Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47165 * 2 1 4 4 C 1.36751 * 120.00226 * 263.63926 * 3 2 1 5 5 H 1.07998 * 120.00383 * 183.75198 * 4 3 2 6 6 C 1.39095 * 119.99665 * 3.75258 * 4 3 2 7 7 N 1.31344 * 119.99758 * 33.64042 * 6 4 3 8 8 Si 1.86792 * 120.00161 * 213.63627 * 6 4 3 9 9 H 1.48508 * 109.47033 * 94.99311 * 8 6 4 10 10 H 1.48493 * 109.47562 * 214.99569 * 8 6 4 11 11 H 1.48503 * 109.47120 * 334.99906 * 8 6 4 12 12 C 1.34783 * 120.00412 * 83.63488 * 3 2 1 13 13 O 1.21769 * 120.00532 * 180.02562 * 12 3 2 14 14 C 1.41793 * 119.99454 * 0.02562 * 12 3 2 15 15 C 1.35153 * 119.99592 * 185.60907 * 14 12 3 16 16 C 1.50695 * 120.00380 * 8.16095 * 15 14 12 17 17 C 1.46896 * 119.99993 * 188.16036 * 15 14 12 18 18 C 1.39956 * 120.21237 * 74.99814 * 17 15 14 19 19 C 1.37752 * 119.87722 * 180.02562 * 18 17 15 20 20 C 1.38579 * 120.31812 * 359.97438 * 19 18 17 21 21 C 1.38139 * 120.44450 * 0.02647 * 20 19 18 22 22 C 1.38600 * 120.11200 * 359.97438 * 21 20 19 23 23 O 1.35686 * 120.16204 * 179.97438 * 22 21 20 24 24 C 1.42902 * 117.00066 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47527 * 300.00381 * 1 2 3 26 26 H 1.09001 * 109.47267 * 60.00108 * 1 2 3 27 27 H 1.09001 * 109.47219 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47527 * 239.99619 * 2 1 3 29 29 H 1.09007 * 109.46936 * 119.99658 * 2 1 3 30 30 H 0.97008 * 119.99733 * 179.97438 * 7 6 4 31 31 H 1.08000 * 120.00221 * 5.61097 * 14 12 3 32 32 H 1.08999 * 109.47292 * 174.56854 * 16 15 14 33 33 H 1.09006 * 109.46902 * 294.56575 * 16 15 14 34 34 H 1.08999 * 109.47192 * 54.56315 * 16 15 14 35 35 H 1.07995 * 120.06622 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.84420 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.77909 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.94702 * 179.72460 * 21 20 19 39 39 H 1.08997 * 109.47285 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.47181 * 300.00252 * 24 23 22 41 41 H 1.08998 * 109.47055 * 60.00247 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3699 1.9822 -1.1770 5 1 2.7868 2.9784 -1.1712 6 6 2.1907 1.3102 -2.3816 7 7 1.1750 0.4911 -2.5318 8 14 3.3943 1.5728 -3.7857 9 1 4.4307 0.5097 -3.7546 10 1 2.6664 1.5168 -5.0788 11 1 4.0429 2.9007 -3.6399 12 6 2.1210 2.0598 1.1600 13 8 2.5264 3.2080 1.1600 14 6 1.7568 1.4365 2.3804 15 6 1.7512 2.1501 3.5282 16 6 1.9510 3.6432 3.4882 17 6 1.5503 1.4703 4.8148 18 6 2.5848 0.7180 5.3829 19 6 2.3887 0.0829 6.5895 20 6 1.1717 0.1855 7.2443 21 6 0.1417 0.9245 6.6956 22 6 0.3192 1.5709 5.4825 23 8 -0.6921 2.2966 4.9424 24 6 -1.9159 2.3520 5.6782 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.0497 0.0228 -3.3721 31 1 1.4839 0.3916 2.3929 32 1 1.8199 4.0543 4.4892 33 1 2.9573 3.8657 3.1330 34 1 1.2206 4.0896 2.8135 35 1 3.5350 0.6356 4.8764 36 1 3.1875 -0.4971 7.0276 37 1 1.0276 -0.3157 8.1901 38 1 -0.8049 0.9953 7.2107 39 1 -2.6381 2.9630 5.1367 40 1 -2.3119 1.3440 5.8010 41 1 -1.7309 2.7917 6.6582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263901931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -10.953729 kcal Electronic energy + Delta-G solvation = -23123.919425 eV Core-core repulsion = 19777.599954 eV Total energy + Delta-G solvation = -3346.319471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.12785 -38.73894 -37.33007 -35.45401 -33.88229 -31.92041 -30.26264 -29.78840 -29.28201 -27.37487 -27.26023 -24.74870 -23.17051 -22.16270 -21.94247 -20.25229 -18.22488 -17.34225 -16.76869 -16.31562 -16.03091 -15.69473 -15.29853 -14.55997 -14.40827 -14.07317 -13.88748 -13.58161 -13.35057 -12.88808 -12.66372 -12.40730 -12.30458 -12.20322 -11.86376 -11.64962 -11.43126 -11.23339 -11.15064 -11.11315 -10.90508 -10.77262 -10.68068 -10.33636 -10.15409 -9.78162 -8.87018 -8.81146 -8.38586 -8.01254 -7.96336 -7.75085 -6.46979 -3.63924 1.26695 1.47478 2.12288 3.19066 3.27876 3.31489 3.34141 3.77283 4.15341 4.41805 4.74292 4.84602 5.00469 5.05814 5.08561 5.17797 5.18536 5.37639 5.42374 5.45656 5.65187 5.77216 5.95258 6.10954 6.23670 6.27472 6.37808 6.40560 6.51523 6.57184 6.61560 6.66260 6.77262 6.80761 6.86969 7.17978 7.21342 7.27451 7.44014 7.48591 7.70700 8.18352 8.55383 9.24659 9.49956 10.14489 10.56033 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024223 B = 0.004079 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.633091 B = 6862.706969 C = 6981.676145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.116 3.884 3 N -0.428 5.428 4 C -0.307 4.307 5 H 0.109 0.891 6 C 0.036 3.964 7 N -0.845 5.845 8 Si 0.908 3.092 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.459 3.541 13 O -0.599 6.599 14 C -0.171 4.171 15 C -0.041 4.041 16 C -0.084 4.084 17 C -0.069 4.069 18 C -0.068 4.068 19 C -0.158 4.158 20 C -0.087 4.087 21 C -0.212 4.212 22 C 0.137 3.863 23 O -0.303 6.303 24 C 0.027 3.973 25 H 0.029 0.971 26 H 0.088 0.912 27 H 0.037 0.963 28 H 0.096 0.904 29 H 0.037 0.963 30 H 0.269 0.731 31 H 0.111 0.889 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.583 -3.522 16.207 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 N -0.145 5.145 4 C -0.434 4.434 5 H 0.127 0.873 6 C -0.170 4.170 7 N -0.482 5.482 8 Si 0.734 3.266 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C 0.253 3.747 13 O -0.488 6.488 14 C -0.191 4.191 15 C -0.045 4.045 16 C -0.140 4.140 17 C -0.070 4.070 18 C -0.086 4.086 19 C -0.177 4.177 20 C -0.105 4.105 21 C -0.231 4.231 22 C 0.091 3.909 23 O -0.215 6.215 24 C -0.068 4.068 25 H 0.048 0.952 26 H 0.107 0.893 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.499 -3.003 15.807 16.466 hybrid contribution 0.082 -0.417 -0.504 0.659 sum -3.417 -3.420 15.303 16.048 Atomic orbital electron populations 1.22091 0.96558 0.99804 1.02260 1.21486 0.94589 0.84018 1.00687 1.43842 1.53541 1.11141 1.05945 1.19738 1.38371 1.02696 0.82627 0.87338 1.25204 0.96194 0.96994 0.98574 1.70192 1.23230 1.28466 1.26307 0.86200 0.81293 0.79281 0.79831 1.20385 1.21184 1.19162 1.16596 0.87107 0.86965 0.84051 1.90614 1.53226 1.17987 1.86924 1.22033 1.03628 1.00002 0.93482 1.20537 0.98039 0.95911 0.89980 1.20681 1.03886 0.90354 0.99082 1.18414 0.91497 1.01076 0.95970 1.21221 0.97932 0.94590 0.94882 1.20943 0.97785 1.02601 0.96326 1.20928 0.92844 0.97523 0.99245 1.21127 1.00980 1.04061 0.96896 1.19240 0.88092 0.91861 0.91712 1.86156 1.21154 1.66684 1.47527 1.23055 0.84810 1.01964 0.96990 0.95175 0.89339 0.94374 0.88588 0.94495 0.92090 0.87116 0.94845 0.89889 0.90951 0.85075 0.85923 0.86137 0.85646 0.88244 0.92820 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.68 37.16 0.36 -2.87 16 2 C 0.12 2.67 4.95 -4.04 -0.02 2.65 16 3 N -0.43 -11.22 2.63 -118.00 -0.31 -11.53 16 4 C -0.31 -8.58 9.38 -15.04 -0.14 -8.72 16 5 H 0.11 3.23 7.34 -52.49 -0.39 2.84 16 6 C 0.04 0.93 4.72 -17.44 -0.08 0.84 16 7 N -0.84 -21.63 9.18 55.50 0.51 -21.12 16 8 Si 0.91 20.29 29.66 -169.99 -5.04 15.25 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 C 0.46 11.77 7.29 -14.90 -0.11 11.66 16 13 O -0.60 -16.79 12.71 5.13 0.07 -16.73 16 14 C -0.17 -3.66 8.17 -39.32 -0.32 -3.98 16 15 C -0.04 -0.79 5.00 -102.22 -0.51 -1.30 16 16 C -0.08 -1.65 8.33 36.00 0.30 -1.35 16 17 C -0.07 -1.13 5.21 -104.93 -0.55 -1.67 16 18 C -0.07 -0.96 9.79 -39.12 -0.38 -1.34 16 19 C -0.16 -1.84 10.02 -39.63 -0.40 -2.23 16 20 C -0.09 -0.95 10.03 -39.49 -0.40 -1.35 16 21 C -0.21 -2.54 9.03 -39.48 -0.36 -2.90 16 22 C 0.14 2.05 6.71 -38.63 -0.26 1.79 16 23 O -0.30 -4.60 9.95 -18.76 -0.19 -4.78 16 24 C 0.03 0.27 9.81 101.05 0.99 1.26 16 25 H 0.03 0.63 7.52 -51.93 -0.39 0.24 16 26 H 0.09 2.17 6.57 -51.93 -0.34 1.82 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.10 2.33 5.79 -51.93 -0.30 2.03 16 29 H 0.04 0.76 6.38 -51.92 -0.33 0.42 16 30 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.11 2.22 6.10 -52.49 -0.32 1.90 16 32 H 0.03 0.57 7.99 -51.93 -0.42 0.15 16 33 H 0.08 1.75 6.97 -51.93 -0.36 1.39 16 34 H 0.07 1.57 7.55 -51.93 -0.39 1.17 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 41 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -30.97 336.17 -7.38 -38.35 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.61 Total: 5.01 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.87 Total: -9.51 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.20 Total: -32.65 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.12 Total: -21.51 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.04 Total: 15.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.97 -7.38 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263901931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.395 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds