Wall clock time and date at job start Tue Mar 31 2020 06:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81407 * 109.46990 * 2 1 4 4 O 1.42101 * 108.57410 * 65.51403 * 3 2 1 5 5 O 1.42096 * 108.58110 * 294.49068 * 3 2 1 6 6 C 1.81397 * 101.92043 * 179.97438 * 3 2 1 7 7 C 1.53120 * 109.52184 * 185.00255 * 6 3 2 8 8 C 1.53039 * 109.27940 * 177.62593 * 7 6 3 9 9 N 1.46844 * 109.52178 * 300.81941 * 8 7 6 10 10 C 1.46901 * 111.00526 * 185.84060 * 9 8 7 11 11 C 1.52992 * 109.47859 * 170.00090 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.46848 * 111.20087 * 61.74385 * 9 8 7 22 22 C 1.53048 * 109.52064 * 298.25789 * 21 9 8 23 23 H 1.09002 * 109.46669 * 60.00019 * 1 2 3 24 24 H 1.08997 * 109.46697 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47052 * 299.99862 * 1 2 3 26 26 H 1.08997 * 109.47329 * 240.00583 * 2 1 3 27 27 H 1.08995 * 109.47318 * 119.99880 * 2 1 3 28 28 H 1.09002 * 109.52530 * 64.87958 * 6 3 2 29 29 H 1.09004 * 109.50479 * 57.68181 * 7 6 3 30 30 H 1.08998 * 109.50625 * 297.56495 * 7 6 3 31 31 H 1.09003 * 109.46575 * 180.80459 * 8 7 6 32 32 H 1.08995 * 109.45502 * 60.82603 * 8 7 6 33 33 H 1.09002 * 109.46980 * 49.99749 * 10 9 8 34 34 H 1.09001 * 109.46628 * 290.00171 * 10 9 8 35 35 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 36 36 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.46339 * 58.26808 * 21 9 8 41 41 H 1.08994 * 109.46869 * 178.24483 * 21 9 8 42 42 H 1.08998 * 109.49998 * 299.23732 * 22 21 9 43 43 H 1.08994 * 109.50211 * 179.11499 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7592 2.3233 -1.2257 6 6 3.9329 1.4720 0.0008 7 6 4.6290 2.8300 0.1267 8 6 6.1434 2.6180 0.1865 9 7 6.4750 1.7692 1.3380 10 6 7.9299 1.6575 1.5082 11 6 8.2366 0.9820 2.8462 12 6 9.7518 0.8651 3.0231 13 6 10.0538 0.2003 4.3414 14 1 9.2459 -0.1083 4.9882 15 6 11.3617 -0.0148 4.7213 16 7 12.3455 0.3606 3.9335 17 14 11.7361 -0.8395 6.3551 18 1 10.4638 -1.1632 7.0493 19 1 12.5003 -2.0899 6.1147 20 1 12.5417 0.0785 7.1998 21 6 5.8562 0.4431 1.2160 22 6 4.3330 0.5903 1.1869 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.2372 0.9917 -0.9292 29 1 4.2949 3.3272 1.0374 30 1 4.3818 3.4472 -0.7370 31 1 6.6414 3.5820 0.2906 32 1 6.4786 2.1332 -0.7304 33 1 8.3749 2.6524 1.4930 34 1 8.3458 1.0609 0.6963 35 1 7.7915 -0.0129 2.8615 36 1 7.8205 1.5785 3.6581 37 1 10.1972 1.8598 3.0077 38 1 10.1673 0.2683 2.2112 39 1 13.2656 0.2096 4.2009 40 1 6.1928 -0.0313 0.2943 41 1 6.1453 -0.1724 2.0677 42 1 3.9944 1.0521 2.1143 43 1 3.8745 -0.3928 1.0806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193242070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:39 Heat of formation + Delta-G solvation = -90.286505 kcal Electronic energy + Delta-G solvation = -21408.347715 eV Core-core repulsion = 18194.032068 eV Total energy + Delta-G solvation = -3214.315647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.14195 -37.22860 -36.28454 -35.00370 -33.63299 -33.09299 -31.23516 -30.77542 -26.95323 -25.03549 -24.10539 -23.25441 -22.14689 -20.19915 -19.88263 -19.05662 -17.42726 -16.51996 -16.39716 -16.23361 -15.51780 -15.16521 -14.72105 -14.53739 -14.38285 -14.06407 -13.93505 -13.54020 -13.46428 -12.90279 -12.59763 -12.41748 -12.31235 -12.25644 -12.19326 -11.93466 -11.66123 -11.49022 -11.37139 -11.18415 -11.07910 -10.89131 -10.81761 -10.53560 -10.43793 -10.15084 -9.61625 -9.34807 -9.05410 -8.35619 -8.14977 -6.00725 -4.02708 -0.31761 2.43652 3.29441 3.30524 3.38067 3.42400 3.67150 3.97275 4.14661 4.16016 4.23933 4.46179 4.47828 4.71971 4.78389 4.96797 5.15576 5.18511 5.23423 5.29910 5.32335 5.34264 5.35492 5.42483 5.51954 5.64744 5.73864 5.79578 5.84140 5.97463 6.05112 6.27365 6.66871 6.73219 7.08882 7.29038 7.33026 7.67616 7.81885 7.99756 8.43021 9.04836 9.61491 11.10802 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033420 B = 0.002837 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.622344 B = 9867.149311 C =10370.662233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.617 4.617 3 S 2.414 3.586 4 O -0.932 6.932 5 O -0.943 6.943 6 C -0.567 4.567 7 C -0.102 4.102 8 C 0.063 3.937 9 N -0.539 5.539 10 C 0.056 3.944 11 C -0.105 4.105 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.059 3.941 22 C -0.108 4.108 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.029 0.971 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.259 0.741 40 H 0.034 0.966 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.396 -0.353 -11.175 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.746 4.746 3 S 2.597 3.403 4 O -0.929 6.929 5 O -0.940 6.940 6 C -0.676 4.676 7 C -0.141 4.141 8 C -0.066 4.066 9 N -0.264 5.264 10 C -0.070 4.070 11 C -0.143 4.143 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.070 4.070 22 C -0.146 4.146 23 H 0.090 0.910 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.149 0.851 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.919 0.663 -10.786 24.439 hybrid contribution 1.259 -1.700 -0.007 2.116 sum -20.660 -1.037 -10.794 23.333 Atomic orbital electron populations 1.21509 0.90432 1.04838 1.03654 1.30250 1.07404 1.25234 1.11710 1.08357 0.78274 0.78254 0.75381 1.93587 1.81021 1.73040 1.45273 1.93571 1.81282 1.73373 1.45797 1.30222 1.23320 1.06298 1.07793 1.21441 0.96643 0.92219 1.03812 1.21962 0.93994 0.98456 0.92220 1.61972 1.11967 1.12623 1.39806 1.22299 0.84671 1.01054 0.99012 1.21669 1.00109 0.98508 0.94050 1.19077 0.88750 0.97055 0.96741 1.21287 0.91851 1.38586 1.03889 0.92611 1.25034 0.96496 0.95882 0.97152 1.69975 0.99086 1.47677 1.36886 0.86543 0.78342 0.79160 0.83996 1.19702 1.21082 1.21000 1.22034 0.92251 0.91256 1.01464 1.21592 0.98610 0.98093 0.96316 0.91003 0.90080 0.90779 0.85073 0.84608 0.84915 0.89090 0.90168 0.89916 0.94789 0.91000 0.95273 0.93470 0.92447 0.96594 0.96883 0.93090 0.94816 0.89008 0.88788 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.92 37.16 0.37 -0.51 16 2 C -0.62 -3.46 5.94 37.16 0.22 -3.24 16 3 S 2.41 21.59 4.26 -107.50 -0.46 21.13 16 4 O -0.93 -11.55 18.06 -57.83 -1.04 -12.60 16 5 O -0.94 -11.29 18.10 -57.83 -1.05 -12.34 16 6 C -0.57 -4.79 2.69 -26.61 -0.07 -4.86 16 7 C -0.10 -1.04 5.38 -26.65 -0.14 -1.18 16 8 C 0.06 0.74 5.46 -3.83 -0.02 0.71 16 9 N -0.54 -7.59 4.66 -234.67 -1.09 -8.68 16 10 C 0.06 0.94 4.96 -3.83 -0.02 0.92 16 11 C -0.11 -2.13 5.08 -26.74 -0.14 -2.27 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 17 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.06 0.71 5.29 -3.83 -0.02 0.69 16 22 C -0.11 -0.97 5.02 -26.65 -0.13 -1.11 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.14 0.54 6.85 -51.93 -0.36 0.19 16 28 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.93 8.02 -51.93 -0.42 0.52 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.05 0.92 6.43 -51.93 -0.33 0.59 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 1.20 6.21 -51.93 -0.32 0.87 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.45 6.56 -51.93 -0.34 0.11 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -35.18 350.56 -10.79 -45.97 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -7.64 Total: -5.28 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -0.51 Total: -23.88 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.36 Total: -34.90 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -2.09 Total: -24.93 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 21.59 SS G_CDS: -0.46 Total: 21.13 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.18 -10.79 -45.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193242070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.312 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds