Wall clock time and date at job start Tue Mar 31 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99889 * 2 1 4 4 C 1.53000 * 109.46728 * 287.40916 * 3 2 1 5 5 C 1.50704 * 109.46955 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99423 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00483 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99560 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00326 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47128 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47019 * 120.00215 * 9 7 5 12 12 H 1.48503 * 109.47024 * 240.00080 * 9 7 5 13 13 C 1.46899 * 110.99961 * 123.95297 * 2 1 3 14 14 H 1.09000 * 109.46866 * 270.23898 * 13 2 1 15 15 C 1.52993 * 109.47045 * 30.24488 * 13 2 1 16 16 C 1.52995 * 109.47338 * 59.99814 * 15 13 2 17 17 C 1.52997 * 109.47201 * 60.00325 * 16 15 13 18 18 C 1.53003 * 109.46935 * 299.99553 * 17 16 15 19 19 C 1.53000 * 109.46815 * 150.24314 * 13 2 1 20 20 H 1.09000 * 109.47111 * 179.97438 * 19 13 2 21 21 S 1.81402 * 109.47441 * 59.99739 * 19 13 2 22 22 C 1.81394 * 101.92188 * 170.42663 * 21 19 13 23 23 O 1.42098 * 108.58000 * 284.91932 * 21 19 13 24 24 O 1.42106 * 108.57464 * 55.94340 * 21 19 13 25 25 H 1.08995 * 109.47087 * 301.53870 * 1 2 3 26 26 H 1.09003 * 109.47014 * 61.53824 * 1 2 3 27 27 H 1.09001 * 109.47051 * 181.53914 * 1 2 3 28 28 H 1.08997 * 109.46807 * 47.41014 * 3 2 1 29 29 H 1.08994 * 109.46655 * 167.41084 * 3 2 1 30 30 H 1.08997 * 109.47557 * 299.99639 * 4 3 2 31 31 H 1.09003 * 109.47175 * 60.00565 * 4 3 2 32 32 H 0.97006 * 119.99732 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46787 * 179.97438 * 15 13 2 34 34 H 1.09003 * 109.47360 * 299.99201 * 15 13 2 35 35 H 1.09000 * 109.47167 * 299.99749 * 16 15 13 36 36 H 1.09010 * 109.47216 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47312 * 180.02562 * 17 16 15 38 38 H 1.08998 * 109.47855 * 60.00076 * 17 16 15 39 39 H 1.08994 * 109.47193 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47088 * 300.00365 * 18 17 16 41 41 H 1.09001 * 109.46692 * 60.00796 * 22 21 19 42 42 H 1.09004 * 109.47256 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.47738 * 300.00076 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.7753 2.0022 -1.3765 5 6 2.3147 3.4094 -1.3763 6 1 2.7695 3.8132 -0.4838 7 6 2.2286 4.1809 -2.5157 8 7 1.6753 3.6889 -3.6026 9 14 2.8980 5.9248 -2.5157 10 1 3.4665 6.2368 -1.1798 11 1 3.9602 6.0473 -3.5461 12 1 1.7997 6.8765 -2.8214 13 6 1.9955 -0.7660 1.1376 14 1 2.1216 -0.1038 1.9942 15 6 1.0149 -1.8839 1.4971 16 6 0.8378 -2.8133 0.2948 17 6 2.1896 -3.4225 -0.0824 18 6 3.1703 -2.3045 -0.4421 19 6 3.3473 -1.3751 0.7603 20 1 3.7382 -1.9431 1.6046 21 16 4.5100 -0.0496 0.3339 22 6 6.0794 -0.9514 0.2156 23 8 4.1759 0.4487 -0.9542 24 8 4.5882 0.8535 1.4283 25 1 -0.3633 0.5375 0.8758 26 1 -0.3633 0.4898 -0.9035 27 1 -0.3633 -1.0273 0.0276 28 1 1.4764 1.9599 0.7566 29 1 3.0619 1.3512 0.2240 30 1 2.2943 1.4138 -2.1330 31 1 0.7087 2.0225 -1.6004 32 1 1.6143 4.2318 -4.4042 33 1 1.4057 -2.4525 2.3409 34 1 0.0518 -1.4500 1.7660 35 1 0.4471 -2.2449 -0.5493 36 1 0.1395 -3.6101 0.5511 37 1 2.0636 -4.0842 -0.9393 38 1 2.5803 -3.9909 0.7616 39 1 4.1334 -2.7384 -0.7104 40 1 2.7796 -1.7362 -1.2862 41 1 6.0014 -1.7166 -0.5567 42 1 6.8792 -0.2568 -0.0413 43 1 6.3008 -1.4228 1.1732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245439713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:44 Heat of formation + Delta-G solvation = -43.932535 kcal Electronic energy + Delta-G solvation = -23557.039517 eV Core-core repulsion = 20344.733929 eV Total energy + Delta-G solvation = -3212.305588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.65283 -36.54381 -36.03991 -35.06993 -32.77690 -31.57336 -30.34614 -29.50976 -28.44118 -25.81563 -23.86164 -22.94421 -21.63423 -20.31889 -19.14805 -18.38833 -16.83018 -16.40739 -16.17930 -15.47807 -15.11156 -14.91231 -14.46614 -14.23638 -14.08529 -13.50549 -13.18397 -13.14196 -12.92243 -12.73441 -12.39656 -12.08522 -11.90375 -11.70798 -11.54550 -11.43716 -11.29965 -11.16578 -11.01026 -10.93789 -10.83260 -10.45486 -10.37944 -10.24733 -10.17160 -9.63635 -9.45500 -9.17454 -8.85911 -8.10516 -7.73256 -5.78578 -3.76994 0.29853 3.06570 3.43806 3.50299 3.56396 3.96793 4.12896 4.38065 4.56342 4.64135 4.71787 4.83647 4.89671 5.02366 5.15303 5.24987 5.31074 5.39272 5.45149 5.57818 5.61450 5.64425 5.71086 5.76018 5.89906 5.95252 6.07131 6.11894 6.14777 6.22852 6.31249 6.46199 6.53880 6.59200 7.13010 7.48951 7.57295 7.95701 8.16559 8.41506 8.68793 9.30125 9.83418 11.33435 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.006325 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.198526 B = 4425.922736 C = 5232.576499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.535 5.535 3 C 0.050 3.950 4 C 0.040 3.960 5 C -0.507 4.507 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.095 3.905 14 H 0.058 0.942 15 C -0.112 4.112 16 C -0.125 4.125 17 C -0.104 4.104 18 C -0.099 4.099 19 C -0.556 4.556 20 H 0.123 0.877 21 S 2.413 3.587 22 C -0.673 4.673 23 O -0.880 6.880 24 O -0.946 6.946 25 H 0.020 0.980 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.023 0.977 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.011 0.989 32 H 0.256 0.744 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -17.337 9.618 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.260 5.260 3 C -0.076 4.076 4 C 0.003 3.997 5 C -0.546 4.546 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.714 3.286 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.015 4.015 14 H 0.076 0.924 15 C -0.151 4.151 16 C -0.162 4.162 17 C -0.143 4.143 18 C -0.137 4.137 19 C -0.666 4.666 20 H 0.142 0.858 21 S 2.593 3.407 22 C -0.820 4.820 23 O -0.877 6.877 24 O -0.943 6.943 25 H 0.038 0.962 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.841 -16.609 8.897 19.054 hybrid contribution 0.526 0.562 0.991 1.255 sum 3.367 -16.046 9.887 19.146 Atomic orbital electron populations 1.22718 0.87434 1.01722 1.01490 1.62232 1.08439 1.15924 1.39420 1.22903 0.97298 0.85133 1.02289 1.18974 0.96468 0.94296 0.90008 1.21244 1.37765 0.98351 0.97287 0.93093 1.24925 0.95759 0.98009 0.95660 1.69990 1.45280 1.36448 1.01872 0.86638 0.78697 0.85325 0.77972 1.19817 1.21091 1.21218 1.21280 0.91695 0.95308 0.93212 0.92403 1.21692 0.98940 0.96211 0.98225 1.21726 0.97050 0.98364 0.99086 1.21371 0.95427 0.96783 1.00688 1.21307 0.99844 0.96111 0.96425 1.30156 1.12204 1.16395 1.07800 0.85850 1.08799 0.77411 0.77399 0.77059 1.30445 1.24896 1.16038 1.10653 1.93832 1.80519 1.74592 1.38762 1.93591 1.86194 1.58550 1.55921 0.96184 0.90341 0.90523 0.95885 0.93384 0.93681 0.97056 0.93407 0.91818 0.91021 0.89444 0.92527 0.91720 0.92658 0.92050 0.87504 0.85523 0.85601 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 7.72 60.07 0.46 0.69 16 2 N -0.54 -9.67 3.26 -234.89 -0.77 -10.43 16 3 C 0.05 1.15 3.54 -3.82 -0.01 1.14 16 4 C 0.04 1.11 4.60 -27.88 -0.13 0.99 16 5 C -0.51 -15.55 9.11 -34.44 -0.31 -15.86 16 6 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -28.25 13.29 55.43 0.74 -27.52 16 9 Si 0.89 23.03 29.54 -169.99 -5.02 18.01 16 10 H -0.27 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 C 0.10 1.38 2.17 -67.72 -0.15 1.24 16 14 H 0.06 0.89 7.80 -51.93 -0.40 0.49 16 15 C -0.11 -1.26 4.86 -26.74 -0.13 -1.39 16 16 C -0.13 -1.31 5.19 -26.74 -0.14 -1.45 16 17 C -0.10 -1.01 5.92 -26.73 -0.16 -1.17 16 18 C -0.10 -1.13 4.81 -26.73 -0.13 -1.26 16 19 C -0.56 -6.92 2.32 -26.73 -0.06 -6.98 16 20 H 0.12 1.08 8.14 -51.92 -0.42 0.66 16 21 S 2.41 37.93 3.41 -107.50 -0.37 37.57 16 22 C -0.67 -6.94 10.42 101.05 1.05 -5.88 16 23 O -0.88 -18.27 13.52 -57.83 -0.78 -19.05 16 24 O -0.95 -18.09 16.76 -57.83 -0.97 -19.06 16 25 H 0.02 0.31 8.02 -51.93 -0.42 -0.11 16 26 H 0.08 1.42 6.79 -51.93 -0.35 1.07 16 27 H 0.08 0.99 3.96 -51.93 -0.21 0.79 16 28 H 0.02 0.54 8.00 -51.93 -0.42 0.12 16 29 H 0.05 1.12 2.48 -25.38 -0.06 1.06 16 30 H 0.04 1.36 7.29 -51.93 -0.38 0.98 16 31 H 0.01 0.32 6.82 -51.93 -0.35 -0.03 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.78 6.48 -51.93 -0.34 0.45 16 35 H 0.09 1.06 5.64 -51.93 -0.29 0.77 16 36 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.53 7.06 -51.93 -0.37 0.16 16 40 H 0.11 1.54 7.34 -51.93 -0.38 1.16 16 41 H 0.13 1.04 7.21 -51.92 -0.37 0.66 16 42 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16 43 H 0.12 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 325.15 15.07 4.90 4.90 Total: -1.00 -36.93 325.15 -8.91 -45.84 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.84 Total: -1.95 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 0.20 Total: -28.31 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.03 Total: -37.95 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.75 Total: -38.11 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 16 Polarization: 37.93 SS G_CDS: -0.37 Total: 37.57 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.93 -8.91 -45.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245439713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.905 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds