Wall clock time and date at job start Tue Mar 31 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99638 * 2 1 4 4 C 1.53005 * 109.47024 * 66.05077 * 3 2 1 5 5 C 1.50695 * 109.47241 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00254 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00223 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99515 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00151 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47386 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47249 * 120.00129 * 9 7 5 12 12 H 1.48502 * 109.47207 * 239.99855 * 9 7 5 13 13 C 1.46895 * 110.99939 * 236.04937 * 2 1 3 14 14 H 1.08998 * 109.47922 * 310.25257 * 13 2 1 15 15 C 1.53007 * 109.47294 * 70.25535 * 13 2 1 16 16 C 1.52997 * 109.47218 * 179.97438 * 15 13 2 17 17 C 1.52998 * 109.47368 * 299.99945 * 16 15 13 18 18 C 1.53005 * 109.47310 * 59.99518 * 17 16 15 19 19 C 1.52997 * 109.47299 * 300.00525 * 18 17 16 20 20 H 1.08989 * 109.47302 * 299.99772 * 19 18 17 21 21 S 1.81401 * 109.46842 * 179.97438 * 19 18 17 22 22 C 1.81395 * 101.92195 * 60.71471 * 21 19 18 23 23 O 1.42101 * 108.57485 * 175.19670 * 21 19 18 24 24 O 1.42097 * 108.58098 * 306.22479 * 21 19 18 25 25 H 1.09006 * 109.46746 * 177.34705 * 1 2 3 26 26 H 1.09002 * 109.47204 * 57.34903 * 1 2 3 27 27 H 1.09002 * 109.47353 * 297.34466 * 1 2 3 28 28 H 1.09004 * 109.46969 * 186.04115 * 3 2 1 29 29 H 1.08999 * 109.47840 * 306.04779 * 3 2 1 30 30 H 1.09005 * 109.46924 * 299.99608 * 4 3 2 31 31 H 1.08994 * 109.47386 * 59.99559 * 4 3 2 32 32 H 0.97001 * 119.99363 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.46640 * 299.99685 * 15 13 2 34 34 H 1.09002 * 109.47154 * 59.99772 * 15 13 2 35 35 H 1.09003 * 109.47045 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47120 * 59.99903 * 16 15 13 37 37 H 1.09002 * 109.46966 * 300.00052 * 17 16 15 38 38 H 1.08995 * 109.47528 * 180.02562 * 17 16 15 39 39 H 1.08994 * 109.47303 * 179.97438 * 18 17 16 40 40 H 1.09002 * 109.46670 * 60.00353 * 18 17 16 41 41 H 1.09001 * 109.47584 * 59.99381 * 22 21 19 42 42 H 1.08994 * 109.47383 * 180.02562 * 22 21 19 43 43 H 1.09004 * 109.47136 * 299.99747 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0574 1.3184 5 6 2.1718 3.4641 1.3187 6 1 2.7205 3.8320 0.4643 7 6 1.9660 4.2815 2.4098 8 7 1.2975 3.8337 3.4500 9 14 2.6366 6.0250 2.4104 10 1 3.3453 6.2833 1.1313 11 1 1.5147 6.9868 2.5571 12 1 3.5823 6.1912 3.5433 13 6 1.9954 -0.7659 -1.1376 14 1 1.5058 -1.7389 -1.1785 15 6 1.7232 -0.0031 -2.4357 16 6 2.2721 -0.8005 -3.6205 17 6 3.7800 -0.9948 -3.4498 18 6 4.0523 -1.7575 -2.1517 19 6 3.5035 -0.9601 -0.9669 20 1 3.9927 0.0129 -0.9260 21 16 3.8257 -1.8648 0.5720 22 6 5.6371 -1.9592 0.5790 23 8 3.4102 -1.0591 1.6663 24 8 3.3043 -3.1802 0.4416 25 1 -0.3633 -1.0266 -0.0476 26 1 -0.3634 0.5545 -0.8653 27 1 -0.3634 0.4720 0.9128 28 1 3.0796 1.3444 -0.1082 29 1 1.5610 1.9274 -0.8308 30 1 0.5470 2.0844 1.4266 31 1 2.0657 1.5015 2.1492 32 1 1.1530 4.4086 4.2178 33 1 0.6490 0.1356 -2.5571 34 1 2.2129 0.9699 -2.3950 35 1 2.0777 -0.2573 -4.5453 36 1 1.7827 -1.7736 -3.6615 37 1 4.2694 -0.0217 -3.4089 38 1 4.1711 -1.5625 -4.2941 39 1 5.1265 -1.8964 -2.0303 40 1 3.5629 -2.7307 -2.1926 41 1 6.0535 -0.9519 0.5798 42 1 5.9699 -2.4910 1.4703 43 1 5.9766 -2.4919 -0.3094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174787730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:41 Heat of formation + Delta-G solvation = -76.918688 kcal Electronic energy + Delta-G solvation = -23000.600558 eV Core-core repulsion = 19786.864582 eV Total energy + Delta-G solvation = -3213.735975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.47581 -36.66575 -35.84469 -35.48908 -32.94846 -31.39633 -30.25575 -29.28771 -28.83933 -25.62707 -24.05421 -23.12252 -21.62042 -20.69914 -18.96621 -18.40847 -16.87090 -16.39556 -15.86187 -15.60600 -15.21636 -14.75632 -14.42172 -14.30191 -14.06216 -13.76864 -13.72959 -13.19566 -13.08262 -12.74341 -12.58311 -12.10014 -11.91741 -11.65319 -11.58820 -11.54574 -11.45383 -11.23855 -11.19774 -11.03212 -10.85363 -10.70211 -10.59808 -10.47461 -10.31255 -9.93652 -9.60582 -9.30592 -9.00228 -8.24195 -7.69192 -5.90965 -3.92911 0.26122 3.03717 3.34365 3.41529 3.44501 3.91397 4.03849 4.29487 4.48636 4.54015 4.68906 4.81372 4.84982 4.93680 5.00049 5.16973 5.23166 5.33987 5.34588 5.44683 5.50594 5.64204 5.67627 5.76312 5.84771 5.89675 5.95971 5.97745 5.99943 6.15223 6.24208 6.36381 6.48485 6.57414 7.05210 7.52292 7.55062 7.84754 8.03055 8.26618 8.52395 9.15759 9.69458 11.20465 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.005421 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.328659 B = 5163.890741 C = 5682.775786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.539 5.539 3 C 0.065 3.935 4 C 0.024 3.976 5 C -0.520 4.520 6 H 0.051 0.949 7 C 0.058 3.942 8 N -0.890 5.890 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.101 3.899 14 H 0.089 0.911 15 C -0.145 4.145 16 C -0.116 4.116 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.565 4.565 20 H 0.140 0.860 21 S 2.427 3.573 22 C -0.672 4.672 23 O -0.890 6.890 24 O -0.950 6.950 25 H 0.057 0.943 26 H 0.024 0.976 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.015 0.985 31 H 0.038 0.962 32 H 0.259 0.741 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.315 -12.630 -13.560 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.261 5.261 3 C -0.061 4.061 4 C -0.013 4.013 5 C -0.559 4.559 6 H 0.070 0.930 7 C -0.143 4.143 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.010 4.010 14 H 0.107 0.893 15 C -0.185 4.185 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.673 4.673 20 H 0.158 0.842 21 S 2.607 3.393 22 C -0.820 4.820 23 O -0.887 6.887 24 O -0.947 6.947 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.830 -13.138 -12.279 18.904 hybrid contribution 0.776 1.852 -1.242 2.361 sum 6.606 -11.285 -13.521 18.810 Atomic orbital electron populations 1.22372 0.87167 1.00679 1.01875 1.62420 1.08413 1.17117 1.38194 1.22367 0.98154 0.84913 1.00663 1.19132 0.96856 0.93844 0.91455 1.21223 1.34975 0.97904 1.01759 0.93026 1.24981 0.95445 0.98228 0.95656 1.69995 1.40839 1.36119 1.05994 0.86603 0.78738 0.85137 0.77855 1.19935 1.21134 1.21031 1.21400 0.89885 0.98903 0.90771 0.89309 1.22159 1.01429 1.00193 0.94690 1.21496 0.95541 1.00396 0.98023 1.21451 0.96731 1.00507 0.96274 1.21429 1.00543 0.98984 0.93620 1.30287 1.05188 1.13798 1.18075 0.84248 1.07995 0.77365 0.76092 0.77870 1.30489 1.29248 1.11368 1.10864 1.93715 1.78081 1.69269 1.47606 1.93527 1.76875 1.37382 1.86930 0.92466 0.95796 0.89875 0.92490 0.95863 0.96636 0.94386 0.93145 0.91357 0.90772 0.92013 0.91910 0.91577 0.91646 0.90832 0.89917 0.85399 0.85705 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 8.94 60.06 0.54 1.00 16 2 N -0.54 -9.80 3.33 -234.88 -0.78 -10.58 16 3 C 0.07 1.36 3.83 -3.82 -0.01 1.35 16 4 C 0.02 0.65 4.89 -27.88 -0.14 0.52 16 5 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 6 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.43 13.29 55.43 0.74 -26.70 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.10 1.43 1.63 -67.71 -0.11 1.32 16 14 H 0.09 1.21 7.97 -51.93 -0.41 0.79 16 15 C -0.14 -1.81 4.46 -26.73 -0.12 -1.92 16 16 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 17 C -0.11 -0.96 5.92 -26.73 -0.16 -1.12 16 18 C -0.11 -0.97 4.96 -26.73 -0.13 -1.10 16 19 C -0.56 -6.90 1.90 -26.73 -0.05 -6.95 16 20 H 0.14 1.65 6.37 -51.93 -0.33 1.32 16 21 S 2.43 33.95 4.77 -107.50 -0.51 33.44 16 22 C -0.67 -6.33 10.19 101.05 1.03 -5.30 16 23 O -0.89 -17.32 16.95 -57.83 -0.98 -18.30 16 24 O -0.95 -15.27 17.88 -57.83 -1.03 -16.30 16 25 H 0.06 0.84 8.00 -51.93 -0.42 0.42 16 26 H 0.02 0.37 6.89 -51.93 -0.36 0.02 16 27 H 0.08 1.59 6.60 -51.93 -0.34 1.25 16 28 H 0.06 1.13 6.09 -51.93 -0.32 0.81 16 29 H 0.02 0.47 6.80 -51.93 -0.35 0.12 16 30 H 0.02 0.43 6.61 -51.93 -0.34 0.09 16 31 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.07 0.86 6.84 -51.93 -0.36 0.51 16 34 H 0.07 1.01 6.55 -51.93 -0.34 0.67 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.47 6.59 -51.93 -0.34 0.13 16 40 H 0.08 0.73 8.04 -51.93 -0.42 0.32 16 41 H 0.13 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.12 0.81 6.89 -51.92 -0.36 0.45 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -35.87 337.59 -9.42 -45.29 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -7.19 Total: -1.69 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 0.27 Total: -27.11 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.05 Total: -37.28 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -2.01 Total: -34.61 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 33.95 SS G_CDS: -0.51 Total: 33.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.87 -9.42 -45.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174787730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.631 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds