Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46504 * 120.00352 * 2 1 4 4 C 1.50694 * 109.46982 * 270.00324 * 3 2 1 5 5 H 1.07998 * 120.00399 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99745 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00044 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00013 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47182 * 89.99559 * 8 6 4 10 10 H 1.48499 * 109.47008 * 210.00260 * 8 6 4 11 11 H 1.48503 * 109.46944 * 329.99654 * 8 6 4 12 12 C 1.34771 * 119.99905 * 179.97438 * 2 1 3 13 13 O 1.21592 * 120.00446 * 184.41649 * 12 2 1 14 14 C 1.47542 * 120.00052 * 4.41588 * 12 2 1 15 15 C 1.39706 * 120.19088 * 310.87854 * 14 12 2 16 16 C 1.37781 * 119.90540 * 180.02562 * 15 14 12 17 17 C 1.38543 * 120.30400 * 359.97438 * 16 15 14 18 18 C 1.38058 * 120.39220 * 359.72340 * 17 16 15 19 19 C 1.38715 * 120.07996 * 0.55569 * 18 17 16 20 20 O 1.35651 * 120.15085 * 179.72418 * 19 18 17 21 21 C 1.42899 * 116.99877 * 359.72207 * 20 19 18 22 22 C 1.52996 * 109.46928 * 180.02562 * 21 20 19 23 23 C 1.53001 * 117.50012 * 184.99746 * 22 21 20 24 24 C 1.52995 * 60.00238 * 252.51250 * 23 22 21 25 25 H 1.08998 * 109.46641 * 273.01763 * 1 2 3 26 26 H 1.08998 * 109.46432 * 33.01657 * 1 2 3 27 27 H 1.08993 * 109.47060 * 153.01613 * 1 2 3 28 28 H 1.09005 * 109.46640 * 30.00022 * 3 2 1 29 29 H 1.08993 * 109.47258 * 149.99805 * 3 2 1 30 30 H 0.97003 * 119.99579 * 180.02562 * 7 6 4 31 31 H 1.08001 * 120.04912 * 359.97438 * 15 14 12 32 32 H 1.08003 * 119.85149 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.81100 * 180.02562 * 17 16 15 34 34 H 1.07997 * 119.96134 * 180.30239 * 18 17 16 35 35 H 1.08992 * 109.47267 * 60.00477 * 21 20 19 36 36 H 1.08997 * 109.47411 * 300.00176 * 21 20 19 37 37 H 1.09003 * 115.56550 * 330.69168 * 22 21 20 38 38 H 1.09003 * 117.49952 * 145.01884 * 23 22 21 39 39 H 1.09001 * 117.49763 * 0.02562 * 23 22 21 40 40 H 1.08997 * 117.50091 * 107.48754 * 24 23 22 41 41 H 1.09001 * 117.49865 * 252.48383 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1977 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0982 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5527 3.6185 -0.6730 8 14 3.4381 3.4169 -3.4339 9 1 2.3079 4.2591 -3.9014 10 1 4.6981 4.2002 -3.4960 11 1 3.5563 2.2195 -4.3043 12 6 2.1389 -1.1672 0.0005 13 8 3.3521 -1.1688 0.0816 14 6 1.4045 -2.4431 -0.0973 15 6 0.3105 -2.6896 0.7359 16 6 -0.3708 -3.8834 0.6399 17 6 0.0235 -4.8413 -0.2800 18 6 1.0990 -4.6082 -1.1137 19 6 1.8000 -3.4144 -1.0268 20 8 2.8604 -3.1861 -1.8415 21 6 3.2052 -4.2222 -2.7632 22 6 4.4168 -3.7869 -3.5898 23 6 4.8717 -4.7139 -4.7189 24 6 5.7037 -4.6008 -3.4399 25 1 -0.3632 0.0541 1.0262 26 1 -0.3632 0.8617 -0.5600 27 1 -0.3633 -0.9157 -0.4663 28 1 1.6085 2.0284 0.5139 29 1 3.1500 1.1384 0.5138 30 1 4.0289 4.4447 -0.8504 31 1 -0.0003 -1.9459 1.4547 32 1 -1.2162 -4.0732 1.2847 33 1 -0.5165 -5.7741 -0.3487 34 1 1.3974 -5.3578 -1.8316 35 1 2.3621 -4.4136 -3.4268 36 1 3.4486 -5.1314 -2.2135 37 1 4.5162 -2.7132 -3.7494 38 1 5.2702 -4.2500 -5.6212 39 1 4.3075 -5.6337 -4.8730 40 1 5.6871 -5.4464 -2.7523 41 1 6.6498 -4.0630 -3.5008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161039690.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = -36.897706 kcal Electronic energy + Delta-G solvation = -22965.701751 eV Core-core repulsion = 19618.257264 eV Total energy + Delta-G solvation = -3347.444487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61716 -40.14951 -38.69500 -37.58837 -36.57990 -34.78954 -32.43731 -31.09788 -29.71317 -28.44898 -27.47034 -25.63342 -23.86998 -23.37110 -23.10152 -21.67900 -20.56905 -19.05196 -18.71463 -18.06894 -17.56862 -17.02166 -16.97355 -16.32148 -16.16442 -15.79589 -15.65587 -15.36925 -14.93589 -14.46805 -14.22901 -13.95620 -13.78611 -13.66608 -13.48261 -13.11834 -12.89041 -12.74210 -12.59931 -12.49054 -12.38566 -12.26519 -12.21842 -11.97180 -11.76321 -11.47271 -10.95923 -10.69515 -10.67471 -9.92731 -9.48053 -9.18263 -8.25874 -6.40962 0.06757 0.44424 1.31190 1.35130 1.45569 1.85871 2.10145 2.30729 2.42704 2.81059 2.84092 3.02758 3.61457 3.69108 3.81863 3.89251 4.00883 4.03879 4.13183 4.26674 4.35199 4.44852 4.46527 4.51355 4.59235 4.64848 4.69446 4.84679 4.91473 4.92686 5.00035 5.12350 5.17376 5.17574 5.27311 5.38262 5.49685 5.52532 5.81075 5.84883 6.02891 6.45273 6.65649 6.73478 7.23719 7.43824 8.81417 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.006018 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.071218 B = 4651.313562 C = 6631.510069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.605 5.605 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.046 0.954 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.546 3.454 13 O -0.592 6.592 14 C -0.189 4.189 15 C -0.054 4.054 16 C -0.154 4.154 17 C -0.050 4.050 18 C -0.215 4.215 19 C 0.148 3.852 20 O -0.335 6.335 21 C 0.089 3.911 22 C -0.193 4.193 23 C -0.139 4.139 24 C -0.177 4.177 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.029 0.971 29 H -0.003 1.003 30 H 0.269 0.731 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 -21.733 -3.438 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.336 5.336 3 C 0.139 3.861 4 C -0.583 4.583 5 H 0.064 0.936 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.792 3.208 9 H -0.183 1.183 10 H -0.201 1.201 11 H -0.203 1.203 12 C 0.335 3.665 13 O -0.474 6.474 14 C -0.193 4.193 15 C -0.073 4.073 16 C -0.172 4.172 17 C -0.068 4.068 18 C -0.233 4.233 19 C 0.101 3.899 20 O -0.248 6.248 21 C 0.015 3.985 22 C -0.211 4.211 23 C -0.175 4.175 24 C -0.214 4.214 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.047 0.953 29 H 0.015 0.985 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.186 0.814 33 H 0.189 0.811 34 H 0.174 0.826 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.128 0.872 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.857 -21.356 -3.370 23.364 hybrid contribution 0.831 1.071 -0.670 1.512 sum -8.025 -20.285 -4.040 22.186 Atomic orbital electron populations 1.22070 0.78040 1.03619 1.02670 1.48074 1.08372 1.06071 1.71059 1.18772 0.91111 0.80050 0.96145 1.21644 1.37223 1.06598 0.92822 0.93578 1.25858 0.94688 0.96251 1.02194 1.70051 1.38831 1.14725 1.33003 0.85416 0.78432 0.78097 0.78871 1.18282 1.20137 1.20292 1.18798 0.86779 0.84742 0.76142 1.90693 1.16419 1.88079 1.52181 1.19396 1.01941 0.94372 1.03596 1.21427 0.90985 0.98902 0.95938 1.21404 1.02018 0.92626 1.01173 1.21589 0.93560 0.99924 0.91733 1.21497 1.00159 0.96079 1.05610 1.19319 0.86999 0.93809 0.89751 1.86227 1.45443 1.44893 1.48240 1.22545 0.96855 0.89099 0.89966 1.22109 0.96460 0.98328 1.04228 1.23099 1.01744 1.00570 0.92133 1.23177 0.94543 1.02253 1.01446 0.90349 0.91600 0.89561 0.95276 0.98512 0.92246 0.83790 0.81432 0.81100 0.82572 0.89721 0.89941 0.90247 0.87552 0.85888 0.87213 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.68 9.09 127.77 1.16 3.84 16 2 N -0.61 -29.28 2.86 -854.92 -2.44 -31.73 16 3 C 0.26 15.30 5.21 85.63 0.45 15.74 16 4 C -0.54 -33.84 9.39 25.60 0.24 -33.60 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.55 5.46 84.65 0.46 1.02 16 7 N -0.93 -58.37 13.29 21.45 0.28 -58.08 16 8 Si 0.97 47.21 29.54 68.60 2.03 49.24 16 9 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 12 C 0.55 27.27 6.95 86.70 0.60 27.87 16 13 O -0.59 -36.07 16.09 4.74 0.08 -35.99 16 14 C -0.19 -7.09 4.90 -20.01 -0.10 -7.18 16 15 C -0.05 -1.42 7.61 22.52 0.17 -1.25 16 16 C -0.15 -2.74 10.02 22.23 0.22 -2.51 16 17 C -0.05 -0.82 10.03 22.30 0.22 -0.60 16 18 C -0.21 -4.82 9.03 22.34 0.20 -4.62 16 19 C 0.15 5.08 6.68 22.85 0.15 5.24 16 20 O -0.33 -13.15 9.18 -80.91 -0.74 -13.89 16 21 C 0.09 2.38 5.02 71.98 0.36 2.74 16 22 C -0.19 -5.32 6.06 -10.79 -0.07 -5.39 16 23 C -0.14 -2.52 10.25 30.59 0.31 -2.21 16 24 C -0.18 -3.93 10.18 30.59 0.31 -3.62 16 25 H 0.08 2.15 7.56 -2.39 -0.02 2.14 16 26 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 27 H 0.09 2.55 5.68 -2.39 -0.01 2.54 16 28 H 0.03 1.69 8.07 -2.38 -0.02 1.67 16 29 H 0.00 -0.22 7.36 -2.39 -0.02 -0.24 16 30 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 31 H 0.14 3.37 6.57 -2.91 -0.02 3.35 16 32 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.16 2.53 6.30 -2.91 -0.02 2.51 16 35 H 0.08 1.80 7.65 -2.39 -0.02 1.78 16 36 H 0.08 1.76 7.41 -2.39 -0.02 1.74 16 37 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 2.07 8.03 -2.39 -0.02 2.05 16 41 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -87.28 345.68 4.93 -82.35 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.02 Total: 12.62 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 4.71 Total: -4.52 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -2.16 Total: -89.81 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.67 Total: -49.88 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -87.28 4.93 -82.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161039690.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.449 kcal (2) G-P(sol) polarization free energy of solvation -87.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds