Wall clock time and date at job start Tue Mar 31 2020 06:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46891 * 111.00094 * 2 1 4 4 C 1.52995 * 109.47594 * 66.04502 * 3 2 1 5 5 C 1.52999 * 109.47856 * 179.97438 * 4 3 2 6 6 S 1.80997 * 109.47591 * 180.02562 * 5 4 3 7 7 C 1.76200 * 99.99852 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00086 * 359.97438 * 7 6 5 9 9 C 1.38806 * 119.99644 * 179.97438 * 7 6 5 10 10 N 1.31627 * 120.00187 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99700 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47088 * 60.00285 * 11 9 7 13 13 H 1.48497 * 109.46725 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47026 * 300.00033 * 11 9 7 15 15 C 1.46898 * 110.99519 * 236.04392 * 2 1 3 16 16 C 1.53008 * 109.54165 * 183.95649 * 15 2 1 17 17 O 1.42895 * 109.47035 * 54.49441 * 16 15 2 18 18 C 1.53178 * 109.54459 * 63.78203 * 15 2 1 19 19 C 1.53108 * 109.15621 * 183.23970 * 18 15 2 20 20 O 1.42901 * 109.48730 * 57.47305 * 19 18 15 21 21 C 1.42908 * 114.09802 * 298.88599 * 20 19 18 22 22 C 1.53096 * 109.41397 * 61.15751 * 21 20 19 23 23 H 1.09002 * 109.47362 * 59.99831 * 1 2 3 24 24 H 1.08996 * 109.47672 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47045 * 300.00094 * 1 2 3 26 26 H 1.09010 * 109.47341 * 306.04603 * 3 2 1 27 27 H 1.09004 * 109.47223 * 186.05025 * 3 2 1 28 28 H 1.09000 * 109.47153 * 59.99974 * 4 3 2 29 29 H 1.09004 * 109.47262 * 300.00499 * 4 3 2 30 30 H 1.09004 * 109.47230 * 300.00687 * 5 4 3 31 31 H 1.09000 * 109.46623 * 59.99818 * 5 4 3 32 32 H 0.96995 * 120.00382 * 180.02562 * 10 9 7 33 33 H 1.08990 * 109.47275 * 174.49834 * 16 15 2 34 34 H 1.09001 * 109.46884 * 294.49819 * 16 15 2 35 35 H 0.96700 * 113.99980 * 179.97438 * 17 16 15 36 36 H 1.09004 * 109.51741 * 303.05164 * 18 15 2 37 37 H 1.09000 * 109.52514 * 63.24122 * 18 15 2 38 38 H 1.09000 * 109.40587 * 297.49063 * 19 18 15 39 39 H 1.09001 * 109.49021 * 177.50866 * 19 18 15 40 40 H 1.09001 * 109.48110 * 301.18245 * 21 20 19 41 41 H 1.08996 * 109.48755 * 181.15261 * 21 20 19 42 42 H 1.08996 * 109.51903 * 182.48273 * 22 21 20 43 43 H 1.09002 * 109.56913 * 62.33016 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1803 3.4856 1.3185 6 16 1.7504 4.2970 2.8783 7 6 2.4831 5.8773 2.6131 8 1 3.0022 6.0837 1.6888 9 6 2.3931 6.8570 3.5923 10 7 1.7609 6.6053 4.7191 11 14 3.1705 8.5322 3.3116 12 1 2.5628 9.1654 2.1136 13 1 2.9359 9.3920 4.4993 14 1 4.6313 8.3706 3.0988 15 6 1.9953 -0.7660 -1.1376 16 6 3.5217 -0.8276 -1.0508 17 8 3.9058 -1.3476 0.2235 18 6 1.5835 -0.0867 -2.4473 19 6 2.0668 -0.9349 -3.6268 20 8 1.5225 -2.2520 -3.5215 21 6 1.9141 -2.9524 -2.3389 22 6 1.4228 -2.1865 -1.1077 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.5611 1.9273 -0.8310 27 1 3.0797 1.3443 -0.1083 28 1 2.0658 1.5016 2.1491 29 1 0.5472 2.0845 1.4265 30 1 3.2647 3.4582 1.2104 31 1 1.7464 4.0417 0.4875 32 1 1.6977 7.2900 5.4032 33 1 3.9045 -1.4764 -1.8384 34 1 3.9332 0.1743 -1.1734 35 1 4.8622 -1.4151 0.3487 36 1 0.4978 0.0029 -2.4854 37 1 2.0339 0.9044 -2.5009 38 1 3.1554 -0.9892 -3.6119 39 1 1.7383 -0.4794 -4.5610 40 1 3.0006 -3.0329 -2.3071 41 1 1.4756 -3.9502 -2.3453 42 1 1.7583 -2.6956 -0.2043 43 1 0.3338 -2.1405 -1.1168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191029360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:51 Heat of formation + Delta-G solvation = -95.320934 kcal Electronic energy + Delta-G solvation = -21809.242058 eV Core-core repulsion = 18594.708101 eV Total energy + Delta-G solvation = -3214.533957 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75581 -37.66564 -36.27457 -33.71924 -32.41273 -31.52514 -31.26148 -27.96184 -26.22662 -25.47888 -24.65534 -23.88295 -22.79229 -20.72161 -18.61249 -17.58600 -17.44390 -16.83160 -16.37370 -15.72690 -15.66802 -14.96586 -14.91131 -14.78847 -14.29676 -13.94513 -13.71775 -13.50251 -13.32497 -12.87059 -12.75802 -12.50349 -12.02423 -11.85715 -11.76984 -11.49234 -11.21479 -11.12897 -11.09882 -11.02832 -10.82252 -10.60506 -10.34300 -10.26976 -9.98391 -9.77012 -9.48895 -9.03432 -8.27205 -8.17895 -6.49827 -6.20647 -3.90604 3.22164 3.23802 3.28486 3.51557 3.57852 3.80342 4.06032 4.24717 4.41563 4.48412 4.67957 4.82128 4.89764 4.93128 5.02760 5.14809 5.15352 5.22984 5.25821 5.36203 5.37155 5.43107 5.47190 5.52243 5.60853 5.68460 5.72035 5.82198 5.84146 5.92474 6.01595 6.07119 6.16132 6.39364 6.64790 6.80940 6.87911 7.09621 7.15348 7.55722 7.61715 8.38105 9.25219 10.87505 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033427 B = 0.002984 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.435138 B = 9382.611111 C = 9483.235115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.514 5.514 3 C 0.058 3.942 4 C -0.092 4.092 5 C -0.111 4.111 6 S -0.131 6.131 7 C -0.517 4.517 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.870 5.870 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.116 3.884 16 C 0.084 3.916 17 O -0.548 6.548 18 C -0.187 4.187 19 C 0.064 3.936 20 O -0.383 6.383 21 C 0.059 3.941 22 C -0.142 4.142 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.268 0.732 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.373 0.627 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 -18.050 -15.487 23.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.236 5.236 3 C -0.071 4.071 4 C -0.130 4.130 5 C -0.261 4.261 6 S 0.097 5.903 7 C -0.666 4.666 8 H 0.089 0.911 9 C -0.138 4.138 10 N -0.505 5.505 11 Si 0.744 3.256 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.026 3.974 16 C 0.005 3.995 17 O -0.352 6.352 18 C -0.227 4.227 19 C -0.014 4.014 20 O -0.302 6.302 21 C -0.018 4.018 22 C -0.180 4.180 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.219 0.781 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.562 -18.686 -14.001 23.356 hybrid contribution 1.673 2.280 -1.836 3.372 sum 2.236 -16.406 -15.837 22.912 Atomic orbital electron populations 1.22573 0.87766 1.01901 1.01194 1.62145 1.07429 1.13830 1.40203 1.22245 0.99975 0.87161 0.97700 1.21252 1.01159 0.93860 0.96767 1.23227 1.02137 0.97638 1.03070 1.84643 1.74342 1.13164 1.18126 1.22657 1.40602 0.97611 1.05680 0.91101 1.25011 0.95241 0.98989 0.94531 1.70011 1.40014 1.34414 1.06097 0.86236 0.79582 0.81953 0.77823 1.19974 1.20807 1.19952 1.21052 0.93426 0.94308 0.88636 1.22305 0.93989 0.97371 0.85794 1.86628 1.27312 1.86874 1.34352 1.22908 1.03330 1.00404 0.96042 1.22552 0.97436 0.83044 0.98340 1.87934 1.73137 1.27423 1.41711 1.22678 0.99118 0.95691 0.84281 1.22269 1.01526 0.94765 0.99435 0.95641 0.91301 0.90518 0.95140 0.90918 0.90698 0.91752 0.92318 0.92533 0.92263 0.93640 0.93512 0.78130 0.89992 0.90309 0.93156 0.88817 0.93040 0.88672 0.89131 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.54 60.06 0.51 0.67 16 2 N -0.51 -6.56 4.34 -226.95 -0.99 -7.55 16 3 C 0.06 0.81 4.07 -3.83 -0.02 0.80 16 4 C -0.09 -1.58 5.14 -26.73 -0.14 -1.71 16 5 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 6 S -0.13 -3.50 21.44 -107.50 -2.30 -5.81 16 7 C -0.52 -15.05 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 10 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 11 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 15 C 0.12 1.22 0.24 -131.42 -0.03 1.19 16 16 C 0.08 0.82 4.85 37.16 0.18 1.00 16 17 O -0.55 -5.92 12.94 -35.23 -0.46 -6.38 16 18 C -0.19 -1.79 4.21 -26.58 -0.11 -1.91 16 19 C 0.06 0.54 6.57 37.21 0.24 0.78 16 20 O -0.38 -3.86 10.77 -35.23 -0.38 -4.24 16 21 C 0.06 0.51 6.57 37.21 0.24 0.75 16 22 C -0.14 -1.39 4.59 -26.59 -0.12 -1.51 16 23 H 0.03 0.29 6.54 -51.93 -0.34 -0.05 16 24 H 0.07 0.74 5.95 -51.93 -0.31 0.43 16 25 H 0.08 0.98 6.47 -51.93 -0.34 0.64 16 26 H 0.03 0.42 6.94 -51.92 -0.36 0.06 16 27 H 0.07 1.01 5.95 -51.93 -0.31 0.70 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.06 1.11 6.55 -51.93 -0.34 0.77 16 30 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 31 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 32 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.05 0.37 5.04 -51.93 -0.26 0.11 16 34 H 0.05 0.46 6.50 -51.93 -0.34 0.12 16 35 H 0.37 2.48 9.12 45.56 0.42 2.89 16 36 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 37 H 0.08 0.76 6.83 -51.93 -0.35 0.40 16 38 H 0.05 0.38 6.74 -51.93 -0.35 0.03 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.40 6.49 -51.93 -0.34 0.07 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.97 7.78 -51.93 -0.40 0.56 16 43 H 0.07 0.75 6.10 -51.93 -0.32 0.43 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -33.08 335.28 -8.12 -41.21 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.93 Total: 1.43 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 1.17 Total: -14.83 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: -0.25 Total: -33.11 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.84 Total: -10.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.08 -8.12 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191029360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.114 kcal (2) G-P(sol) polarization free energy of solvation -33.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds