Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47514 * 2 1 4 4 C 1.46500 * 119.99942 * 270.00054 * 3 2 1 5 5 C 1.52992 * 109.47049 * 269.99735 * 4 3 2 6 6 C 1.34774 * 119.99973 * 89.99556 * 3 2 1 7 7 O 1.21725 * 120.00319 * 0.02562 * 6 3 2 8 8 C 1.46257 * 119.99841 * 180.02562 * 6 3 2 9 9 C 1.35024 * 119.99960 * 186.96811 * 8 6 3 10 10 C 1.46959 * 120.00044 * 10.96856 * 9 8 6 11 11 C 1.40027 * 120.09888 * 226.00773 * 10 9 8 12 12 C 1.37598 * 119.88939 * 179.78887 * 11 10 9 13 13 C 1.39176 * 120.10881 * 0.48959 * 12 11 10 14 14 O 1.35567 * 119.90199 * 179.76184 * 13 12 11 15 15 C 1.34784 * 116.99844 * 174.19746 * 14 13 12 16 16 H 1.07995 * 120.00134 * 5.07698 * 15 14 13 17 17 C 1.38726 * 119.99898 * 185.06867 * 15 14 13 18 18 N 1.31502 * 119.99684 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99829 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47193 * 60.00194 * 19 17 15 21 21 H 1.48501 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47325 * 299.99906 * 19 17 15 23 23 C 1.39179 * 120.19723 * 359.73879 * 13 12 11 24 24 C 1.37594 * 120.10327 * 0.02773 * 23 13 12 25 25 H 1.09002 * 109.47300 * 300.00469 * 1 2 3 26 26 H 1.09002 * 109.46743 * 60.00176 * 1 2 3 27 27 H 1.08994 * 109.47455 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47453 * 239.99807 * 2 1 3 29 29 H 1.09004 * 109.47258 * 119.99825 * 2 1 3 30 30 H 1.09007 * 109.47145 * 29.99865 * 4 3 2 31 31 H 1.08998 * 109.47216 * 149.99315 * 4 3 2 32 32 H 1.08994 * 109.47552 * 60.00224 * 5 4 3 33 33 H 1.09002 * 109.47128 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47369 * 299.99599 * 5 4 3 35 35 H 1.08002 * 120.00034 * 7.25116 * 8 6 3 36 36 H 1.08001 * 119.99632 * 190.97214 * 9 8 6 37 37 H 1.07997 * 120.05714 * 359.97438 * 11 10 9 38 38 H 1.08006 * 119.94818 * 180.22757 * 12 11 10 39 39 H 0.97001 * 119.99814 * 179.97438 * 18 17 15 40 40 H 1.08005 * 119.94697 * 180.02562 * 23 13 12 41 41 H 1.08002 * 120.04878 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7103 6 6 2.2430 2.0165 1.1672 7 8 2.0404 1.4427 2.2214 8 6 2.7301 3.3956 1.1671 9 6 3.0888 3.9849 2.3278 10 6 3.2219 3.1800 3.5502 11 6 2.6605 3.6296 4.7516 12 6 2.7840 2.8704 5.8926 13 6 3.4742 1.6625 5.8561 14 8 3.5974 0.9202 6.9838 15 6 4.1710 -0.2930 6.8581 16 1 4.5820 -0.6002 5.9078 17 6 4.2335 -1.1471 7.9495 18 7 3.7326 -0.7732 9.1065 19 14 5.0290 -2.8282 7.7755 20 1 6.4470 -2.6648 7.3662 21 1 4.9678 -3.5418 9.0764 22 1 4.3040 -3.6148 6.7455 23 6 4.0379 1.2140 4.6652 24 6 3.9154 1.9641 3.5182 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0956 3.1410 -1.1385 32 1 3.8745 0.7622 -1.8407 33 1 3.8894 2.3455 -2.6541 34 1 4.3884 2.2155 -0.9507 35 1 2.7984 3.9441 0.2393 36 1 3.2779 5.0478 2.3578 37 1 2.1289 4.5692 4.7821 38 1 2.3481 3.2146 6.8189 39 1 3.7760 -1.3705 9.8695 40 1 4.5723 0.2757 4.6414 41 1 4.3536 1.6154 2.5947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211730437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -9.461465 kcal Electronic energy + Delta-G solvation = -22750.102764 eV Core-core repulsion = 19403.848002 eV Total energy + Delta-G solvation = -3346.254762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93911 -38.75804 -36.79942 -35.71782 -33.27699 -32.26197 -31.79402 -30.06536 -29.57186 -27.94384 -25.35945 -24.20720 -23.62169 -22.16437 -21.58182 -20.23437 -18.13413 -17.94906 -17.43389 -16.73331 -16.14974 -15.08454 -14.67761 -14.46489 -14.21597 -13.99352 -13.83484 -13.66704 -13.49467 -13.33351 -12.81722 -12.73454 -12.67831 -12.53123 -12.18374 -12.06258 -11.77115 -11.64747 -11.44706 -11.15966 -11.00138 -10.89541 -10.72904 -10.53352 -10.40732 -9.41665 -9.31989 -9.13251 -8.66014 -8.60283 -7.88559 -6.84418 -6.42220 -3.97796 1.30871 2.44687 2.71651 3.13822 3.15717 3.18452 3.19944 3.66377 4.00454 4.67598 4.72002 4.80287 4.99291 5.11697 5.13765 5.15823 5.30951 5.32475 5.36887 5.40153 5.49636 5.57109 5.67603 5.72569 5.78499 5.88064 5.96773 5.99478 6.17940 6.27880 6.34025 6.45933 6.60653 6.72887 6.81996 7.07081 7.16052 7.36292 7.49776 7.54276 7.60926 7.95608 8.04647 8.57988 9.03611 9.75407 10.75738 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.004183 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.993299 B = 6692.633385 C = 7566.349245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.620 5.620 4 C 0.108 3.892 5 C -0.172 4.172 6 C 0.540 3.460 7 O -0.509 6.509 8 C -0.264 4.264 9 C 0.023 3.977 10 C -0.184 4.184 11 C -0.047 4.047 12 C -0.207 4.207 13 C 0.169 3.831 14 O -0.174 6.174 15 C -0.389 4.389 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.241 4.241 24 C 0.010 3.990 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.271 0.729 40 H 0.124 0.876 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 5.889 -20.895 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.355 5.355 4 C -0.016 4.016 5 C -0.230 4.230 6 C 0.332 3.668 7 O -0.384 6.384 8 C -0.285 4.285 9 C 0.004 3.996 10 C -0.185 4.185 11 C -0.066 4.066 12 C -0.226 4.226 13 C 0.115 3.885 14 O -0.076 6.076 15 C -0.465 4.465 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.260 4.260 24 C -0.009 4.009 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.148 5.485 -19.821 20.678 hybrid contribution 0.335 -0.872 -0.442 1.034 sum -1.813 4.613 -20.264 20.861 Atomic orbital electron populations 1.22112 0.96254 1.01926 1.02090 1.21318 0.94130 0.82741 1.02814 1.48013 1.67430 1.14074 1.05990 1.21494 0.96468 0.97902 0.85696 1.22225 0.97109 1.02240 1.01462 1.18502 0.78180 0.87069 0.83078 1.90996 1.50695 1.67087 1.29656 1.22758 1.11002 0.95999 0.98750 1.22352 0.87681 0.97861 0.91722 1.18287 1.09543 0.98055 0.92628 1.20607 0.97126 0.97632 0.91187 1.19995 1.07623 0.96163 0.98860 1.19518 0.91375 0.91117 0.86513 1.83900 1.68837 1.27478 1.27408 1.21336 1.36818 0.89791 0.98595 0.89027 1.25302 0.97239 0.99515 0.94442 1.70010 1.42061 1.36830 1.00707 0.85782 0.79399 0.80272 0.78007 1.19474 1.20246 1.19467 1.20950 1.09075 1.02830 0.93158 1.20529 0.93607 0.91126 0.95599 0.92060 0.93069 0.91903 0.91267 0.89750 0.90959 0.90248 0.92496 0.91816 0.92053 0.86002 0.86114 0.87213 0.86666 0.91950 0.85877 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.24 37.16 0.38 -1.42 16 2 C 0.11 1.31 6.13 -4.04 -0.02 1.29 16 3 N -0.62 -7.54 2.47 -175.39 -0.43 -7.97 16 4 C 0.11 0.89 5.88 -4.05 -0.02 0.87 16 5 C -0.17 -1.31 10.24 37.15 0.38 -0.93 16 6 C 0.54 8.43 6.73 -13.04 -0.09 8.34 16 7 O -0.51 -10.33 11.92 5.17 0.06 -10.26 16 8 C -0.26 -3.49 9.15 -37.50 -0.34 -3.83 16 9 C 0.02 0.34 9.79 -37.19 -0.36 -0.03 16 10 C -0.18 -3.47 4.43 -105.03 -0.46 -3.94 16 11 C -0.05 -0.91 9.79 -39.14 -0.38 -1.30 16 12 C -0.21 -4.71 9.97 -39.47 -0.39 -5.10 16 13 C 0.17 4.38 6.66 -38.88 -0.26 4.12 16 14 O -0.17 -5.18 9.74 0.74 0.01 -5.17 16 15 C -0.39 -11.32 9.48 30.91 0.29 -11.02 16 16 H 0.09 2.49 5.18 -52.49 -0.27 2.22 16 17 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 18 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 19 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 C -0.24 -5.74 9.14 -39.47 -0.36 -6.10 16 24 C 0.01 0.21 6.68 -39.15 -0.26 -0.06 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 29 H 0.08 1.21 7.42 -51.93 -0.39 0.82 16 30 H 0.07 0.49 8.07 -51.92 -0.42 0.07 16 31 H 0.08 0.59 6.01 -51.93 -0.31 0.27 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.12 1.18 6.14 -52.49 -0.32 0.86 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.12 2.95 5.62 -52.48 -0.29 2.65 16 41 H 0.10 1.85 7.27 -52.49 -0.38 1.47 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -33.94 343.60 -7.21 -41.15 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.75 Total: 4.15 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.01 Total: -18.08 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.32 Total: -33.04 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.07 Total: -15.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.94 -7.21 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211730437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.684 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds