Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46504 * 120.00352 * 2 1 4 4 C 1.50694 * 109.46982 * 270.00324 * 3 2 1 5 5 H 1.07998 * 120.00399 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99745 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00044 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00013 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47182 * 89.99559 * 8 6 4 10 10 H 1.48499 * 109.47008 * 210.00260 * 8 6 4 11 11 H 1.48503 * 109.46944 * 329.99654 * 8 6 4 12 12 C 1.34771 * 119.99905 * 179.97438 * 2 1 3 13 13 O 1.21592 * 120.00446 * 184.41649 * 12 2 1 14 14 C 1.47542 * 120.00052 * 4.41588 * 12 2 1 15 15 C 1.39706 * 120.19088 * 310.87854 * 14 12 2 16 16 C 1.37781 * 119.90540 * 180.02562 * 15 14 12 17 17 C 1.38543 * 120.30400 * 359.97438 * 16 15 14 18 18 C 1.38058 * 120.39220 * 359.72340 * 17 16 15 19 19 C 1.38715 * 120.07996 * 0.55569 * 18 17 16 20 20 O 1.35651 * 120.15085 * 179.72418 * 19 18 17 21 21 C 1.42899 * 116.99877 * 359.72207 * 20 19 18 22 22 C 1.52996 * 109.46928 * 180.02562 * 21 20 19 23 23 C 1.53001 * 117.50012 * 184.99746 * 22 21 20 24 24 C 1.52995 * 60.00238 * 252.51250 * 23 22 21 25 25 H 1.08998 * 109.46641 * 273.01763 * 1 2 3 26 26 H 1.08998 * 109.46432 * 33.01657 * 1 2 3 27 27 H 1.08993 * 109.47060 * 153.01613 * 1 2 3 28 28 H 1.09005 * 109.46640 * 30.00022 * 3 2 1 29 29 H 1.08993 * 109.47258 * 149.99805 * 3 2 1 30 30 H 0.97003 * 119.99579 * 180.02562 * 7 6 4 31 31 H 1.08001 * 120.04912 * 359.97438 * 15 14 12 32 32 H 1.08003 * 119.85149 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.81100 * 180.02562 * 17 16 15 34 34 H 1.07997 * 119.96134 * 180.30239 * 18 17 16 35 35 H 1.08992 * 109.47267 * 60.00477 * 21 20 19 36 36 H 1.08997 * 109.47411 * 300.00176 * 21 20 19 37 37 H 1.09003 * 115.56550 * 330.69168 * 22 21 20 38 38 H 1.09003 * 117.49952 * 145.01884 * 23 22 21 39 39 H 1.09001 * 117.49763 * 0.02562 * 23 22 21 40 40 H 1.08997 * 117.50091 * 107.48754 * 24 23 22 41 41 H 1.09001 * 117.49865 * 252.48383 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1977 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5527 3.6185 -0.6730 8 14 3.4381 3.4169 -3.4339 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2002 -3.4960 11 1 3.5563 2.2195 -4.3043 12 6 2.1389 -1.1672 0.0005 13 8 3.3521 -1.1688 0.0816 14 6 1.4045 -2.4431 -0.0973 15 6 0.3105 -2.6896 0.7359 16 6 -0.3708 -3.8834 0.6399 17 6 0.0235 -4.8413 -0.2800 18 6 1.0990 -4.6082 -1.1137 19 6 1.8000 -3.4144 -1.0268 20 8 2.8604 -3.1861 -1.8415 21 6 3.2052 -4.2222 -2.7632 22 6 4.4168 -3.7869 -3.5898 23 6 4.8717 -4.7139 -4.7189 24 6 5.7037 -4.6008 -3.4399 25 1 -0.3632 0.0541 1.0262 26 1 -0.3632 0.8617 -0.5600 27 1 -0.3633 -0.9157 -0.4663 28 1 1.6085 2.0284 0.5139 29 1 3.1500 1.1384 0.5138 30 1 4.0289 4.4447 -0.8504 31 1 -0.0003 -1.9459 1.4547 32 1 -1.2162 -4.0732 1.2847 33 1 -0.5165 -5.7741 -0.3487 34 1 1.3974 -5.3578 -1.8316 35 1 2.3621 -4.4136 -3.4268 36 1 3.4486 -5.1314 -2.2135 37 1 4.5162 -2.7132 -3.7494 38 1 5.2702 -4.2500 -5.6212 39 1 4.3075 -5.6337 -4.8730 40 1 5.6871 -5.4464 -2.7523 41 1 6.6498 -4.0630 -3.5008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161039690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = -14.191133 kcal Electronic energy + Delta-G solvation = -22964.717120 eV Core-core repulsion = 19618.257264 eV Total energy + Delta-G solvation = -3346.459856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37110 -38.63946 -37.55202 -36.55822 -34.67083 -32.63117 -31.15543 -30.06186 -27.84562 -27.30728 -25.83663 -23.85475 -22.56336 -22.48286 -21.85751 -20.62444 -19.08174 -17.85008 -16.59943 -16.44715 -16.33016 -15.82967 -15.34846 -14.95908 -14.82232 -14.51392 -14.18283 -14.01215 -13.84988 -12.94774 -12.77061 -12.69149 -12.22592 -12.08172 -11.84256 -11.68459 -11.66294 -11.33958 -11.28313 -11.12195 -10.96331 -10.82574 -10.55595 -10.52578 -10.10391 -10.04194 -9.57227 -8.99689 -8.75569 -8.38029 -8.10604 -7.53997 -5.98660 -4.02704 1.16369 1.46823 3.11580 3.33310 3.39241 3.42182 3.46958 3.72665 3.83371 4.18747 4.49293 4.57773 4.73637 4.81680 4.83415 4.92803 5.05579 5.11642 5.22312 5.34254 5.37885 5.41021 5.43103 5.48927 5.62545 5.76317 5.77018 5.90522 5.97484 5.99214 6.16221 6.26689 6.30333 6.32722 6.46929 6.77252 7.12986 7.49963 7.54728 7.63134 7.98742 8.30345 8.49537 8.97133 9.18914 9.61967 11.09464 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.006018 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.071218 B = 4651.313562 C = 6631.510069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.554 3.446 13 O -0.526 6.526 14 C -0.149 4.149 15 C -0.053 4.053 16 C -0.168 4.168 17 C -0.069 4.069 18 C -0.220 4.220 19 C 0.175 3.825 20 O -0.285 6.285 21 C 0.091 3.909 22 C -0.155 4.155 23 C -0.172 4.172 24 C -0.174 4.174 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 -18.643 -2.326 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.329 5.329 3 C 0.127 3.873 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.340 3.660 13 O -0.402 6.402 14 C -0.153 4.153 15 C -0.072 4.072 16 C -0.187 4.187 17 C -0.087 4.087 18 C -0.239 4.239 19 C 0.128 3.872 20 O -0.197 6.197 21 C 0.016 3.984 22 C -0.173 4.173 23 C -0.209 4.209 24 C -0.211 4.211 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.008 -18.257 -2.264 19.353 hybrid contribution 0.000 0.187 -1.074 1.090 sum -6.008 -18.070 -3.338 19.333 Atomic orbital electron populations 1.21799 0.81647 1.02650 1.00314 1.48049 1.06100 1.07500 1.71288 1.19295 0.92640 0.77870 0.97522 1.21450 1.36288 1.06131 0.92346 0.92461 1.24924 0.95410 0.96415 0.97348 1.69938 1.38607 1.14294 1.30652 0.86513 0.77641 0.78550 0.84832 1.20660 1.21095 1.19914 1.17875 0.87130 0.83005 0.77993 1.90762 1.13341 1.86885 1.49260 1.19608 0.99492 0.96269 0.99904 1.21256 0.92115 0.97088 0.96710 1.20927 1.02013 0.94384 1.01343 1.20979 0.95099 0.98662 0.93982 1.21156 1.00373 0.97509 1.04874 1.18947 0.86423 0.92362 0.89502 1.86278 1.44236 1.42208 1.46942 1.22309 0.96361 0.89542 0.90232 1.22114 0.94635 0.99821 1.00762 1.22975 1.03730 1.01034 0.93113 1.23070 0.95652 1.02470 0.99877 0.93723 0.91018 0.91965 0.94918 0.93666 0.92782 0.84705 0.85606 0.85810 0.85365 0.91717 0.91991 0.86051 0.88229 0.88748 0.88674 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 9.09 59.85 0.54 1.92 16 2 N -0.60 -13.67 2.86 -184.19 -0.53 -14.19 16 3 C 0.25 6.73 5.21 -5.19 -0.03 6.70 16 4 C -0.52 -15.41 9.39 -34.44 -0.32 -15.73 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 8 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.55 12.93 6.95 -12.47 -0.09 12.84 16 13 O -0.53 -14.59 16.09 -3.86 -0.06 -14.65 16 14 C -0.15 -2.74 4.90 -104.84 -0.51 -3.25 16 15 C -0.05 -0.75 7.61 -39.20 -0.30 -1.05 16 16 C -0.17 -1.91 10.02 -39.64 -0.40 -2.31 16 17 C -0.07 -0.75 10.03 -39.53 -0.40 -1.15 16 18 C -0.22 -2.83 9.03 -39.47 -0.36 -3.19 16 19 C 0.18 3.00 6.68 -38.69 -0.26 2.74 16 20 O -0.28 -5.31 9.18 -27.80 -0.26 -5.56 16 21 C 0.09 1.21 5.02 37.16 0.19 1.40 16 22 C -0.16 -2.05 6.06 -90.62 -0.55 -2.60 16 23 C -0.17 -1.68 10.25 -26.73 -0.27 -1.96 16 24 C -0.17 -1.93 10.18 -26.73 -0.27 -2.20 16 25 H 0.04 0.64 7.56 -51.93 -0.39 0.25 16 26 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 27 H 0.06 0.95 5.68 -51.93 -0.29 0.65 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.14 1.71 6.57 -52.49 -0.35 1.37 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.13 1.31 6.30 -52.49 -0.33 0.98 16 35 H 0.06 0.73 7.65 -51.93 -0.40 0.34 16 36 H 0.06 0.71 7.41 -51.93 -0.38 0.32 16 37 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 345.68 15.07 5.21 5.21 Total: -1.00 -35.66 345.68 -8.90 -44.56 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.87 Total: -0.13 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.12 Total: -6.15 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.21 Total: -40.68 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.32 Total: -20.21 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.66 -8.90 -44.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161039690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.372 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds