Wall clock time and date at job start Tue Mar 31 2020 07:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00279 * 2 1 4 4 C 1.52995 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46975 * 175.00077 * 4 3 2 6 6 N 1.46498 * 109.46927 * 294.99214 * 4 3 2 7 7 C 1.34780 * 120.00361 * 205.00017 * 6 4 3 8 8 O 1.21545 * 119.99517 * 0.02562 * 7 6 4 9 9 C 1.47880 * 120.00191 * 180.02562 * 7 6 4 10 10 C 1.39924 * 120.02626 * 359.72559 * 9 7 6 11 11 C 1.38335 * 120.35956 * 179.78537 * 10 9 7 12 12 C 1.37755 * 120.40796 * 0.47115 * 11 10 9 13 13 C 1.40746 * 120.04206 * 359.78076 * 12 11 10 14 14 C 1.41436 * 120.17723 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00239 * 334.93233 * 14 13 12 16 16 C 1.39939 * 119.99750 * 154.93515 * 14 13 12 17 17 N 1.30825 * 120.00022 * 342.58399 * 16 14 13 18 18 Si 1.86802 * 119.99820 * 162.58866 * 16 14 13 19 19 H 1.48500 * 109.47213 * 89.99684 * 18 16 14 20 20 H 1.48499 * 109.47167 * 209.99664 * 18 16 14 21 21 H 1.48499 * 109.47217 * 329.99659 * 18 16 14 22 22 C 1.38996 * 120.02575 * 179.97438 * 9 7 6 23 23 C 1.52993 * 109.47576 * 54.99459 * 4 3 2 24 24 C 1.53002 * 117.50201 * 248.74805 * 23 4 3 25 25 C 1.53002 * 117.50142 * 180.08655 * 23 4 3 26 26 H 1.08995 * 109.47782 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47303 * 300.00910 * 1 2 3 28 28 H 1.09006 * 109.46667 * 59.99863 * 1 2 3 29 29 H 1.09006 * 109.46471 * 299.99989 * 3 2 1 30 30 H 1.09004 * 109.47181 * 59.99461 * 3 2 1 31 31 H 0.97000 * 119.99873 * 25.00601 * 6 4 3 32 32 H 1.08001 * 119.82044 * 0.02562 * 10 9 7 33 33 H 1.07994 * 119.79540 * 180.23567 * 11 10 9 34 34 H 1.07995 * 119.97583 * 179.76689 * 12 11 10 35 35 H 0.97005 * 119.99753 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.20146 * 359.95613 * 22 9 7 37 37 H 1.09004 * 115.54584 * 34.41490 * 23 4 3 38 38 H 1.08994 * 117.49427 * 0.02562 * 24 23 4 39 39 H 1.08997 * 117.49711 * 145.01749 * 24 23 4 40 40 H 1.08995 * 117.49579 * 214.97930 * 25 23 4 41 41 H 1.08994 * 117.49650 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 -0.0902 6 7 3.9766 0.5640 1.2509 7 6 5.2209 0.7940 1.7153 8 8 5.9767 1.5166 1.0957 9 6 5.6663 0.1671 2.9784 10 6 4.7946 -0.6603 3.6949 11 6 5.2056 -1.2537 4.8750 12 6 6.4740 -1.0295 5.3633 13 6 7.3631 -0.1961 4.6591 14 6 8.6659 0.0364 5.1582 15 1 8.8646 -0.0606 6.2152 16 6 9.6975 0.3924 4.2821 17 7 9.5654 0.1846 2.9972 18 14 11.2632 1.1641 4.9474 19 1 12.2426 0.0959 5.2715 20 1 11.8412 2.0718 3.9241 21 1 10.9504 1.9380 6.1756 22 6 6.9496 0.4034 3.4574 23 6 3.9781 0.3196 -1.1824 24 6 4.5708 -1.0556 -0.8686 25 6 5.4785 0.0761 -1.3569 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8463 -0.8901 30 1 1.6886 1.8465 0.8900 31 1 3.3733 -0.0124 1.7455 32 1 3.7968 -0.8396 3.3227 33 1 4.5266 -1.8937 5.4187 34 1 6.7863 -1.4934 6.2872 35 1 10.2804 0.4317 2.3900 36 1 7.6246 1.0440 2.9093 37 1 3.3751 0.4136 -2.0856 38 1 4.6449 -1.3442 0.1798 39 1 4.3580 -1.8662 -1.5655 40 1 5.8625 0.0095 -2.3748 41 1 6.1503 0.5325 -0.6299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178818039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:31 Heat of formation + Delta-G solvation = -54.037432 kcal Electronic energy + Delta-G solvation = -23066.861004 eV Core-core repulsion = 19718.673283 eV Total energy + Delta-G solvation = -3348.187721 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35831 -39.41400 -38.57677 -37.58029 -35.64851 -34.88583 -32.27640 -31.28779 -30.52798 -27.32163 -27.05419 -24.79745 -24.08591 -23.20420 -22.79469 -21.37323 -20.82304 -19.51350 -17.96884 -17.70519 -17.41136 -16.88448 -16.73570 -16.43253 -16.23630 -15.69720 -15.30849 -15.09144 -15.01733 -14.45276 -14.27804 -14.06523 -13.44692 -13.36327 -13.02988 -12.94926 -12.78036 -12.71018 -12.54018 -12.40542 -12.19373 -12.06439 -11.87183 -11.50569 -11.23038 -11.05845 -10.86990 -10.69785 -10.54001 -10.00010 -9.46129 -9.37630 -8.65707 -6.37736 0.39991 1.01544 1.36411 1.46391 1.52612 2.10977 2.19471 2.24528 2.79530 2.88806 2.96943 3.66101 3.71540 3.93811 4.05510 4.13692 4.23837 4.39833 4.41150 4.50473 4.57920 4.61110 4.64396 4.68532 4.73973 4.83191 4.92306 4.97115 5.04389 5.09517 5.19825 5.25985 5.32051 5.40586 5.52556 5.58580 5.87525 5.93774 6.05815 6.27025 6.29652 6.53223 6.71750 6.88656 6.95243 7.37062 8.30907 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.004322 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.271942 B = 6477.505664 C = 7246.263884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.066 3.934 4 C 0.170 3.830 5 H 0.090 0.910 6 N -0.704 5.704 7 C 0.564 3.436 8 O -0.576 6.576 9 C -0.138 4.138 10 C -0.199 4.199 11 C -0.096 4.096 12 C -0.219 4.219 13 C 0.068 3.932 14 C -0.499 4.499 15 H 0.083 0.917 16 C 0.031 3.969 17 N -0.824 5.824 18 Si 0.982 3.018 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.255 1.255 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.166 4.166 25 C -0.212 4.212 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.412 0.588 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.286 0.714 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.894 0.324 -6.579 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.011 4.011 4 C 0.066 3.934 5 H 0.107 0.893 6 N -0.357 5.357 7 C 0.354 3.646 8 O -0.457 6.457 9 C -0.141 4.141 10 C -0.218 4.218 11 C -0.114 4.114 12 C -0.238 4.238 13 C 0.066 3.934 14 C -0.529 4.529 15 H 0.101 0.899 16 C -0.184 4.184 17 N -0.450 5.450 18 Si 0.802 3.198 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.178 1.178 22 C -0.149 4.149 23 C -0.157 4.157 24 C -0.203 4.203 25 C -0.249 4.249 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.249 0.751 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.149 0.851 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.171 0.685 -7.257 16.832 hybrid contribution 0.769 0.205 0.360 0.873 sum -14.403 0.890 -6.897 15.994 Atomic orbital electron populations 1.22908 0.79561 1.03650 1.00870 1.87931 1.21177 1.27391 1.95585 1.22750 0.90011 0.85670 1.02682 1.20714 0.93767 0.96589 0.82325 0.89262 1.45777 1.13880 1.51109 1.24904 1.18625 0.81727 0.79598 0.84663 1.90620 1.55019 1.39966 1.60132 1.19811 0.95944 1.02586 0.95803 1.20828 0.99149 1.03918 0.97950 1.20905 0.95504 0.99080 0.95897 1.21400 0.96168 1.03461 1.02812 1.17936 0.93809 0.89891 0.91754 1.19856 0.93677 1.43557 0.95764 0.89869 1.26835 1.03973 0.93182 0.94436 1.69894 1.34815 1.35233 1.05040 0.85213 0.76513 0.78925 0.79154 1.18213 1.19712 1.17847 1.21433 0.94084 1.01082 0.98347 1.22624 0.94924 0.98185 0.99963 1.22803 1.03910 0.92104 1.01459 1.23294 0.94402 1.04610 1.02546 0.88910 0.93377 0.92848 0.89335 0.91622 0.75064 0.85125 0.84556 0.87429 0.90360 0.88259 0.85085 0.90783 0.87785 0.88315 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -7.83 9.92 -148.98 -1.48 -9.31 16 3 C 0.07 1.22 5.66 71.98 0.41 1.62 16 4 C 0.17 4.58 2.84 44.99 0.13 4.71 16 5 H 0.09 2.67 7.58 -2.39 -0.02 2.65 16 6 N -0.70 -22.77 3.55 -445.39 -1.58 -24.35 16 7 C 0.56 24.62 6.61 86.80 0.57 25.19 16 8 O -0.58 -29.08 13.36 -3.86 -0.05 -29.13 16 9 C -0.14 -6.62 5.87 -20.13 -0.12 -6.74 16 10 C -0.20 -8.04 9.55 22.70 0.22 -7.82 16 11 C -0.10 -3.90 10.01 22.18 0.22 -3.67 16 12 C -0.22 -10.41 9.78 22.77 0.22 -10.18 16 13 C 0.07 3.77 5.57 -21.32 -0.12 3.65 16 14 C -0.50 -27.55 9.05 23.47 0.21 -27.34 16 15 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 16 C 0.03 1.62 5.14 85.25 0.44 2.06 16 17 N -0.82 -46.50 10.97 21.82 0.24 -46.26 16 18 Si 0.98 40.06 29.59 68.60 2.03 42.09 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 22 C -0.13 -7.23 8.23 23.01 0.19 -7.04 16 23 C -0.14 -3.71 5.23 -10.79 -0.06 -3.77 16 24 C -0.17 -5.06 9.74 30.62 0.30 -4.76 16 25 C -0.21 -7.12 9.82 30.62 0.30 -6.82 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.41 11.83 6.40 -92.71 -0.59 11.24 16 32 H 0.13 4.17 6.38 -2.91 -0.02 4.15 16 33 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.29 14.89 8.30 -92.70 -0.77 14.12 16 36 H 0.10 6.19 5.76 -2.91 -0.02 6.17 16 37 H 0.13 2.79 8.11 -2.38 -0.02 2.78 16 38 H 0.07 2.61 6.67 -2.39 -0.02 2.59 16 39 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.08 3.47 5.01 -2.39 -0.01 3.45 16 Total: -1.00 -68.40 338.05 3.78 -64.63 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: 0.45 Total: 41.66 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 4.16 Total: -39.33 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.34 Total: -70.61 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.53 Total: -38.43 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -68.40 3.78 -64.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178818039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.588 kcal (2) G-P(sol) polarization free energy of solvation -68.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds