Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47514 * 2 1 4 4 C 1.46500 * 119.99942 * 270.00054 * 3 2 1 5 5 C 1.52992 * 109.47049 * 269.99735 * 4 3 2 6 6 C 1.34774 * 119.99973 * 89.99556 * 3 2 1 7 7 O 1.21725 * 120.00319 * 0.02562 * 6 3 2 8 8 C 1.46257 * 119.99841 * 180.02562 * 6 3 2 9 9 C 1.35024 * 119.99960 * 186.96811 * 8 6 3 10 10 C 1.46959 * 120.00044 * 10.96856 * 9 8 6 11 11 C 1.40027 * 120.09888 * 226.00773 * 10 9 8 12 12 C 1.37598 * 119.88939 * 179.78887 * 11 10 9 13 13 C 1.39176 * 120.10881 * 0.48959 * 12 11 10 14 14 O 1.35567 * 119.90199 * 179.76184 * 13 12 11 15 15 C 1.34784 * 116.99844 * 174.19746 * 14 13 12 16 16 H 1.07995 * 120.00134 * 5.07698 * 15 14 13 17 17 C 1.38726 * 119.99898 * 185.06867 * 15 14 13 18 18 N 1.31502 * 119.99684 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99829 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47193 * 60.00194 * 19 17 15 21 21 H 1.48501 * 109.46941 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47325 * 299.99906 * 19 17 15 23 23 C 1.39179 * 120.19723 * 359.73879 * 13 12 11 24 24 C 1.37594 * 120.10327 * 0.02773 * 23 13 12 25 25 H 1.09002 * 109.47300 * 300.00469 * 1 2 3 26 26 H 1.09002 * 109.46743 * 60.00176 * 1 2 3 27 27 H 1.08994 * 109.47455 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47453 * 239.99807 * 2 1 3 29 29 H 1.09004 * 109.47258 * 119.99825 * 2 1 3 30 30 H 1.09007 * 109.47145 * 29.99865 * 4 3 2 31 31 H 1.08998 * 109.47216 * 149.99315 * 4 3 2 32 32 H 1.08994 * 109.47552 * 60.00224 * 5 4 3 33 33 H 1.09002 * 109.47128 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.47369 * 299.99599 * 5 4 3 35 35 H 1.08002 * 120.00034 * 7.25116 * 8 6 3 36 36 H 1.08001 * 119.99632 * 190.97214 * 9 8 6 37 37 H 1.07997 * 120.05714 * 359.97438 * 11 10 9 38 38 H 1.08006 * 119.94818 * 180.22757 * 12 11 10 39 39 H 0.97001 * 119.99814 * 179.97438 * 18 17 15 40 40 H 1.08005 * 119.94697 * 180.02562 * 23 13 12 41 41 H 1.08002 * 120.04878 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7103 6 6 2.2430 2.0165 1.1672 7 8 2.0404 1.4427 2.2214 8 6 2.7301 3.3956 1.1671 9 6 3.0888 3.9849 2.3278 10 6 3.2219 3.1800 3.5502 11 6 2.6605 3.6296 4.7516 12 6 2.7840 2.8704 5.8926 13 6 3.4742 1.6625 5.8561 14 8 3.5974 0.9202 6.9838 15 6 4.1710 -0.2930 6.8581 16 1 4.5820 -0.6002 5.9078 17 6 4.2335 -1.1471 7.9495 18 7 3.7326 -0.7732 9.1065 19 14 5.0290 -2.8282 7.7755 20 1 6.4470 -2.6648 7.3662 21 1 4.9678 -3.5418 9.0764 22 1 4.3040 -3.6148 6.7455 23 6 4.0379 1.2140 4.6652 24 6 3.9154 1.9641 3.5182 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0956 3.1410 -1.1385 32 1 3.8745 0.7622 -1.8407 33 1 3.8894 2.3455 -2.6541 34 1 4.3884 2.2155 -0.9507 35 1 2.7984 3.9441 0.2393 36 1 3.2779 5.0478 2.3578 37 1 2.1289 4.5692 4.7821 38 1 2.3481 3.2146 6.8189 39 1 3.7760 -1.3705 9.8695 40 1 4.5723 0.2757 4.6414 41 1 4.3536 1.6154 2.5947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211730437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = -30.835763 kcal Electronic energy + Delta-G solvation = -22751.029623 eV Core-core repulsion = 19403.848002 eV Total energy + Delta-G solvation = -3347.181621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.21091 -40.49139 -38.39136 -36.98142 -34.69981 -34.06472 -32.82612 -31.80179 -30.56871 -29.44720 -27.36934 -25.42266 -24.36939 -23.68747 -23.21555 -21.54504 -19.88886 -19.31885 -18.91666 -18.21891 -17.25011 -16.49539 -16.33146 -16.12068 -15.61904 -15.50170 -15.16935 -15.00244 -14.76117 -14.54788 -14.34936 -14.10710 -13.86606 -13.59658 -13.55593 -13.43235 -12.99856 -12.91712 -12.61681 -12.54492 -12.42696 -12.23212 -12.15300 -11.97289 -11.83778 -11.24772 -10.92561 -10.57830 -10.38200 -9.78187 -9.43581 -8.58175 -8.49963 -6.16929 0.01932 0.70570 1.10119 1.30449 1.43658 1.47591 2.15621 2.19211 2.47999 2.85023 3.19761 3.52751 3.77888 3.96894 4.07193 4.14769 4.16599 4.21837 4.25750 4.49227 4.51005 4.53938 4.56237 4.67420 4.73458 4.76599 4.95748 5.01034 5.04072 5.06012 5.09666 5.20190 5.24944 5.34106 5.40089 5.43478 5.65225 5.71635 5.75130 5.85608 6.01021 6.24733 6.57218 6.93889 7.41967 7.75331 8.72872 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.004183 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.993299 B = 6692.633385 C = 7566.349245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.612 5.612 4 C 0.100 3.900 5 C -0.169 4.169 6 C 0.523 3.477 7 O -0.570 6.570 8 C -0.232 4.232 9 C 0.003 3.997 10 C -0.155 4.155 11 C -0.048 4.048 12 C -0.219 4.219 13 C 0.124 3.876 14 O -0.229 6.229 15 C -0.417 4.417 16 H 0.095 0.905 17 C -0.021 4.021 18 N -0.918 5.918 19 Si 1.018 2.982 20 H -0.255 1.255 21 H -0.265 1.265 22 H -0.262 1.262 23 C -0.254 4.254 24 C 0.006 3.994 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.156 0.844 38 H 0.114 0.886 39 H 0.274 0.726 40 H 0.108 0.892 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.012 7.739 -25.871 27.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.014 4.014 3 N -0.345 5.345 4 C -0.022 4.022 5 C -0.227 4.227 6 C 0.315 3.685 7 O -0.450 6.450 8 C -0.252 4.252 9 C -0.016 4.016 10 C -0.156 4.156 11 C -0.065 4.065 12 C -0.238 4.238 13 C 0.074 3.926 14 O -0.135 6.135 15 C -0.493 4.493 16 H 0.112 0.888 17 C -0.218 4.218 18 N -0.556 5.556 19 Si 0.837 3.163 20 H -0.179 1.179 21 H -0.189 1.189 22 H -0.186 1.186 23 C -0.274 4.274 24 C -0.012 4.012 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.189 0.811 36 H 0.189 0.811 37 H 0.174 0.826 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.126 0.874 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.217 7.384 -24.910 26.076 hybrid contribution 0.215 -1.198 0.596 1.355 sum -2.002 6.186 -24.314 25.168 Atomic orbital electron populations 1.22036 0.95479 1.02573 1.01482 1.21385 0.94741 0.82762 1.02534 1.48154 1.65566 1.14118 1.06702 1.21860 0.97514 0.98688 0.84090 1.22199 0.96098 1.02111 1.02286 1.19155 0.77930 0.88175 0.83216 1.90996 1.53360 1.68632 1.32023 1.23188 1.07443 0.94341 1.00264 1.22617 0.89767 0.99700 0.89505 1.18874 1.05324 0.96763 0.94592 1.21106 0.96654 0.98749 0.90037 1.20308 1.07366 0.95659 1.00487 1.20042 0.93590 0.92356 0.86649 1.83864 1.71736 1.28478 1.29439 1.21762 1.37725 0.90547 0.99292 0.88781 1.26607 0.97684 1.03861 0.93677 1.70151 1.44829 1.38848 1.01796 0.84668 0.78763 0.74310 0.78555 1.17946 1.18937 1.18617 1.20988 1.09446 1.03005 0.93925 1.20702 0.93945 0.91850 0.94692 0.95392 0.90676 0.90821 0.88061 0.93484 0.88573 0.88375 0.93231 0.89208 0.93442 0.81087 0.81124 0.82649 0.86766 0.91661 0.87443 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 10.24 71.98 0.74 -2.42 16 2 C 0.11 2.36 6.13 86.38 0.53 2.89 16 3 N -0.61 -13.01 2.47 -827.02 -2.04 -15.06 16 4 C 0.10 1.13 5.88 86.38 0.51 1.64 16 5 C -0.17 -1.79 10.24 71.98 0.74 -1.05 16 6 C 0.52 15.02 6.73 86.33 0.58 15.60 16 7 O -0.57 -23.10 11.92 -4.43 -0.05 -23.16 16 8 C -0.23 -4.93 9.15 23.62 0.22 -4.71 16 9 C 0.00 0.08 9.79 23.82 0.23 0.31 16 10 C -0.15 -5.53 4.43 -20.13 -0.09 -5.62 16 11 C -0.05 -1.78 9.79 22.55 0.22 -1.56 16 12 C -0.22 -10.37 9.97 22.34 0.22 -10.14 16 13 C 0.12 6.91 6.66 22.72 0.15 7.07 16 14 O -0.23 -14.91 9.74 -20.26 -0.20 -15.10 16 15 C -0.42 -26.25 9.48 67.94 0.64 -25.61 16 16 H 0.09 5.58 5.18 -2.91 -0.02 5.56 16 17 C -0.02 -1.24 5.49 84.86 0.47 -0.77 16 18 N -0.92 -58.80 13.67 21.62 0.30 -58.51 16 19 Si 1.02 45.38 29.55 68.60 2.03 47.41 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 C -0.25 -12.91 9.14 22.34 0.20 -12.71 16 24 C 0.01 0.27 6.68 22.55 0.15 0.42 16 25 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.10 1.54 8.07 -2.39 -0.02 1.52 16 29 H 0.05 1.38 7.42 -2.38 -0.02 1.37 16 30 H 0.10 0.72 8.07 -2.38 -0.02 0.70 16 31 H 0.10 0.78 6.01 -2.39 -0.01 0.77 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.17 2.01 6.14 -2.91 -0.02 1.99 16 36 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.16 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.11 5.26 8.06 -2.91 -0.02 5.24 16 39 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 40 H 0.11 5.62 5.62 -2.91 -0.02 5.60 16 41 H 0.11 4.17 7.27 -2.91 -0.02 4.15 16 Total: -1.00 -84.61 343.60 6.56 -78.05 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 1.02 Total: 23.04 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 5.51 Total: -36.68 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.75 Total: -73.57 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.25 Total: -38.26 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -84.61 6.56 -78.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211730437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.214 kcal (2) G-P(sol) polarization free energy of solvation -84.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds