Wall clock time and date at job start Tue Mar 31 2020 06:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46891 * 111.00094 * 2 1 4 4 C 1.52995 * 109.47594 * 66.04502 * 3 2 1 5 5 C 1.52999 * 109.47856 * 179.97438 * 4 3 2 6 6 S 1.80997 * 109.47591 * 180.02562 * 5 4 3 7 7 C 1.76200 * 99.99852 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00086 * 359.97438 * 7 6 5 9 9 C 1.38806 * 119.99644 * 179.97438 * 7 6 5 10 10 N 1.31627 * 120.00187 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99700 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47088 * 60.00285 * 11 9 7 13 13 H 1.48497 * 109.46725 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47026 * 300.00033 * 11 9 7 15 15 C 1.46898 * 110.99519 * 236.04392 * 2 1 3 16 16 C 1.53008 * 109.54165 * 183.95649 * 15 2 1 17 17 O 1.42895 * 109.47035 * 54.49441 * 16 15 2 18 18 C 1.53178 * 109.54459 * 63.78203 * 15 2 1 19 19 C 1.53108 * 109.15621 * 183.23970 * 18 15 2 20 20 O 1.42901 * 109.48730 * 57.47305 * 19 18 15 21 21 C 1.42908 * 114.09802 * 298.88599 * 20 19 18 22 22 C 1.53096 * 109.41397 * 61.15751 * 21 20 19 23 23 H 1.09002 * 109.47362 * 59.99831 * 1 2 3 24 24 H 1.08996 * 109.47672 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47045 * 300.00094 * 1 2 3 26 26 H 1.09010 * 109.47341 * 306.04603 * 3 2 1 27 27 H 1.09004 * 109.47223 * 186.05025 * 3 2 1 28 28 H 1.09000 * 109.47153 * 59.99974 * 4 3 2 29 29 H 1.09004 * 109.47262 * 300.00499 * 4 3 2 30 30 H 1.09004 * 109.47230 * 300.00687 * 5 4 3 31 31 H 1.09000 * 109.46623 * 59.99818 * 5 4 3 32 32 H 0.96995 * 120.00382 * 180.02562 * 10 9 7 33 33 H 1.08990 * 109.47275 * 174.49834 * 16 15 2 34 34 H 1.09001 * 109.46884 * 294.49819 * 16 15 2 35 35 H 0.96700 * 113.99980 * 179.97438 * 17 16 15 36 36 H 1.09004 * 109.51741 * 303.05164 * 18 15 2 37 37 H 1.09000 * 109.52514 * 63.24122 * 18 15 2 38 38 H 1.09000 * 109.40587 * 297.49063 * 19 18 15 39 39 H 1.09001 * 109.49021 * 177.50866 * 19 18 15 40 40 H 1.09001 * 109.48110 * 301.18245 * 21 20 19 41 41 H 1.08996 * 109.48755 * 181.15261 * 21 20 19 42 42 H 1.08996 * 109.51903 * 182.48273 * 22 21 20 43 43 H 1.09002 * 109.56913 * 62.33016 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1803 3.4856 1.3185 6 16 1.7504 4.2970 2.8783 7 6 2.4831 5.8773 2.6131 8 1 3.0022 6.0837 1.6888 9 6 2.3931 6.8570 3.5923 10 7 1.7609 6.6053 4.7191 11 14 3.1705 8.5322 3.3116 12 1 2.5628 9.1654 2.1136 13 1 2.9359 9.3920 4.4993 14 1 4.6313 8.3706 3.0988 15 6 1.9953 -0.7660 -1.1376 16 6 3.5217 -0.8276 -1.0508 17 8 3.9058 -1.3476 0.2235 18 6 1.5835 -0.0867 -2.4473 19 6 2.0668 -0.9349 -3.6268 20 8 1.5225 -2.2520 -3.5215 21 6 1.9141 -2.9524 -2.3389 22 6 1.4228 -2.1865 -1.1077 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.5611 1.9273 -0.8310 27 1 3.0797 1.3443 -0.1083 28 1 2.0658 1.5016 2.1491 29 1 0.5472 2.0845 1.4265 30 1 3.2647 3.4582 1.2104 31 1 1.7464 4.0417 0.4875 32 1 1.6977 7.2900 5.4032 33 1 3.9045 -1.4764 -1.8384 34 1 3.9332 0.1743 -1.1734 35 1 4.8622 -1.4151 0.3487 36 1 0.4978 0.0029 -2.4854 37 1 2.0339 0.9044 -2.5009 38 1 3.1554 -0.9892 -3.6119 39 1 1.7383 -0.4794 -4.5610 40 1 3.0006 -3.0329 -2.3071 41 1 1.4756 -3.9502 -2.3453 42 1 1.7583 -2.6956 -0.2043 43 1 0.3338 -2.1405 -1.1168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191029360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:51 Heat of formation + Delta-G solvation = -120.406081 kcal Electronic energy + Delta-G solvation = -21810.329832 eV Core-core repulsion = 18594.708101 eV Total energy + Delta-G solvation = -3215.621730 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55200 -38.51731 -37.12295 -34.90678 -34.59187 -32.37261 -32.18850 -28.89403 -27.89602 -27.05765 -25.57816 -24.64088 -23.79962 -21.99364 -19.58277 -19.40764 -18.31604 -17.69139 -17.09096 -16.90139 -16.76261 -16.59118 -16.13358 -15.96936 -15.49518 -15.07715 -14.87461 -14.62516 -14.33620 -14.23333 -13.64886 -13.48189 -13.25067 -13.19851 -13.07917 -12.89809 -12.70715 -12.54633 -12.43742 -12.11056 -12.02324 -11.87539 -11.57198 -11.38665 -11.13848 -11.05404 -10.80787 -10.46035 -10.32410 -9.14963 -8.67744 -8.37522 -6.14428 1.30503 1.40472 1.47338 1.73153 2.27971 2.79451 2.93715 2.96431 3.31098 3.33310 3.65258 3.74226 3.93147 3.98687 4.12919 4.17840 4.18868 4.23199 4.26615 4.38239 4.45729 4.51562 4.53238 4.61668 4.65783 4.67688 4.73817 4.78097 4.80996 4.88234 5.02246 5.05450 5.15908 5.20991 5.22728 5.34064 5.38445 6.10658 6.16582 6.17267 6.22799 6.98197 7.04087 8.71800 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033427 B = 0.002984 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.435138 B = 9382.611111 C = 9483.235115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.526 5.526 3 C 0.071 3.929 4 C -0.079 4.079 5 C -0.085 4.085 6 S -0.199 6.199 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.015 3.985 10 N -0.908 5.908 11 Si 0.995 3.005 12 H -0.264 1.264 13 H -0.275 1.275 14 H -0.264 1.264 15 C 0.111 3.889 16 C 0.083 3.917 17 O -0.570 6.570 18 C -0.183 4.183 19 C 0.063 3.937 20 O -0.398 6.398 21 C 0.061 3.939 22 C -0.137 4.137 23 H 0.031 0.969 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.272 0.728 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.389 0.611 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -18.176 -17.370 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.249 5.249 3 C -0.058 4.058 4 C -0.118 4.118 5 C -0.234 4.234 6 S 0.030 5.970 7 C -0.687 4.687 8 H 0.091 0.909 9 C -0.190 4.190 10 N -0.544 5.544 11 Si 0.816 3.184 12 H -0.189 1.189 13 H -0.200 1.200 14 H -0.188 1.188 15 C 0.021 3.979 16 C 0.005 3.995 17 O -0.377 6.377 18 C -0.222 4.222 19 C -0.014 4.014 20 O -0.317 6.317 21 C -0.016 4.016 22 C -0.175 4.175 23 H 0.049 0.951 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.238 0.762 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.604 -18.832 -15.893 24.694 hybrid contribution 1.337 2.213 -1.264 2.878 sum 2.942 -16.620 -17.157 24.067 Atomic orbital electron populations 1.22558 0.87507 1.02519 1.00745 1.62089 1.07816 1.12989 1.41996 1.22013 1.00312 0.87931 0.95565 1.21119 1.00576 0.91763 0.98358 1.23131 1.02373 0.98781 0.99137 1.84691 1.75059 1.13984 1.23307 1.23016 1.41059 0.98558 1.06114 0.90869 1.26095 0.95492 1.03451 0.93984 1.70152 1.41199 1.35993 1.07104 0.85057 0.78852 0.76252 0.78194 1.18858 1.19959 1.18832 1.21194 0.94144 0.94332 0.88209 1.22349 0.93295 0.97778 0.86042 1.86581 1.29114 1.86964 1.35014 1.22850 1.02775 1.00570 0.95995 1.22656 0.98207 0.82305 0.98254 1.87923 1.73612 1.28057 1.42145 1.22742 0.99785 0.95891 0.83155 1.22211 1.01175 0.94385 0.99726 0.95087 0.90218 0.91913 0.94451 0.90471 0.92123 0.92124 0.91982 0.92065 0.91940 0.91623 0.93640 0.76237 0.90859 0.90253 0.91805 0.87641 0.92044 0.87381 0.90173 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 8.54 127.69 1.09 1.43 16 2 N -0.53 -12.92 4.34 -871.94 -3.79 -16.70 16 3 C 0.07 1.91 4.07 86.30 0.35 2.26 16 4 C -0.08 -2.71 5.14 30.59 0.16 -2.56 16 5 C -0.08 -3.50 5.67 71.98 0.41 -3.09 16 6 S -0.20 -10.88 21.44 -56.49 -1.21 -12.09 16 7 C -0.54 -31.65 9.50 67.96 0.65 -31.00 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 9 C 0.01 0.84 5.49 84.86 0.47 1.31 16 10 N -0.91 -55.61 13.22 21.65 0.29 -55.32 16 11 Si 0.99 44.16 29.55 68.60 2.03 46.19 16 12 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 C 0.11 2.16 0.24 3.65 0.00 2.16 16 16 C 0.08 1.45 4.85 71.98 0.35 1.80 16 17 O -0.57 -11.44 12.94 -148.98 -1.93 -13.37 16 18 C -0.18 -3.14 4.21 30.69 0.13 -3.01 16 19 C 0.06 0.91 6.57 72.02 0.47 1.38 16 20 O -0.40 -7.10 10.77 -148.98 -1.60 -8.71 16 21 C 0.06 0.91 6.57 72.01 0.47 1.38 16 22 C -0.14 -2.47 4.59 30.68 0.14 -2.33 16 23 H 0.03 0.68 6.54 -2.39 -0.02 0.66 16 24 H 0.08 1.65 5.95 -2.39 -0.01 1.63 16 25 H 0.06 1.61 6.47 -2.38 -0.02 1.59 16 26 H 0.04 0.96 6.94 -2.38 -0.02 0.94 16 27 H 0.08 2.02 5.95 -2.38 -0.01 2.01 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 2.12 6.55 -2.38 -0.02 2.10 16 30 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.07 0.87 5.04 -2.39 -0.01 0.86 16 34 H 0.05 0.80 6.50 -2.39 -0.02 0.78 16 35 H 0.39 4.55 9.12 -74.06 -0.68 3.88 16 36 H 0.07 1.39 6.44 -2.38 -0.02 1.37 16 37 H 0.08 1.35 6.83 -2.39 -0.02 1.34 16 38 H 0.06 0.76 6.74 -2.39 -0.02 0.74 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 0.79 6.49 -2.39 -0.02 0.78 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.62 7.78 -2.39 -0.02 1.61 16 43 H 0.07 1.32 6.10 -2.39 -0.01 1.30 16 Total: -1.00 -71.02 335.28 -1.19 -72.21 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.34 Total: 18.07 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 4.69 Total: -30.27 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -3.50 Total: -72.03 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -3.53 Total: -22.08 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -10.88 SS G_CDS: -1.21 Total: -12.09 kcal Total: -71.02 -1.19 -72.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191029360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.200 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds