Wall clock time and date at job start Tue Mar 31 2020 06:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99753 * 2 1 4 4 C 1.53001 * 109.47006 * 269.99097 * 3 2 1 5 5 C 1.53003 * 109.47120 * 179.97438 * 4 3 2 6 6 C 1.53004 * 117.50135 * 243.74835 * 5 4 3 7 7 C 1.53000 * 117.49759 * 175.08742 * 5 4 3 8 8 C 1.34777 * 119.99826 * 179.97438 * 2 1 3 9 9 O 1.21595 * 119.99798 * 184.64257 * 8 2 1 10 10 C 1.47534 * 120.00506 * 4.63893 * 8 2 1 11 11 C 1.39668 * 120.19457 * 311.86889 * 10 8 2 12 12 C 1.37824 * 119.91545 * 180.02562 * 11 10 8 13 13 C 1.38575 * 120.32777 * 359.97438 * 12 11 10 14 14 C 1.38027 * 120.39916 * 0.02562 * 13 12 11 15 15 C 1.38835 * 120.06982 * 0.02562 * 14 13 12 16 16 O 1.35519 * 120.15900 * 179.97438 * 15 14 13 17 17 C 1.34821 * 116.99942 * 354.04808 * 16 15 14 18 18 H 1.08002 * 120.00078 * 5.04215 * 17 16 15 19 19 C 1.38701 * 119.99759 * 185.04656 * 17 16 15 20 20 N 1.31521 * 119.99316 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00198 * 0.02562 * 19 17 16 22 22 H 1.48488 * 109.47320 * 89.99894 * 21 19 17 23 23 H 1.48502 * 109.46764 * 210.00230 * 21 19 17 24 24 H 1.48507 * 109.46844 * 329.99439 * 21 19 17 25 25 H 1.08999 * 109.47836 * 272.16637 * 1 2 3 26 26 H 1.09000 * 109.47196 * 32.17216 * 1 2 3 27 27 H 1.09008 * 109.46461 * 152.16668 * 1 2 3 28 28 H 1.09001 * 109.47234 * 29.99476 * 3 2 1 29 29 H 1.09003 * 109.47153 * 149.99623 * 3 2 1 30 30 H 1.09001 * 109.47433 * 300.00256 * 4 3 2 31 31 H 1.09003 * 109.46736 * 60.00270 * 4 3 2 32 32 H 1.08994 * 115.54842 * 29.42388 * 5 4 3 33 33 H 1.09001 * 117.49146 * 0.02562 * 6 5 4 34 34 H 1.09000 * 117.49619 * 145.02228 * 6 5 4 35 35 H 1.08999 * 117.50175 * 214.98227 * 7 5 4 36 36 H 1.09003 * 117.49756 * 0.02562 * 7 5 4 37 37 H 1.07996 * 120.04055 * 359.97438 * 11 10 8 38 38 H 1.08007 * 119.83791 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.79702 * 179.74618 * 13 12 11 40 40 H 1.07991 * 119.96154 * 180.02562 * 14 13 12 41 41 H 0.97006 * 119.99566 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2170 3.0357 -1.4426 6 6 2.5157 4.2557 -2.0432 7 6 3.6709 3.5893 -2.7947 8 6 2.1388 -1.1672 0.0005 9 8 3.3518 -1.1689 0.0858 10 6 1.4049 -2.4429 -0.1022 11 6 0.2958 -2.6828 0.7121 12 6 -0.3853 -3.8767 0.6117 13 6 0.0243 -4.8419 -0.2944 14 6 1.1185 -4.6188 -1.1056 15 6 1.8174 -3.4224 -1.0175 16 8 2.8923 -3.2017 -1.8128 17 6 3.3071 -4.2295 -2.5804 18 1 2.7401 -5.1484 -2.6049 19 6 4.4621 -4.1067 -3.3384 20 7 4.8670 -5.1096 -4.0868 21 14 5.4432 -2.5177 -3.2954 22 1 6.4581 -2.5917 -2.2140 23 1 6.1238 -2.3208 -4.6005 24 1 4.5274 -1.3774 -3.0377 25 1 -0.3635 0.0388 1.0269 26 1 -0.3633 0.8699 -0.5472 27 1 -0.3632 -0.9089 -0.4799 28 1 1.6083 2.0284 0.5137 29 1 3.1498 1.1385 0.5139 30 1 3.0417 0.9506 -1.9563 31 1 1.5002 1.8406 -1.9564 32 1 3.8701 3.2017 -0.5859 33 1 1.5096 4.1141 -2.4380 34 1 2.7078 5.2244 -1.5819 35 1 4.6225 4.1199 -2.8275 36 1 3.4246 3.0095 -3.6843 37 1 -0.0271 -1.9340 1.4201 38 1 -1.2425 -4.0611 1.2423 39 1 -0.5133 -5.7761 -0.3631 40 1 1.4313 -5.3757 -1.8096 41 1 5.6746 -5.0237 -4.6173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154097480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:12 Heat of formation + Delta-G solvation = -7.605024 kcal Electronic energy + Delta-G solvation = -23146.003909 eV Core-core repulsion = 19799.829648 eV Total energy + Delta-G solvation = -3346.174261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01660 -38.60843 -37.51583 -36.55747 -35.16148 -32.46383 -31.57807 -29.76881 -29.25441 -26.54247 -25.39799 -24.35568 -22.49400 -22.23725 -21.33592 -20.46610 -19.27343 -17.98924 -17.35210 -16.52378 -15.91214 -15.84674 -14.99458 -14.82042 -14.48989 -14.13355 -13.97645 -13.82720 -13.68331 -13.54369 -12.85436 -12.56673 -12.44008 -12.25267 -12.21267 -12.10124 -11.63857 -11.39936 -11.34959 -11.23053 -11.09472 -10.79661 -10.75697 -10.38523 -10.20305 -9.88762 -9.62371 -9.17001 -8.90825 -8.37531 -8.33575 -7.50214 -6.47819 -4.13878 1.67559 2.16109 3.20358 3.26134 3.35062 3.44724 3.51984 3.74402 4.27632 4.38699 4.65214 4.70540 4.85924 4.86865 4.97269 5.06431 5.22363 5.28895 5.37731 5.39461 5.51275 5.54196 5.61606 5.65738 5.69398 5.82450 5.84399 5.87932 6.00930 6.04272 6.07115 6.20084 6.36721 6.38285 6.53407 6.82021 6.87003 6.99490 7.14611 7.46790 7.64423 7.76816 7.94310 8.72858 8.87324 9.48126 10.58140 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.006907 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.064046 B = 4052.974717 C = 6181.210043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.123 3.877 4 C -0.108 4.108 5 C -0.146 4.146 6 C -0.182 4.182 7 C -0.182 4.182 8 C 0.574 3.426 9 O -0.524 6.524 10 C -0.217 4.217 11 C -0.046 4.046 12 C -0.217 4.217 13 C -0.055 4.055 14 C -0.224 4.224 15 C 0.199 3.801 16 O -0.189 6.189 17 C -0.393 4.393 18 H 0.109 0.891 19 C 0.071 3.929 20 N -0.871 5.871 21 Si 0.905 3.095 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.256 1.256 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 13.102 6.492 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.358 5.358 3 C 0.000 4.000 4 C -0.147 4.147 5 C -0.165 4.165 6 C -0.219 4.219 7 C -0.219 4.219 8 C 0.364 3.636 9 O -0.399 6.399 10 C -0.222 4.222 11 C -0.064 4.064 12 C -0.236 4.236 13 C -0.074 4.074 14 C -0.243 4.243 15 C 0.142 3.858 16 O -0.091 6.091 17 C -0.468 4.468 18 H 0.126 0.874 19 C -0.134 4.134 20 N -0.507 5.507 21 Si 0.731 3.269 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.180 1.180 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.896 13.203 6.321 17.130 hybrid contribution 0.359 0.414 -0.183 0.578 sum -8.537 13.617 6.138 17.204 Atomic orbital electron populations 1.21918 0.79951 1.03484 1.01111 1.47760 1.06757 1.05696 1.75580 1.21328 0.97854 0.84393 0.96405 1.21581 0.99820 0.95326 0.97924 1.22228 1.02782 0.94095 0.97418 1.23041 0.97344 0.96804 1.04694 1.22971 0.98767 1.04104 0.96013 1.18273 0.86919 0.83242 0.75182 1.90766 1.13863 1.87112 1.48177 1.18765 1.02465 0.95838 1.05126 1.20841 0.92341 0.96886 0.96363 1.20558 1.03416 0.95489 1.04089 1.20958 0.94806 0.97851 0.93744 1.21260 0.99043 0.98961 1.05018 1.18926 0.87032 0.91656 0.88141 1.83620 1.38978 1.39027 1.47449 1.20836 1.09960 0.93898 1.22124 0.87355 1.24463 0.95782 0.98614 0.94568 1.69633 1.23954 1.30819 1.26322 0.86154 0.80476 0.83152 0.77161 1.19533 1.20979 1.17995 0.93014 0.91903 0.89909 0.90921 0.89890 0.90724 0.91801 0.87689 0.88941 0.89092 0.88901 0.88761 0.86337 0.86926 0.86814 0.84414 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 9.06 59.85 0.54 1.47 16 2 N -0.62 -9.92 2.87 -182.81 -0.53 -10.45 16 3 C 0.12 1.71 5.41 -4.04 -0.02 1.69 16 4 C -0.11 -1.52 5.82 -26.73 -0.16 -1.68 16 5 C -0.15 -1.73 5.73 -90.62 -0.52 -2.25 16 6 C -0.18 -1.79 10.18 -26.69 -0.27 -2.06 16 7 C -0.18 -2.05 10.25 -26.69 -0.27 -2.33 16 8 C 0.57 11.96 6.97 -12.47 -0.09 11.88 16 9 O -0.52 -13.11 16.05 -4.80 -0.08 -13.19 16 10 C -0.22 -4.46 4.94 -104.81 -0.52 -4.98 16 11 C -0.05 -0.74 7.59 -39.20 -0.30 -1.04 16 12 C -0.22 -3.33 10.02 -39.61 -0.40 -3.73 16 13 C -0.06 -0.94 10.03 -39.53 -0.40 -1.33 16 14 C -0.22 -4.71 9.16 -39.44 -0.36 -5.07 16 15 C 0.20 4.69 6.63 -38.60 -0.26 4.43 16 16 O -0.19 -5.19 7.61 -9.30 -0.07 -5.27 16 17 C -0.39 -11.25 9.95 30.90 0.31 -10.95 16 18 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 19 C 0.07 2.03 5.49 -17.51 -0.10 1.94 16 20 N -0.87 -25.33 13.96 55.48 0.77 -24.55 16 21 Si 0.91 23.30 28.62 -169.99 -4.86 18.44 16 22 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.26 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.05 0.50 7.48 -51.93 -0.39 0.11 16 26 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.08 1.06 5.69 -51.92 -0.30 0.77 16 28 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 29 H 0.08 1.29 7.36 -51.93 -0.38 0.91 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 0.83 7.87 -51.93 -0.41 0.42 16 32 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 33 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.12 1.56 6.44 -52.49 -0.34 1.22 16 38 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.14 3.01 5.64 -52.49 -0.30 2.72 16 41 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -32.67 342.88 -8.14 -40.81 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.74 Total: 3.05 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.80 Total: -14.01 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.25 Total: -35.00 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.15 Total: -18.45 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.86 Total: 18.44 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.67 -8.14 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154097480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.209 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds