Wall clock time and date at job start Tue Mar 31 2020 06:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81407 * 109.46990 * 2 1 4 4 O 1.42101 * 108.57410 * 65.51403 * 3 2 1 5 5 O 1.42096 * 108.58110 * 294.49068 * 3 2 1 6 6 C 1.81397 * 101.92043 * 179.97438 * 3 2 1 7 7 C 1.53120 * 109.52184 * 185.00255 * 6 3 2 8 8 C 1.53039 * 109.27940 * 177.62593 * 7 6 3 9 9 N 1.46844 * 109.52178 * 300.81941 * 8 7 6 10 10 C 1.46901 * 111.00526 * 185.84060 * 9 8 7 11 11 C 1.52992 * 109.47859 * 170.00090 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.46848 * 111.20087 * 61.74385 * 9 8 7 22 22 C 1.53048 * 109.52064 * 298.25789 * 21 9 8 23 23 H 1.09002 * 109.46669 * 60.00019 * 1 2 3 24 24 H 1.08997 * 109.46697 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47052 * 299.99862 * 1 2 3 26 26 H 1.08997 * 109.47329 * 240.00583 * 2 1 3 27 27 H 1.08995 * 109.47318 * 119.99880 * 2 1 3 28 28 H 1.09002 * 109.52530 * 64.87958 * 6 3 2 29 29 H 1.09004 * 109.50479 * 57.68181 * 7 6 3 30 30 H 1.08998 * 109.50625 * 297.56495 * 7 6 3 31 31 H 1.09003 * 109.46575 * 180.80459 * 8 7 6 32 32 H 1.08995 * 109.45502 * 60.82603 * 8 7 6 33 33 H 1.09002 * 109.46980 * 49.99749 * 10 9 8 34 34 H 1.09001 * 109.46628 * 290.00171 * 10 9 8 35 35 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 36 36 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.46339 * 58.26808 * 21 9 8 41 41 H 1.08994 * 109.46869 * 178.24483 * 21 9 8 42 42 H 1.08998 * 109.49998 * 299.23732 * 22 21 9 43 43 H 1.08994 * 109.50211 * 179.11499 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7592 2.3233 -1.2257 6 6 3.9329 1.4720 0.0008 7 6 4.6290 2.8300 0.1267 8 6 6.1434 2.6180 0.1865 9 7 6.4750 1.7692 1.3380 10 6 7.9299 1.6575 1.5082 11 6 8.2366 0.9820 2.8462 12 6 9.7518 0.8651 3.0231 13 6 10.0538 0.2003 4.3414 14 1 9.2459 -0.1083 4.9882 15 6 11.3617 -0.0148 4.7213 16 7 12.3455 0.3606 3.9335 17 14 11.7361 -0.8395 6.3551 18 1 10.4638 -1.1632 7.0493 19 1 12.5003 -2.0899 6.1147 20 1 12.5417 0.0785 7.1998 21 6 5.8562 0.4431 1.2160 22 6 4.3330 0.5903 1.1869 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.2372 0.9917 -0.9292 29 1 4.2949 3.3272 1.0374 30 1 4.3818 3.4472 -0.7370 31 1 6.6414 3.5820 0.2906 32 1 6.4786 2.1332 -0.7304 33 1 8.3749 2.6524 1.4930 34 1 8.3458 1.0609 0.6963 35 1 7.7915 -0.0129 2.8615 36 1 7.8205 1.5785 3.6581 37 1 10.1972 1.8598 3.0077 38 1 10.1673 0.2683 2.2112 39 1 13.2656 0.2096 4.2009 40 1 6.1928 -0.0313 0.2943 41 1 6.1453 -0.1724 2.0677 42 1 3.9944 1.0521 2.1143 43 1 3.8745 -0.3928 1.0806 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193242070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:39 Heat of formation + Delta-G solvation = -115.870221 kcal Electronic energy + Delta-G solvation = -21409.457108 eV Core-core repulsion = 18194.032068 eV Total energy + Delta-G solvation = -3215.425041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10828 -38.02209 -37.07270 -36.44674 -34.86276 -34.06927 -32.68098 -31.85444 -28.58571 -26.17537 -25.02610 -24.04429 -23.64835 -21.57695 -21.00483 -19.74793 -18.52356 -18.09048 -17.18132 -17.09031 -16.61256 -16.31071 -16.27793 -15.60418 -15.29552 -15.00869 -14.87908 -14.62267 -14.30344 -13.99207 -13.76350 -13.49469 -13.29616 -13.22154 -13.15914 -13.05277 -12.90445 -12.66561 -12.47990 -12.36427 -12.30685 -12.24189 -11.99312 -11.74152 -11.58300 -11.36994 -11.28375 -11.12380 -10.79160 -10.54795 -9.24097 -8.20153 -6.30864 -0.97312 1.40167 1.40871 1.54206 1.81977 2.41136 2.64965 2.93528 3.03615 3.13291 3.43467 3.55229 3.78284 3.92847 3.99013 4.11183 4.19657 4.30979 4.39754 4.42528 4.49557 4.59725 4.61968 4.69132 4.73702 4.77339 4.81981 4.90294 4.91444 5.00438 5.02679 5.12591 5.13950 5.20895 5.28833 5.53416 5.75698 5.86872 6.10655 6.22813 6.28563 6.86589 7.38556 8.92014 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033420 B = 0.002837 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.622344 B = 9867.149311 C =10370.662233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.596 4.596 3 S 2.412 3.588 4 O -0.977 6.977 5 O -0.980 6.980 6 C -0.561 4.561 7 C -0.108 4.108 8 C 0.061 3.939 9 N -0.551 5.551 10 C 0.068 3.932 11 C -0.090 4.090 12 C 0.025 3.975 13 C -0.541 4.541 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.279 1.279 21 C 0.051 3.949 22 C -0.108 4.108 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.162 0.838 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.055 0.945 36 H 0.049 0.951 37 H -0.011 1.011 38 H -0.009 1.009 39 H 0.263 0.737 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.774 -2.401 -11.349 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.729 4.729 3 S 2.601 3.399 4 O -0.974 6.974 5 O -0.978 6.978 6 C -0.671 4.671 7 C -0.147 4.147 8 C -0.068 4.068 9 N -0.276 5.276 10 C -0.059 4.059 11 C -0.128 4.128 12 C -0.012 4.012 13 C -0.579 4.579 14 H 0.078 0.922 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.789 3.211 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.205 1.205 21 C -0.077 4.077 22 C -0.146 4.146 23 H 0.087 0.913 24 H 0.122 0.878 25 H 0.086 0.914 26 H 0.182 0.818 27 H 0.178 0.822 28 H 0.180 0.820 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.008 0.992 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.312 -1.340 -10.966 25.797 hybrid contribution 1.669 -1.092 0.011 1.995 sum -21.643 -2.431 -10.955 24.379 Atomic orbital electron populations 1.21688 0.90711 1.06190 1.03356 1.30091 1.07082 1.21113 1.14582 1.08135 0.78169 0.79908 0.73689 1.93531 1.81741 1.75510 1.46632 1.93522 1.81838 1.75653 1.46743 1.30164 1.22571 1.05304 1.09013 1.21465 0.95629 0.93747 1.03863 1.22022 0.95135 0.97985 0.91631 1.61905 1.09814 1.14330 1.41534 1.21993 0.86980 1.00161 0.96813 1.21404 0.96107 0.99308 0.95939 1.18976 0.92240 0.94788 0.95219 1.21728 0.92336 1.38835 1.04960 0.92238 1.25989 0.96325 0.96460 1.01165 1.70103 0.99606 1.48801 1.39001 0.85400 0.78489 0.78101 0.79069 1.18529 1.20279 1.20479 1.22151 0.94214 0.89945 1.01403 1.21661 0.96471 1.00412 0.96075 0.91288 0.87764 0.91441 0.81847 0.82184 0.82025 0.90484 0.88800 0.90176 0.93730 0.91605 0.95380 0.92680 0.93218 0.99218 0.99047 0.92794 0.93755 0.90282 0.89995 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.92 71.98 0.71 -0.76 16 2 C -0.60 -4.35 5.94 71.98 0.43 -3.92 16 3 S 2.41 39.24 4.26 -56.49 -0.24 39.00 16 4 O -0.98 -24.03 18.06 -127.37 -2.30 -26.33 16 5 O -0.98 -22.58 18.10 -127.37 -2.31 -24.88 16 6 C -0.56 -8.09 2.69 30.67 0.08 -8.00 16 7 C -0.11 -2.09 5.38 30.65 0.16 -1.93 16 8 C 0.06 1.36 5.46 86.33 0.47 1.84 16 9 N -0.55 -15.11 4.66 -896.37 -4.17 -19.28 16 10 C 0.07 2.29 4.96 86.30 0.43 2.72 16 11 C -0.09 -3.67 5.08 30.59 0.16 -3.52 16 12 C 0.03 1.34 4.97 29.85 0.15 1.49 16 13 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 14 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 15 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 16 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 17 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 C 0.05 1.15 5.29 86.33 0.46 1.60 16 22 C -0.11 -1.65 5.02 30.65 0.15 -1.50 16 23 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.16 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.16 0.47 6.85 -2.39 -0.02 0.46 16 28 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.79 8.02 -2.39 -0.02 1.77 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 2.26 7.99 -2.39 -0.02 2.24 16 34 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 35 H 0.05 2.15 6.43 -2.39 -0.02 2.13 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 40 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.95 6.21 -2.39 -0.01 1.93 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.12 0.80 6.56 -2.39 -0.02 0.79 16 Total: -1.00 -78.04 350.56 -1.86 -79.90 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 0.96 Total: 4.39 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 3.90 Total: -42.31 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -3.89 Total: -76.07 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -4.60 Total: -51.22 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 39.24 SS G_CDS: -0.24 Total: 39.00 kcal Total: -78.04 -1.86 -79.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193242070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.975 kcal (2) G-P(sol) polarization free energy of solvation -78.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds