Wall clock time and date at job start Tue Mar 31 2020 07:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00279 * 2 1 4 4 C 1.52995 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46975 * 175.00077 * 4 3 2 6 6 N 1.46498 * 109.46927 * 294.99214 * 4 3 2 7 7 C 1.34780 * 120.00361 * 205.00017 * 6 4 3 8 8 O 1.21545 * 119.99517 * 0.02562 * 7 6 4 9 9 C 1.47880 * 120.00191 * 180.02562 * 7 6 4 10 10 C 1.39924 * 120.02626 * 359.72559 * 9 7 6 11 11 C 1.38335 * 120.35956 * 179.78537 * 10 9 7 12 12 C 1.37755 * 120.40796 * 0.47115 * 11 10 9 13 13 C 1.40746 * 120.04206 * 359.78076 * 12 11 10 14 14 C 1.41436 * 120.17723 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00239 * 334.93233 * 14 13 12 16 16 C 1.39939 * 119.99750 * 154.93515 * 14 13 12 17 17 N 1.30825 * 120.00022 * 342.58399 * 16 14 13 18 18 Si 1.86802 * 119.99820 * 162.58866 * 16 14 13 19 19 H 1.48500 * 109.47213 * 89.99684 * 18 16 14 20 20 H 1.48499 * 109.47167 * 209.99664 * 18 16 14 21 21 H 1.48499 * 109.47217 * 329.99659 * 18 16 14 22 22 C 1.38996 * 120.02575 * 179.97438 * 9 7 6 23 23 C 1.52993 * 109.47576 * 54.99459 * 4 3 2 24 24 C 1.53002 * 117.50201 * 248.74805 * 23 4 3 25 25 C 1.53002 * 117.50142 * 180.08655 * 23 4 3 26 26 H 1.08995 * 109.47782 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47303 * 300.00910 * 1 2 3 28 28 H 1.09006 * 109.46667 * 59.99863 * 1 2 3 29 29 H 1.09006 * 109.46471 * 299.99989 * 3 2 1 30 30 H 1.09004 * 109.47181 * 59.99461 * 3 2 1 31 31 H 0.97000 * 119.99873 * 25.00601 * 6 4 3 32 32 H 1.08001 * 119.82044 * 0.02562 * 10 9 7 33 33 H 1.07994 * 119.79540 * 180.23567 * 11 10 9 34 34 H 1.07995 * 119.97583 * 179.76689 * 12 11 10 35 35 H 0.97005 * 119.99753 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.20146 * 359.95613 * 22 9 7 37 37 H 1.09004 * 115.54584 * 34.41490 * 23 4 3 38 38 H 1.08994 * 117.49427 * 0.02562 * 24 23 4 39 39 H 1.08997 * 117.49711 * 145.01749 * 24 23 4 40 40 H 1.08995 * 117.49579 * 214.97930 * 25 23 4 41 41 H 1.08994 * 117.49650 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0902 6 7 3.9766 0.5640 1.2509 7 6 5.2209 0.7940 1.7153 8 8 5.9767 1.5166 1.0957 9 6 5.6663 0.1671 2.9784 10 6 4.7946 -0.6603 3.6949 11 6 5.2056 -1.2537 4.8750 12 6 6.4740 -1.0295 5.3633 13 6 7.3631 -0.1961 4.6591 14 6 8.6659 0.0364 5.1582 15 1 8.8646 -0.0606 6.2152 16 6 9.6975 0.3924 4.2821 17 7 9.5654 0.1846 2.9972 18 14 11.2632 1.1641 4.9474 19 1 12.2426 0.0959 5.2715 20 1 11.8412 2.0718 3.9241 21 1 10.9504 1.9380 6.1756 22 6 6.9496 0.4034 3.4574 23 6 3.9781 0.3196 -1.1824 24 6 4.5708 -1.0556 -0.8686 25 6 5.4785 0.0761 -1.3569 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8463 -0.8901 30 1 1.6886 1.8465 0.8900 31 1 3.3733 -0.0124 1.7455 32 1 3.7968 -0.8396 3.3227 33 1 4.5266 -1.8937 5.4187 34 1 6.7863 -1.4934 6.2872 35 1 10.2804 0.4317 2.3900 36 1 7.6246 1.0440 2.9093 37 1 3.3751 0.4136 -2.0856 38 1 4.6449 -1.3442 0.1798 39 1 4.3580 -1.8662 -1.5655 40 1 5.8625 0.0095 -2.3748 41 1 6.1503 0.5325 -0.6299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178818039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:32 Heat of formation + Delta-G solvation = -37.131344 kcal Electronic energy + Delta-G solvation = -23066.127901 eV Core-core repulsion = 19718.673283 eV Total energy + Delta-G solvation = -3347.454618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87386 -38.07795 -37.15000 -36.22072 -33.83474 -33.39480 -30.65389 -29.45909 -29.16071 -26.47561 -25.27547 -23.60798 -22.55802 -21.89432 -20.94788 -19.85340 -19.38612 -17.73658 -16.76601 -16.26588 -16.10132 -15.72127 -15.21950 -15.07121 -14.71770 -14.32538 -14.09581 -13.55463 -13.19826 -12.84416 -12.60880 -12.52312 -12.44774 -12.02832 -11.66940 -11.59642 -11.34269 -11.17098 -11.07894 -10.95863 -10.72993 -10.47438 -10.06170 -9.95531 -9.77228 -9.67974 -9.63284 -9.19229 -8.97276 -8.52443 -7.60757 -7.49476 -6.77975 -4.39498 2.22610 2.83143 3.09034 3.11850 3.17724 3.54808 3.76413 3.88476 3.93864 4.21570 4.65155 4.78002 4.96239 5.12642 5.19606 5.27844 5.34145 5.39023 5.49337 5.55075 5.62497 5.67860 5.74324 6.00352 6.09756 6.12594 6.24870 6.31423 6.54469 6.73597 6.78573 6.91794 7.00178 7.02581 7.07045 7.23340 7.40501 7.72768 7.79055 7.94956 8.14189 8.22405 8.52516 8.82333 8.85451 8.98961 10.16730 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.004322 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.271942 B = 6477.505664 C = 7246.263884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.057 3.943 4 C 0.179 3.821 5 H 0.101 0.899 6 N -0.726 5.726 7 C 0.566 3.434 8 O -0.543 6.543 9 C -0.128 4.128 10 C -0.217 4.217 11 C -0.098 4.098 12 C -0.212 4.212 13 C 0.099 3.901 14 C -0.461 4.461 15 H 0.080 0.920 16 C 0.074 3.926 17 N -0.783 5.783 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.091 4.091 23 C -0.162 4.162 24 C -0.165 4.165 25 C -0.189 4.189 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.404 0.596 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.284 0.716 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.995 0.888 -6.326 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.020 4.020 4 C 0.074 3.926 5 H 0.119 0.881 6 N -0.380 5.380 7 C 0.357 3.643 8 O -0.422 6.422 9 C -0.132 4.132 10 C -0.237 4.237 11 C -0.116 4.116 12 C -0.232 4.232 13 C 0.096 3.904 14 C -0.490 4.490 15 H 0.098 0.902 16 C -0.145 4.145 17 N -0.407 5.407 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.111 4.111 23 C -0.181 4.181 24 C -0.202 4.202 25 C -0.225 4.225 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.240 0.760 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.151 0.849 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.212 1.270 -7.008 14.138 hybrid contribution 0.086 0.108 0.317 0.346 sum -12.126 1.378 -6.691 13.918 Atomic orbital electron populations 1.22734 0.81430 1.02684 0.99736 1.87976 1.19194 1.27318 1.95328 1.22848 0.93088 0.85283 1.00819 1.20448 0.90969 0.97455 0.83728 0.88125 1.45972 1.15724 1.51969 1.24298 1.18835 0.80497 0.79761 0.85228 1.90626 1.53690 1.38416 1.59435 1.19471 0.96504 1.02443 0.94744 1.20368 0.98089 1.06401 0.98804 1.20435 0.95900 0.99390 0.95918 1.21102 0.95385 1.04104 1.02575 1.17591 0.92833 0.88835 0.91093 1.19571 0.92799 1.41280 0.95375 0.90158 1.25947 1.00714 0.93374 0.94477 1.69790 1.33597 1.33685 1.03664 0.86304 0.80761 0.79746 0.79915 1.19471 1.19964 1.18418 1.21629 0.92787 0.99426 0.97299 1.22507 0.96714 0.99775 0.99105 1.22826 1.03945 0.91052 1.02362 1.23410 0.93236 1.03151 1.02739 0.89695 0.94174 0.94328 0.92123 0.92538 0.76019 0.89197 0.88962 0.88677 0.90475 0.84860 0.88099 0.88467 0.89878 0.89934 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.43 9.92 -35.23 -0.35 -4.78 16 3 C 0.06 0.63 5.66 37.15 0.21 0.84 16 4 C 0.18 2.57 2.84 -67.94 -0.19 2.37 16 5 H 0.10 1.53 7.58 -51.93 -0.39 1.14 16 6 N -0.73 -12.13 3.55 -54.75 -0.19 -12.32 16 7 C 0.57 12.07 6.61 -12.31 -0.08 11.98 16 8 O -0.54 -12.96 13.36 5.33 0.07 -12.89 16 9 C -0.13 -3.01 5.87 -105.04 -0.62 -3.63 16 10 C -0.22 -4.59 9.55 -38.91 -0.37 -4.96 16 11 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 12 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 13 C 0.10 2.62 5.57 -106.87 -0.59 2.02 16 14 C -0.46 -12.15 9.05 -37.73 -0.34 -12.49 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 16 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 17 N -0.78 -20.72 10.97 55.55 0.61 -20.11 16 18 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.09 -2.42 8.23 -38.44 -0.32 -2.74 16 23 C -0.16 -2.33 5.23 -90.62 -0.47 -2.81 16 24 C -0.16 -2.61 9.74 -26.69 -0.26 -2.87 16 25 C -0.19 -3.16 9.82 -26.69 -0.26 -3.42 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.40 6.30 6.40 -40.82 -0.26 6.04 16 32 H 0.09 1.61 6.38 -52.49 -0.33 1.28 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 36 H 0.13 3.82 5.76 -52.49 -0.30 3.52 16 37 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 38 H 0.10 1.74 6.67 -51.93 -0.35 1.39 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.12 2.50 5.01 -51.93 -0.26 2.24 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -29.02 338.05 -8.53 -37.55 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -5.67 Total: 14.17 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.05 Total: -20.49 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.42 Total: -32.44 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.28 Total: -17.67 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.02 -8.53 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178818039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.418 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds