 39 H 1.07997 * 120.06250 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.04925 * 179.97438 * 23 22 21 41 41 H 1.08004 * 119.84724 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1576 2.1089 -1.2638 5 6 3.5396 1.8866 -1.8220 6 1 4.2440 1.2658 -1.2885 7 6 3.9050 2.4768 -3.0132 8 7 3.0474 3.2333 -3.6627 9 14 5.6185 2.2019 -3.7047 10 1 5.8290 0.7514 -3.9435 11 1 5.7594 2.9395 -4.9858 12 1 6.6289 2.6957 -2.7349 13 6 2.3396 1.9823 1.1627 14 8 2.6463 3.1556 1.1742 15 6 2.3178 1.1965 2.4484 16 1 1.5152 0.4604 2.4052 17 8 2.0862 2.0848 3.5413 18 6 2.2287 1.4542 4.8191 19 6 3.7107 1.1531 5.0490 20 6 4.2836 0.4593 3.8396 21 6 5.4891 -0.2130 3.9649 22 6 6.0465 -0.8515 2.8749 23 6 5.3997 -0.8195 1.6533 24 6 4.1982 -0.1514 1.5281 25 6 3.6359 0.4878 2.6224 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.4157 1.7465 -1.9754 32 1 2.0032 3.1737 -1.0889 33 1 3.3047 3.6488 -4.5005 34 1 1.6595 0.5247 4.8344 35 1 1.8644 2.1196 5.6019 36 1 3.8187 0.5088 5.9216 37 1 4.2478 2.0861 5.2200 38 1 5.9943 -0.2379 4.9190 39 1 6.9862 -1.3740 2.9762 40 1 5.8333 -1.3176 0.7986 41 1 3.6934 -0.1273 0.5736 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132741293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:30 Heat of formation + Delta-G solvation = -69.149235 kcal Electronic energy + Delta-G solvation = -23977.010149 eV Core-core repulsion = 20628.167131 eV Total energy + Delta-G solvation = -3348.843018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97111 -40.07047 -38.57171 -37.07161 -35.01805 -33.99784 -32.87292 -31.67019 -30.54950 -29.31327 -27.23013 -25.09029 -24.85331 -24.15956 -23.22201 -21.14566 -20.10560 -18.85323 -18.46676 -17.95141 -17.83268 -16.81200 -16.53658 -16.29864 -16.03972 -15.84567 -15.26236 -14.87705 -14.79116 -14.60788 -14.32061 -14.28452 -13.79544 -13.55069 -13.44926 -13.30197 -13.17430 -12.89302 -12.71276 -12.65277 -12.52073 -12.23137 -12.06640 -11.94503 -11.75062 -11.56228 -10.79010 -10.71531 -10.65145 -9.74263 -9.58839 -9.51711 -8.23672 -6.38118 0.25913 0.39726 1.34206 1.39045 1.45839 1.60101 1.95518 2.37437 2.75529 2.97765 3.06619 3.45348 3.51275 3.74543 3.88105 3.98501 4.04701 4.12231 4.23726 4.28873 4.35662 4.52327 4.55409 4.56348 4.70007 4.81351 4.86337 4.91121 4.93665 5.00650 5.03063 5.14429 5.19938 5.33452 5.46220 5.52582 5.54845 5.57269 5.78380 6.00420 6.03378 6.04780 6.61883 6.70772 7.22380 7.37391 8.83843 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.006184 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.744787 B = 4526.866995 C = 5366.251516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.256 1.256 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.511 3.489 14 O -0.583 6.583 15 C 0.128 3.872 16 H 0.113 0.887 17 O -0.384 6.384 18 C 0.047 3.953 19 C -0.113 4.113 20 C -0.078 4.078 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.134 4.134 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.030 0.970 32 H -0.005 1.005 33 H 0.267 0.733 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.135 0.865 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.485 -14.202 17.501 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.032 4.032 3 N -0.326 5.326 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.788 3.212 10 H -0.180 1.180 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.298 3.702 14 O -0.463 6.463 15 C 0.066 3.934 16 H 0.130 0.870 17 O -0.302 6.302 18 C -0.028 4.028 19 C -0.149 4.149 20 C -0.078 4.078 21 C -0.138 4.138 22 C -0.128 4.128 23 C -0.151 4.151 24 C -0.150 4.150 25 C -0.135 4.135 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.048 0.952 32 H 0.013 0.987 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.099 0.901 38 H 0.175 0.825 39 H 0.172 0.828 40 H 0.153 0.847 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.542 -13.298 17.300 21.827 hybrid contribution 0.718 0.364 -1.113 1.373 sum 1.260 -12.934 16.187 20.758 Atomic orbital electron populations 1.22170 0.94200 1.03848 1.01875 1.21966 0.95835 0.81426 1.03982 1.48189 1.63094 1.15109 1.06163 1.18769 0.96241 0.91011 0.79801 1.21651 0.99208 1.30885 1.06291 0.92536 1.25832 1.01623 0.94422 0.97078 1.70047 1.37083 1.32671 1.16892 0.85525 0.79058 0.79249 0.77372 1.17999 1.20307 1.20630 1.20624 0.76891 0.87059 0.85621 1.90625 1.49643 1.18854 1.87166 1.20668 0.96284 0.90690 0.85708 0.87031 1.88144 1.90706 1.36667 1.14722 1.23071 0.95834 0.99865 0.84043 1.21224 0.96481 1.01272 0.95959 1.19836 0.95827 0.97921 0.94261 1.21410 0.94501 0.97429 1.00470 1.21530 1.00379 0.98749 0.92131 1.21361 0.94813 0.99768 0.99136 1.21565 0.97529 0.97627 0.98247 1.19842 0.97358 1.00865 0.95404 0.88068 0.92623 0.93635 0.89867 0.88666 0.95249 0.98709 0.92389 0.90469 0.85595 0.85728 0.90079 0.82481 0.82797 0.84734 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 10.23 71.98 0.74 -3.59 16 2 C 0.09 2.89 4.23 86.38 0.37 3.26 16 3 N -0.59 -26.59 1.88 -826.16 -1.55 -28.14 16 4 C 0.26 14.62 5.23 85.63 0.45 15.07 16 5 C -0.54 -31.64 9.39 25.60 0.24 -31.40 16 6 H 0.06 3.24 7.77 -2.91 -0.02 3.21 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 9 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.51 24.03 6.20 87.66 0.54 24.57 16 14 O -0.58 -34.30 16.23 14.68 0.24 -34.06 16 15 C 0.13 4.51 2.45 29.09 0.07 4.58 16 16 H 0.11 3.20 6.50 -2.39 -0.02 3.18 16 17 O -0.38 -13.42 10.09 -131.27 -1.33 -14.75 16 18 C 0.05 1.01 6.85 71.97 0.49 1.51 16 19 C -0.11 -2.23 6.00 29.85 0.18 -2.05 16 20 C -0.08 -2.06 5.78 -19.84 -0.11 -2.17 16 21 C -0.12 -2.59 9.67 22.32 0.22 -2.37 16 22 C -0.11 -2.45 10.05 22.24 0.22 -2.23 16 23 C -0.13 -3.70 10.05 22.23 0.22 -3.48 16 24 C -0.13 -4.41 8.20 22.32 0.18 -4.22 16 25 C -0.13 -4.38 5.39 -19.86 -0.11 -4.48 16 26 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 2.71 8.11 -2.39 -0.02 2.69 16 30 H 0.10 2.59 4.57 -2.39 -0.01 2.57 16 31 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 32 H -0.01 -0.34 7.35 -2.39 -0.02 -0.36 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 35 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.12 4.47 4.55 -2.91 -0.01 4.45 16 Total: -1.00 -81.12 333.85 4.86 -76.26 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.03 Total: 15.90 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 4.16 Total: -5.98 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -1.27 Total: -84.81 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -1.09 Total: -48.81 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -81.12 4.86 -76.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132741293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.108 kcal (2) G-P(sol) polarization free energy of solvation -81.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds