Wall clock time and date at job start Tue Mar 31 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99889 * 2 1 4 4 C 1.53000 * 109.46728 * 287.40916 * 3 2 1 5 5 C 1.50704 * 109.46955 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99423 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00483 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99560 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00326 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47128 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47019 * 120.00215 * 9 7 5 12 12 H 1.48503 * 109.47024 * 240.00080 * 9 7 5 13 13 C 1.46899 * 110.99961 * 123.95297 * 2 1 3 14 14 H 1.09000 * 109.46866 * 270.23898 * 13 2 1 15 15 C 1.52993 * 109.47045 * 30.24488 * 13 2 1 16 16 C 1.52995 * 109.47338 * 59.99814 * 15 13 2 17 17 C 1.52997 * 109.47201 * 60.00325 * 16 15 13 18 18 C 1.53003 * 109.46935 * 299.99553 * 17 16 15 19 19 C 1.53000 * 109.46815 * 150.24314 * 13 2 1 20 20 H 1.09000 * 109.47111 * 179.97438 * 19 13 2 21 21 S 1.81402 * 109.47441 * 59.99739 * 19 13 2 22 22 C 1.81394 * 101.92188 * 170.42663 * 21 19 13 23 23 O 1.42098 * 108.58000 * 284.91932 * 21 19 13 24 24 O 1.42106 * 108.57464 * 55.94340 * 21 19 13 25 25 H 1.08995 * 109.47087 * 301.53870 * 1 2 3 26 26 H 1.09003 * 109.47014 * 61.53824 * 1 2 3 27 27 H 1.09001 * 109.47051 * 181.53914 * 1 2 3 28 28 H 1.08997 * 109.46807 * 47.41014 * 3 2 1 29 29 H 1.08994 * 109.46655 * 167.41084 * 3 2 1 30 30 H 1.08997 * 109.47557 * 299.99639 * 4 3 2 31 31 H 1.09003 * 109.47175 * 60.00565 * 4 3 2 32 32 H 0.97006 * 119.99732 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46787 * 179.97438 * 15 13 2 34 34 H 1.09003 * 109.47360 * 299.99201 * 15 13 2 35 35 H 1.09000 * 109.47167 * 299.99749 * 16 15 13 36 36 H 1.09010 * 109.47216 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47312 * 180.02562 * 17 16 15 38 38 H 1.08998 * 109.47855 * 60.00076 * 17 16 15 39 39 H 1.08994 * 109.47193 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47088 * 300.00365 * 18 17 16 41 41 H 1.09001 * 109.46692 * 60.00796 * 22 21 19 42 42 H 1.09004 * 109.47256 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.47738 * 300.00076 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.7753 2.0022 -1.3765 5 6 2.3147 3.4094 -1.3763 6 1 2.7695 3.8132 -0.4838 7 6 2.2286 4.1809 -2.5157 8 7 1.6753 3.6889 -3.6026 9 14 2.8980 5.9248 -2.5157 10 1 3.4665 6.2368 -1.1798 11 1 3.9602 6.0473 -3.5461 12 1 1.7997 6.8765 -2.8214 13 6 1.9955 -0.7660 1.1376 14 1 2.1216 -0.1038 1.9942 15 6 1.0149 -1.8839 1.4971 16 6 0.8378 -2.8133 0.2948 17 6 2.1896 -3.4225 -0.0824 18 6 3.1703 -2.3045 -0.4421 19 6 3.3473 -1.3751 0.7603 20 1 3.7382 -1.9431 1.6046 21 16 4.5100 -0.0496 0.3339 22 6 6.0794 -0.9514 0.2156 23 8 4.1759 0.4487 -0.9542 24 8 4.5882 0.8535 1.4283 25 1 -0.3633 0.5375 0.8758 26 1 -0.3633 0.4898 -0.9035 27 1 -0.3633 -1.0273 0.0276 28 1 1.4764 1.9599 0.7566 29 1 3.0619 1.3512 0.2240 30 1 2.2943 1.4138 -2.1330 31 1 0.7087 2.0225 -1.6004 32 1 1.6143 4.2318 -4.4042 33 1 1.4057 -2.4525 2.3409 34 1 0.0518 -1.4500 1.7660 35 1 0.4471 -2.2449 -0.5493 36 1 0.1395 -3.6101 0.5511 37 1 2.0636 -4.0842 -0.9393 38 1 2.5803 -3.9909 0.7616 39 1 4.1334 -2.7384 -0.7104 40 1 2.7796 -1.7362 -1.2862 41 1 6.0014 -1.7166 -0.5567 42 1 6.8792 -0.2568 -0.0413 43 1 6.3008 -1.4228 1.1732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245439713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:44 Heat of formation + Delta-G solvation = -72.330001 kcal Electronic energy + Delta-G solvation = -23558.270924 eV Core-core repulsion = 20344.733929 eV Total energy + Delta-G solvation = -3213.536995 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.80248 -37.84791 -37.38783 -36.43886 -34.94093 -32.60579 -31.88607 -30.49341 -29.89101 -27.43019 -25.67759 -23.93935 -22.80536 -22.08130 -20.29108 -19.61387 -18.46013 -17.97850 -17.65883 -16.65038 -16.57392 -16.41341 -15.93293 -15.64664 -15.30053 -14.56387 -14.41928 -14.27214 -14.15937 -13.95887 -13.83330 -13.37285 -13.15283 -13.07321 -13.01945 -12.85765 -12.81208 -12.74309 -12.42815 -12.37697 -12.23395 -11.93924 -11.84542 -11.49078 -11.28175 -11.17976 -11.08432 -11.03122 -10.57690 -10.47592 -9.21310 -8.16054 -6.24629 -0.81952 1.34190 1.36725 1.49998 1.99225 2.40669 2.83878 2.94695 3.15951 3.24125 3.56342 3.74610 3.94693 4.05590 4.11166 4.18018 4.28336 4.29636 4.38418 4.44200 4.52729 4.55118 4.59801 4.70940 4.83342 4.90638 4.95350 5.03484 5.09152 5.15001 5.29223 5.34696 5.39070 5.43292 5.48388 5.70932 5.80240 5.82228 6.15723 6.22484 6.36223 6.91444 7.40819 8.96716 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.006325 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.198526 B = 4425.922736 C = 5232.576499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.538 5.538 3 C 0.060 3.940 4 C 0.056 3.944 5 C -0.539 4.539 6 H 0.042 0.958 7 C 0.002 3.998 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.269 1.269 11 H -0.273 1.273 12 H -0.269 1.269 13 C 0.082 3.918 14 H 0.045 0.955 15 C -0.107 4.107 16 C -0.128 4.128 17 C -0.100 4.100 18 C -0.105 4.105 19 C -0.533 4.533 20 H 0.177 0.823 21 S 2.371 3.629 22 C -0.643 4.643 23 O -0.954 6.954 24 O -0.999 6.999 25 H 0.022 0.978 26 H 0.046 0.954 27 H 0.116 0.884 28 H 0.007 0.993 29 H 0.052 0.948 30 H 0.011 0.989 31 H -0.012 1.012 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.156 0.844 42 H 0.128 0.872 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 -20.223 11.279 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.263 5.263 3 C -0.067 4.067 4 C 0.018 3.982 5 C -0.578 4.578 6 H 0.060 0.940 7 C -0.196 4.196 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.195 1.195 13 C -0.028 4.028 14 H 0.063 0.937 15 C -0.146 4.146 16 C -0.166 4.166 17 C -0.139 4.139 18 C -0.143 4.143 19 C -0.645 4.645 20 H 0.194 0.806 21 S 2.561 3.439 22 C -0.795 4.795 23 O -0.951 6.951 24 O -0.996 6.996 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.134 0.866 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.174 0.826 42 H 0.146 0.854 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.011 -19.449 10.558 22.490 hybrid contribution 0.187 1.312 0.478 1.409 sum 4.199 -18.137 11.036 21.642 Atomic orbital electron populations 1.22787 0.86685 1.03860 0.99992 1.62098 1.09231 1.12921 1.42000 1.22541 0.97839 0.87838 0.98501 1.18668 0.94028 0.93379 0.92106 1.21603 1.38643 1.00028 0.97514 0.93983 1.25887 0.95720 1.02982 0.94993 1.70117 1.45825 1.38427 1.02535 0.85499 0.78536 0.79322 0.78324 1.19329 1.19863 1.19460 1.21555 0.93965 0.96001 0.91237 0.93672 1.21736 0.98028 0.95152 0.99642 1.21749 0.98451 0.98658 0.97697 1.21403 0.94060 0.96057 1.02351 1.21411 1.02309 0.96145 0.94432 1.29987 1.09530 1.14757 1.10263 0.80568 1.09227 0.80298 0.79233 0.75149 1.30129 1.19476 1.15821 1.14117 1.93763 1.82692 1.77633 1.40969 1.93515 1.87490 1.62218 1.56402 0.95901 0.93543 0.86601 0.97524 0.93074 0.97098 0.99412 0.92830 0.88535 0.90947 0.92069 0.89934 0.90697 0.89553 0.88527 0.91571 0.82586 0.85356 0.82228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.47 7.72 127.69 0.99 1.46 16 2 N -0.54 -20.43 3.26 -897.05 -2.92 -23.35 16 3 C 0.06 3.00 3.54 86.30 0.31 3.31 16 4 C 0.06 3.38 4.60 29.85 0.14 3.52 16 5 C -0.54 -35.20 9.11 25.60 0.23 -34.96 16 6 H 0.04 2.73 7.74 -2.91 -0.02 2.71 16 7 C 0.00 0.10 5.46 84.65 0.46 0.56 16 8 N -0.93 -61.07 13.29 21.45 0.28 -60.78 16 9 Si 0.96 48.72 29.54 68.60 2.03 50.74 16 10 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 13 C 0.08 2.31 2.17 44.91 0.10 2.40 16 14 H 0.05 1.40 7.80 -2.39 -0.02 1.38 16 15 C -0.11 -2.05 4.86 30.59 0.15 -1.90 16 16 C -0.13 -2.25 5.19 30.59 0.16 -2.09 16 17 C -0.10 -1.49 5.92 30.59 0.18 -1.31 16 18 C -0.10 -2.11 4.81 30.60 0.15 -1.96 16 19 C -0.53 -11.94 2.32 30.60 0.07 -11.87 16 20 H 0.18 2.09 8.14 -2.39 -0.02 2.07 16 21 S 2.37 75.09 3.41 -56.49 -0.19 74.90 16 22 C -0.64 -11.04 10.42 113.37 1.18 -9.86 16 23 O -0.95 -42.46 13.52 -127.37 -1.72 -44.19 16 24 O -1.00 -39.74 16.76 -127.37 -2.13 -41.88 16 25 H 0.02 0.74 8.02 -2.39 -0.02 0.72 16 26 H 0.05 1.85 6.79 -2.39 -0.02 1.83 16 27 H 0.12 2.99 3.96 -2.39 -0.01 2.98 16 28 H 0.01 0.34 8.00 -2.39 -0.02 0.32 16 29 H 0.05 2.58 2.48 -19.28 -0.05 2.53 16 30 H 0.01 0.71 7.29 -2.39 -0.02 0.69 16 31 H -0.01 -0.79 6.82 -2.39 -0.02 -0.80 16 32 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.39 6.48 -2.39 -0.02 1.37 16 35 H 0.06 1.40 5.64 -2.39 -0.01 1.39 16 36 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 1.25 7.06 -2.39 -0.02 1.23 16 40 H 0.07 1.93 7.34 -2.39 -0.02 1.91 16 41 H 0.16 1.82 7.21 -2.39 -0.02 1.81 16 42 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -89.85 325.15 0.40 -89.46 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.95 Total: 7.80 kcal Atomic # 6 Polarization: -56.81 SS G_CDS: 4.11 Total: -52.70 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -2.64 Total: -84.13 kcal Atomic # 8 Polarization: -82.21 SS G_CDS: -3.86 Total: -86.06 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.03 Total: 50.74 kcal Atomic # 16 Polarization: 75.09 SS G_CDS: -0.19 Total: 74.90 kcal Total: -89.85 0.40 -89.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245439713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.125 kcal (2) G-P(sol) polarization free energy of solvation -89.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds