Wall clock time and date at job start Tue Mar 31 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99638 * 2 1 4 4 C 1.53005 * 109.47024 * 66.05077 * 3 2 1 5 5 C 1.50695 * 109.47241 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00254 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00223 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99515 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00151 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47386 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47249 * 120.00129 * 9 7 5 12 12 H 1.48502 * 109.47207 * 239.99855 * 9 7 5 13 13 C 1.46895 * 110.99939 * 236.04937 * 2 1 3 14 14 H 1.08998 * 109.47922 * 310.25257 * 13 2 1 15 15 C 1.53007 * 109.47294 * 70.25535 * 13 2 1 16 16 C 1.52997 * 109.47218 * 179.97438 * 15 13 2 17 17 C 1.52998 * 109.47368 * 299.99945 * 16 15 13 18 18 C 1.53005 * 109.47310 * 59.99518 * 17 16 15 19 19 C 1.52997 * 109.47299 * 300.00525 * 18 17 16 20 20 H 1.08989 * 109.47302 * 299.99772 * 19 18 17 21 21 S 1.81401 * 109.46842 * 179.97438 * 19 18 17 22 22 C 1.81395 * 101.92195 * 60.71471 * 21 19 18 23 23 O 1.42101 * 108.57485 * 175.19670 * 21 19 18 24 24 O 1.42097 * 108.58098 * 306.22479 * 21 19 18 25 25 H 1.09006 * 109.46746 * 177.34705 * 1 2 3 26 26 H 1.09002 * 109.47204 * 57.34903 * 1 2 3 27 27 H 1.09002 * 109.47353 * 297.34466 * 1 2 3 28 28 H 1.09004 * 109.46969 * 186.04115 * 3 2 1 29 29 H 1.08999 * 109.47840 * 306.04779 * 3 2 1 30 30 H 1.09005 * 109.46924 * 299.99608 * 4 3 2 31 31 H 1.08994 * 109.47386 * 59.99559 * 4 3 2 32 32 H 0.97001 * 119.99363 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.46640 * 299.99685 * 15 13 2 34 34 H 1.09002 * 109.47154 * 59.99772 * 15 13 2 35 35 H 1.09003 * 109.47045 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47120 * 59.99903 * 16 15 13 37 37 H 1.09002 * 109.46966 * 300.00052 * 17 16 15 38 38 H 1.08995 * 109.47528 * 180.02562 * 17 16 15 39 39 H 1.08994 * 109.47303 * 179.97438 * 18 17 16 40 40 H 1.09002 * 109.46670 * 60.00353 * 18 17 16 41 41 H 1.09001 * 109.47584 * 59.99381 * 22 21 19 42 42 H 1.08994 * 109.47383 * 180.02562 * 22 21 19 43 43 H 1.09004 * 109.47136 * 299.99747 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0574 1.3184 5 6 2.1718 3.4641 1.3187 6 1 2.7205 3.8320 0.4643 7 6 1.9660 4.2815 2.4098 8 7 1.2975 3.8337 3.4500 9 14 2.6366 6.0250 2.4104 10 1 3.3453 6.2833 1.1313 11 1 1.5147 6.9868 2.5571 12 1 3.5823 6.1912 3.5433 13 6 1.9954 -0.7659 -1.1376 14 1 1.5058 -1.7389 -1.1785 15 6 1.7232 -0.0031 -2.4357 16 6 2.2721 -0.8005 -3.6205 17 6 3.7800 -0.9948 -3.4498 18 6 4.0523 -1.7575 -2.1517 19 6 3.5035 -0.9601 -0.9669 20 1 3.9927 0.0129 -0.9260 21 16 3.8257 -1.8648 0.5720 22 6 5.6371 -1.9592 0.5790 23 8 3.4102 -1.0591 1.6663 24 8 3.3043 -3.1802 0.4416 25 1 -0.3633 -1.0266 -0.0476 26 1 -0.3634 0.5545 -0.8653 27 1 -0.3634 0.4720 0.9128 28 1 3.0796 1.3444 -0.1082 29 1 1.5610 1.9274 -0.8308 30 1 0.5470 2.0844 1.4266 31 1 2.0657 1.5015 2.1492 32 1 1.1530 4.4086 4.2178 33 1 0.6490 0.1356 -2.5571 34 1 2.2129 0.9699 -2.3950 35 1 2.0777 -0.2573 -4.5453 36 1 1.7827 -1.7736 -3.6615 37 1 4.2694 -0.0217 -3.4089 38 1 4.1711 -1.5625 -4.2941 39 1 5.1265 -1.8964 -2.0303 40 1 3.5629 -2.7307 -2.1926 41 1 6.0535 -0.9519 0.5798 42 1 5.9699 -2.4910 1.4703 43 1 5.9766 -2.4919 -0.3094 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174787730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:40 Heat of formation + Delta-G solvation = -103.614735 kcal Electronic energy + Delta-G solvation = -23001.758185 eV Core-core repulsion = 19786.864582 eV Total energy + Delta-G solvation = -3214.893603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.59679 -37.85900 -37.04919 -36.73093 -35.04436 -32.27230 -31.93050 -30.31128 -29.98240 -27.39652 -25.61619 -23.99308 -23.22351 -21.76244 -20.23639 -19.54417 -18.59145 -17.77779 -17.05768 -16.80872 -16.54001 -16.30195 -15.86212 -15.60111 -15.25440 -14.88868 -14.59027 -14.29115 -14.11693 -13.90098 -13.87623 -13.55879 -13.33717 -13.07660 -12.86651 -12.83946 -12.76514 -12.64935 -12.54747 -12.42056 -12.17239 -12.07376 -11.73760 -11.62663 -11.44414 -11.43679 -11.13722 -11.08778 -10.79457 -10.49776 -9.09076 -8.15540 -6.27123 -0.76616 1.39752 1.41219 1.53900 2.04382 2.41754 2.89009 2.93990 3.17607 3.28936 3.53856 3.76410 3.93544 4.11441 4.12772 4.16111 4.23520 4.37259 4.37678 4.43175 4.46490 4.49949 4.64678 4.73579 4.78504 4.90709 4.96425 5.02090 5.04297 5.14738 5.20233 5.22638 5.27296 5.30911 5.51655 5.51878 5.76547 5.84730 6.13944 6.24880 6.36670 6.92501 7.41387 8.97390 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.005421 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.328659 B = 5163.890741 C = 5682.775786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.558 5.558 3 C 0.086 3.914 4 C 0.032 3.968 5 C -0.539 4.539 6 H 0.064 0.936 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.095 3.905 14 H 0.094 0.906 15 C -0.141 4.141 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.554 4.554 20 H 0.144 0.856 21 S 2.407 3.593 22 C -0.649 4.649 23 O -0.965 6.965 24 O -0.983 6.983 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.029 0.971 30 H -0.012 1.012 31 H -0.008 1.008 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.145 0.855 42 H 0.134 0.866 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.879 -12.646 -16.595 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.281 5.281 3 C -0.041 4.041 4 C -0.005 4.005 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.201 4.201 8 N -0.575 5.575 9 Si 0.792 3.208 10 H -0.181 1.181 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.015 4.015 14 H 0.112 0.888 15 C -0.181 4.181 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.147 4.147 19 C -0.665 4.665 20 H 0.162 0.838 21 S 2.594 3.406 22 C -0.800 4.800 23 O -0.962 6.962 24 O -0.980 6.980 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.006 0.994 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.352 -13.178 -15.316 21.863 hybrid contribution -0.003 1.769 -0.319 1.798 sum 8.349 -11.409 -15.634 21.078 Atomic orbital electron populations 1.22330 0.87073 1.01911 1.00699 1.62263 1.08818 1.15710 1.41345 1.21945 0.98780 0.86235 0.97148 1.18938 0.94618 0.93716 0.93231 1.21674 1.35003 0.98768 1.02277 0.91827 1.26027 0.95586 1.03395 0.95083 1.70165 1.42295 1.38160 1.06889 0.85373 0.78143 0.78755 0.78573 1.18097 1.20496 1.20509 1.21554 0.91316 0.98506 0.90092 0.88814 1.22106 1.01239 0.99765 0.94952 1.21512 0.96589 1.00301 0.96844 1.21488 0.95672 1.00940 0.96755 1.21613 1.02668 0.98434 0.92036 1.30180 1.03924 1.14188 1.18178 0.83793 1.08034 0.79797 0.75035 0.77692 1.30230 1.22951 1.13401 1.13456 1.93650 1.81019 1.70458 1.51060 1.93477 1.79006 1.38235 1.87285 0.90245 0.94438 0.93304 0.91506 0.95291 0.99381 0.98984 0.92960 0.91909 0.91989 0.90881 0.91194 0.91505 0.89055 0.87236 0.89557 0.83680 0.84735 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 8.94 127.69 1.14 2.14 16 2 N -0.56 -21.09 3.33 -897.02 -2.99 -24.08 16 3 C 0.09 3.70 3.83 86.31 0.33 4.03 16 4 C 0.03 1.84 4.89 29.85 0.15 1.99 16 5 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 6 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.93 -59.88 13.29 21.45 0.28 -59.59 16 9 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.09 2.62 1.63 44.92 0.07 2.70 16 14 H 0.09 2.50 7.97 -2.39 -0.02 2.48 16 15 C -0.14 -3.29 4.46 30.60 0.14 -3.16 16 16 C -0.11 -1.86 5.92 30.59 0.18 -1.68 16 17 C -0.11 -1.43 5.92 30.59 0.18 -1.25 16 18 C -0.11 -1.53 4.96 30.59 0.15 -1.38 16 19 C -0.55 -12.59 1.90 30.60 0.06 -12.53 16 20 H 0.14 3.14 6.37 -2.40 -0.02 3.12 16 21 S 2.41 66.74 4.77 -56.49 -0.27 66.47 16 22 C -0.65 -10.07 10.19 113.37 1.16 -8.92 16 23 O -0.96 -39.89 16.95 -127.37 -2.16 -42.05 16 24 O -0.98 -31.62 17.88 -127.37 -2.28 -33.89 16 25 H 0.08 2.42 8.00 -2.38 -0.02 2.40 16 26 H 0.04 1.21 6.89 -2.39 -0.02 1.19 16 27 H 0.05 2.05 6.60 -2.39 -0.02 2.03 16 28 H 0.07 2.69 6.09 -2.38 -0.01 2.68 16 29 H 0.03 1.20 6.80 -2.39 -0.02 1.18 16 30 H -0.01 -0.74 6.61 -2.38 -0.02 -0.76 16 31 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 33 H 0.06 1.52 6.84 -2.39 -0.02 1.50 16 34 H 0.06 1.60 6.55 -2.39 -0.02 1.59 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.11 0.78 6.59 -2.39 -0.02 0.76 16 40 H 0.09 1.21 8.04 -2.39 -0.02 1.19 16 41 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.16 1.26 6.89 -2.39 -0.02 1.24 16 Total: -1.00 -83.62 337.59 -0.15 -83.77 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.98 Total: 11.31 kcal Atomic # 6 Polarization: -53.50 SS G_CDS: 4.25 Total: -49.25 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.70 Total: -83.67 kcal Atomic # 8 Polarization: -71.51 SS G_CDS: -4.44 Total: -75.95 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 66.74 SS G_CDS: -0.27 Total: 66.47 kcal Total: -83.62 -0.15 -83.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174787730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.846 kcal (2) G-P(sol) polarization free energy of solvation -83.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds