Wall clock time and date at job start Tue Mar 31 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99753 * 2 1 4 4 C 1.53001 * 109.47006 * 269.99097 * 3 2 1 5 5 C 1.53003 * 109.47120 * 179.97438 * 4 3 2 6 6 C 1.53004 * 117.50135 * 243.74835 * 5 4 3 7 7 C 1.53000 * 117.49759 * 175.08742 * 5 4 3 8 8 C 1.34777 * 119.99826 * 179.97438 * 2 1 3 9 9 O 1.21595 * 119.99798 * 184.64257 * 8 2 1 10 10 C 1.47534 * 120.00506 * 4.63893 * 8 2 1 11 11 C 1.39668 * 120.19457 * 311.86889 * 10 8 2 12 12 C 1.37824 * 119.91545 * 180.02562 * 11 10 8 13 13 C 1.38575 * 120.32777 * 359.97438 * 12 11 10 14 14 C 1.38027 * 120.39916 * 0.02562 * 13 12 11 15 15 C 1.38835 * 120.06982 * 0.02562 * 14 13 12 16 16 O 1.35519 * 120.15900 * 179.97438 * 15 14 13 17 17 C 1.34821 * 116.99942 * 354.04808 * 16 15 14 18 18 H 1.08002 * 120.00078 * 5.04215 * 17 16 15 19 19 C 1.38701 * 119.99759 * 185.04656 * 17 16 15 20 20 N 1.31521 * 119.99316 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00198 * 0.02562 * 19 17 16 22 22 H 1.48488 * 109.47320 * 89.99894 * 21 19 17 23 23 H 1.48502 * 109.46764 * 210.00230 * 21 19 17 24 24 H 1.48507 * 109.46844 * 329.99439 * 21 19 17 25 25 H 1.08999 * 109.47836 * 272.16637 * 1 2 3 26 26 H 1.09000 * 109.47196 * 32.17216 * 1 2 3 27 27 H 1.09008 * 109.46461 * 152.16668 * 1 2 3 28 28 H 1.09001 * 109.47234 * 29.99476 * 3 2 1 29 29 H 1.09003 * 109.47153 * 149.99623 * 3 2 1 30 30 H 1.09001 * 109.47433 * 300.00256 * 4 3 2 31 31 H 1.09003 * 109.46736 * 60.00270 * 4 3 2 32 32 H 1.08994 * 115.54842 * 29.42388 * 5 4 3 33 33 H 1.09001 * 117.49146 * 0.02562 * 6 5 4 34 34 H 1.09000 * 117.49619 * 145.02228 * 6 5 4 35 35 H 1.08999 * 117.50175 * 214.98227 * 7 5 4 36 36 H 1.09003 * 117.49756 * 0.02562 * 7 5 4 37 37 H 1.07996 * 120.04055 * 359.97438 * 11 10 8 38 38 H 1.08007 * 119.83791 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.79702 * 179.74618 * 13 12 11 40 40 H 1.07991 * 119.96154 * 180.02562 * 14 13 12 41 41 H 0.97006 * 119.99566 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2170 3.0357 -1.4426 6 6 2.5157 4.2557 -2.0432 7 6 3.6709 3.5893 -2.7947 8 6 2.1388 -1.1672 0.0005 9 8 3.3518 -1.1689 0.0858 10 6 1.4049 -2.4429 -0.1022 11 6 0.2958 -2.6828 0.7121 12 6 -0.3853 -3.8767 0.6117 13 6 0.0243 -4.8419 -0.2944 14 6 1.1185 -4.6188 -1.1056 15 6 1.8174 -3.4224 -1.0175 16 8 2.8923 -3.2017 -1.8128 17 6 3.3071 -4.2295 -2.5804 18 1 2.7401 -5.1484 -2.6049 19 6 4.4621 -4.1067 -3.3384 20 7 4.8670 -5.1096 -4.0868 21 14 5.4432 -2.5177 -3.2954 22 1 6.4581 -2.5917 -2.2140 23 1 6.1238 -2.3208 -4.6005 24 1 4.5274 -1.3774 -3.0377 25 1 -0.3635 0.0388 1.0269 26 1 -0.3633 0.8699 -0.5472 27 1 -0.3632 -0.9089 -0.4799 28 1 1.6083 2.0284 0.5137 29 1 3.1498 1.1385 0.5139 30 1 3.0417 0.9506 -1.9563 31 1 1.5002 1.8406 -1.9564 32 1 3.8701 3.2017 -0.5859 33 1 1.5096 4.1141 -2.4380 34 1 2.7078 5.2244 -1.5819 35 1 4.6225 4.1199 -2.8275 36 1 3.4246 3.0095 -3.6843 37 1 -0.0271 -1.9340 1.4201 38 1 -1.2425 -4.0611 1.2423 39 1 -0.5133 -5.7761 -0.3631 40 1 1.4313 -5.3757 -1.8096 41 1 5.6746 -5.0237 -4.6173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154097480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:11 Heat of formation + Delta-G solvation = -27.423913 kcal Electronic energy + Delta-G solvation = -23146.863320 eV Core-core repulsion = 19799.829648 eV Total energy + Delta-G solvation = -3347.033672 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57463 -40.19110 -38.58012 -38.17524 -36.54003 -34.55380 -32.90826 -31.06238 -30.85367 -27.66952 -27.37404 -25.67602 -23.73937 -23.26409 -22.90896 -21.45241 -20.76094 -19.90890 -18.97880 -18.05639 -17.34208 -16.95961 -16.59742 -16.25509 -15.89868 -15.64992 -15.52779 -15.45629 -15.03334 -14.84829 -14.39159 -14.15514 -14.12200 -13.86877 -13.38220 -13.28453 -13.04447 -12.78704 -12.60719 -12.48001 -12.37410 -12.33262 -12.16652 -12.14288 -11.55279 -11.28527 -11.01383 -10.86473 -10.78370 -9.83841 -9.64819 -9.16696 -8.61197 -6.30186 0.16241 0.62314 1.15960 1.24107 1.42003 1.72144 2.11976 2.18982 2.69696 2.85004 2.93549 3.10864 3.64518 3.71299 3.93487 3.97868 4.04158 4.15143 4.24420 4.30713 4.37306 4.47857 4.53245 4.56012 4.57339 4.72263 4.74848 4.80261 4.92719 4.97482 4.98530 5.03756 5.09057 5.22597 5.29060 5.32216 5.47258 5.58875 5.65085 5.68166 5.82318 6.14560 6.36821 6.75258 7.21988 7.53105 8.50009 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.006907 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.064046 B = 4052.974717 C = 6181.210043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.614 5.614 3 C 0.122 3.878 4 C -0.100 4.100 5 C -0.162 4.162 6 C -0.151 4.151 7 C -0.199 4.199 8 C 0.561 3.439 9 O -0.583 6.583 10 C -0.224 4.224 11 C -0.035 4.035 12 C -0.182 4.182 13 C -0.048 4.048 14 C -0.244 4.244 15 C 0.155 3.845 16 O -0.233 6.233 17 C -0.398 4.398 18 H 0.094 0.906 19 C 0.026 3.974 20 N -0.910 5.910 21 Si 0.956 3.044 22 H -0.278 1.278 23 H -0.257 1.257 24 H -0.281 1.281 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.120 0.880 29 H 0.059 0.941 30 H 0.018 0.982 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.115 0.885 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.874 15.370 9.165 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.346 5.346 3 C 0.000 4.000 4 C -0.139 4.139 5 C -0.181 4.181 6 C -0.188 4.188 7 C -0.236 4.236 8 C 0.352 3.648 9 O -0.464 6.464 10 C -0.228 4.228 11 C -0.053 4.053 12 C -0.200 4.200 13 C -0.066 4.066 14 C -0.263 4.263 15 C 0.103 3.897 16 O -0.139 6.139 17 C -0.474 4.474 18 H 0.111 0.889 19 C -0.174 4.174 20 N -0.550 5.550 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.182 1.182 24 H -0.206 1.206 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.138 0.862 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.098 0.902 37 H 0.181 0.819 38 H 0.186 0.814 39 H 0.170 0.830 40 H 0.133 0.867 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.955 15.503 9.013 22.123 hybrid contribution 1.189 -0.242 -0.722 1.412 sum -11.766 15.261 8.291 20.978 Atomic orbital electron populations 1.22272 0.76845 1.04365 1.03816 1.47867 1.08724 1.04805 1.73226 1.21509 0.97699 0.84458 0.96369 1.21458 0.99723 0.95089 0.97613 1.22182 1.03909 0.94002 0.97989 1.23124 0.96949 0.96426 1.02307 1.23050 1.00429 1.04815 0.95281 1.18554 0.86416 0.84848 0.75007 1.90730 1.16365 1.88068 1.51204 1.19166 1.03553 0.95248 1.04827 1.21371 0.90237 0.98363 0.95303 1.21242 1.03253 0.93475 1.02001 1.21429 0.92961 0.99883 0.92315 1.21311 1.00911 0.97884 1.06241 1.19630 0.86875 0.93823 0.89329 1.83597 1.41778 1.38719 1.49768 1.20818 1.10001 0.94100 1.22465 0.88862 1.24987 0.96713 1.00651 0.95029 1.69672 1.25146 1.31950 1.28246 0.85442 0.78808 0.79875 0.77812 1.20412 1.18169 1.20597 0.89294 0.89108 0.90960 0.86157 0.92261 0.96310 0.90528 0.87214 0.88019 0.86834 0.87951 0.90165 0.81933 0.81392 0.83039 0.86690 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 9.06 127.77 1.16 2.46 16 2 N -0.61 -18.56 2.87 -850.53 -2.44 -21.00 16 3 C 0.12 3.24 5.41 86.38 0.47 3.71 16 4 C -0.10 -2.84 5.82 30.60 0.18 -2.66 16 5 C -0.16 -3.70 5.73 -10.79 -0.06 -3.77 16 6 C -0.15 -2.55 10.18 30.62 0.31 -2.24 16 7 C -0.20 -4.40 10.25 30.62 0.31 -4.09 16 8 C 0.56 23.74 6.97 86.69 0.60 24.34 16 9 O -0.58 -30.93 16.05 5.63 0.09 -30.84 16 10 C -0.22 -9.06 4.94 -19.99 -0.10 -9.16 16 11 C -0.03 -0.97 7.59 22.52 0.17 -0.80 16 12 C -0.18 -4.49 10.02 22.25 0.22 -4.27 16 13 C -0.05 -1.46 10.03 22.30 0.22 -1.24 16 14 C -0.24 -10.47 9.16 22.36 0.20 -10.27 16 15 C 0.16 7.62 6.63 22.91 0.15 7.78 16 16 O -0.23 -13.79 7.61 -10.47 -0.08 -13.87 16 17 C -0.40 -24.58 9.95 67.93 0.68 -23.90 16 18 H 0.09 5.81 5.44 -2.91 -0.02 5.80 16 19 C 0.03 1.61 5.49 84.85 0.47 2.08 16 20 N -0.91 -56.01 13.96 21.62 0.30 -55.71 16 21 Si 0.96 51.66 28.62 68.60 1.96 53.62 16 22 H -0.28 -15.15 7.11 99.48 0.71 -14.44 16 23 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -16.08 7.11 99.48 0.71 -15.37 16 25 H 0.09 1.11 7.48 -2.39 -0.02 1.09 16 26 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 27 H 0.07 1.56 5.69 -2.38 -0.01 1.55 16 28 H 0.12 2.08 8.07 -2.39 -0.02 2.06 16 29 H 0.06 1.88 7.36 -2.39 -0.02 1.86 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 1.90 7.87 -2.39 -0.02 1.88 16 32 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 33 H 0.10 1.55 8.03 -2.39 -0.02 1.54 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.16 3.16 6.44 -2.91 -0.02 3.14 16 38 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.12 5.39 5.64 -2.92 -0.02 5.37 16 41 H 0.29 16.20 8.31 -92.70 -0.77 15.43 16 Total: -1.00 -81.84 342.88 5.85 -75.99 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.03 Total: 13.84 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 4.99 Total: -22.03 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -2.14 Total: -76.71 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: 0.01 Total: -44.71 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 1.96 Total: 53.62 kcal Total: -81.84 5.85 -75.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154097480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.565 kcal (2) G-P(sol) polarization free energy of solvation -81.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds