Wall clock time and date at job start Tue Mar 31 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47165 * 2 1 4 4 C 1.36751 * 120.00226 * 263.63926 * 3 2 1 5 5 H 1.07998 * 120.00383 * 183.75198 * 4 3 2 6 6 C 1.39095 * 119.99665 * 3.75258 * 4 3 2 7 7 N 1.31344 * 119.99758 * 33.64042 * 6 4 3 8 8 Si 1.86792 * 120.00161 * 213.63627 * 6 4 3 9 9 H 1.48508 * 109.47033 * 94.99311 * 8 6 4 10 10 H 1.48493 * 109.47562 * 214.99569 * 8 6 4 11 11 H 1.48503 * 109.47120 * 334.99906 * 8 6 4 12 12 C 1.34783 * 120.00412 * 83.63488 * 3 2 1 13 13 O 1.21769 * 120.00532 * 180.02562 * 12 3 2 14 14 C 1.41793 * 119.99454 * 0.02562 * 12 3 2 15 15 C 1.35153 * 119.99592 * 185.60907 * 14 12 3 16 16 C 1.50695 * 120.00380 * 8.16095 * 15 14 12 17 17 C 1.46896 * 119.99993 * 188.16036 * 15 14 12 18 18 C 1.39956 * 120.21237 * 74.99814 * 17 15 14 19 19 C 1.37752 * 119.87722 * 180.02562 * 18 17 15 20 20 C 1.38579 * 120.31812 * 359.97438 * 19 18 17 21 21 C 1.38139 * 120.44450 * 0.02647 * 20 19 18 22 22 C 1.38600 * 120.11200 * 359.97438 * 21 20 19 23 23 O 1.35686 * 120.16204 * 179.97438 * 22 21 20 24 24 C 1.42902 * 117.00066 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47527 * 300.00381 * 1 2 3 26 26 H 1.09001 * 109.47267 * 60.00108 * 1 2 3 27 27 H 1.09001 * 109.47219 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47527 * 239.99619 * 2 1 3 29 29 H 1.09007 * 109.46936 * 119.99658 * 2 1 3 30 30 H 0.97008 * 119.99733 * 179.97438 * 7 6 4 31 31 H 1.08000 * 120.00221 * 5.61097 * 14 12 3 32 32 H 1.08999 * 109.47292 * 174.56854 * 16 15 14 33 33 H 1.09006 * 109.46902 * 294.56575 * 16 15 14 34 34 H 1.08999 * 109.47192 * 54.56315 * 16 15 14 35 35 H 1.07995 * 120.06622 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.84420 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.77909 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.94702 * 179.72460 * 21 20 19 39 39 H 1.08997 * 109.47285 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.47181 * 300.00252 * 24 23 22 41 41 H 1.08998 * 109.47055 * 60.00247 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3699 1.9822 -1.1770 5 1 2.7868 2.9784 -1.1712 6 6 2.1907 1.3102 -2.3816 7 7 1.1750 0.4911 -2.5318 8 14 3.3943 1.5728 -3.7857 9 1 4.4307 0.5097 -3.7546 10 1 2.6664 1.5168 -5.0788 11 1 4.0429 2.9007 -3.6399 12 6 2.1210 2.0598 1.1600 13 8 2.5264 3.2080 1.1600 14 6 1.7568 1.4365 2.3804 15 6 1.7512 2.1501 3.5282 16 6 1.9510 3.6432 3.4882 17 6 1.5503 1.4703 4.8148 18 6 2.5848 0.7180 5.3829 19 6 2.3887 0.0829 6.5895 20 6 1.1717 0.1855 7.2443 21 6 0.1417 0.9245 6.6956 22 6 0.3192 1.5709 5.4825 23 8 -0.6921 2.2966 4.9424 24 6 -1.9159 2.3520 5.6782 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.0497 0.0228 -3.3721 31 1 1.4839 0.3916 2.3929 32 1 1.8199 4.0543 4.4892 33 1 2.9573 3.8657 3.1330 34 1 1.2206 4.0896 2.8135 35 1 3.5350 0.6356 4.8764 36 1 3.1875 -0.4971 7.0276 37 1 1.0276 -0.3157 8.1901 38 1 -0.8049 0.9953 7.2107 39 1 -2.6381 2.9630 5.1367 40 1 -2.3119 1.3440 5.8010 41 1 -1.7309 2.7917 6.6582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263901931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:38 Heat of formation + Delta-G solvation = -28.324677 kcal Electronic energy + Delta-G solvation = -23124.672686 eV Core-core repulsion = 19777.599954 eV Total energy + Delta-G solvation = -3347.072732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22619 -40.55870 -38.36282 -37.29341 -35.47219 -33.91809 -31.40838 -31.16316 -30.77982 -29.11600 -28.10079 -26.63429 -24.50639 -23.92486 -22.90953 -21.79392 -19.57362 -18.77995 -18.57632 -18.15967 -17.03019 -16.65279 -16.56098 -16.35554 -15.90267 -15.67442 -15.34205 -14.79416 -14.62211 -14.58704 -14.43015 -14.01806 -13.69925 -13.60889 -13.21616 -13.10506 -12.89656 -12.78000 -12.69854 -12.52665 -12.41749 -12.14562 -12.07052 -11.97795 -11.76030 -11.64359 -10.79331 -10.19723 -9.94538 -9.77629 -9.68580 -9.05764 -8.45520 -5.73226 0.16282 0.49119 0.58961 1.38935 1.43430 1.54885 2.28865 2.41666 2.48214 2.79323 3.17287 3.20801 3.71485 3.97367 4.08424 4.13355 4.29556 4.32751 4.41124 4.46130 4.51325 4.58018 4.64556 4.73306 4.75636 4.77298 4.82561 4.88832 5.02884 5.05808 5.15529 5.33566 5.36598 5.42110 5.46053 5.56077 5.56686 5.70122 5.80880 5.89515 6.13647 6.51543 6.55910 7.22115 7.52147 8.16001 8.56713 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024223 B = 0.004079 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.633091 B = 6862.706969 C = 6981.676145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.118 3.882 3 N -0.442 5.442 4 C -0.357 4.357 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.851 5.851 8 Si 0.973 3.027 9 H -0.267 1.267 10 H -0.272 1.272 11 H -0.279 1.279 12 C 0.450 3.550 13 O -0.638 6.638 14 C -0.201 4.201 15 C -0.003 4.003 16 C -0.080 4.080 17 C -0.112 4.112 18 C -0.075 4.075 19 C -0.155 4.155 20 C -0.074 4.074 21 C -0.209 4.209 22 C 0.125 3.875 23 O -0.338 6.338 24 C 0.018 3.982 25 H 0.028 0.972 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.278 0.722 31 H 0.126 0.874 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.130 0.870 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 -5.686 18.763 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.005 4.005 3 N -0.158 5.158 4 C -0.484 4.484 5 H 0.091 0.909 6 C -0.192 4.192 7 N -0.487 5.487 8 Si 0.797 3.203 9 H -0.192 1.192 10 H -0.197 1.197 11 H -0.204 1.204 12 C 0.245 3.755 13 O -0.530 6.530 14 C -0.221 4.221 15 C -0.007 4.007 16 C -0.136 4.136 17 C -0.112 4.112 18 C -0.093 4.093 19 C -0.173 4.173 20 C -0.092 4.092 21 C -0.227 4.227 22 C 0.079 3.921 23 O -0.252 6.252 24 C -0.076 4.076 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.148 0.852 36 H 0.171 0.829 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.125 -5.203 18.363 19.526 hybrid contribution 0.191 0.284 -1.106 1.158 sum -3.934 -4.920 17.256 18.370 Atomic orbital electron populations 1.21921 0.95594 1.01238 1.00623 1.21547 0.95316 0.82533 1.01112 1.43991 1.54007 1.12233 1.05564 1.19527 1.41747 1.02673 0.84465 0.90856 1.25848 0.96840 0.96482 1.00028 1.70228 1.23091 1.28165 1.27256 0.85253 0.79135 0.78707 0.77225 1.19190 1.19725 1.20412 1.17294 0.86250 0.86685 0.85260 1.90570 1.54931 1.19781 1.87728 1.21826 1.07191 1.00833 0.92255 1.20827 0.93144 0.95398 0.91304 1.20585 1.01962 0.91334 0.99730 1.18371 0.93712 1.03839 0.95312 1.21316 0.97354 0.94598 0.96056 1.21296 0.99108 1.01785 0.95094 1.21441 0.91764 0.95882 1.00078 1.21472 1.02610 1.03023 0.95628 1.19377 0.87546 0.92487 0.92689 1.86102 1.22685 1.67044 1.49369 1.23346 0.83196 1.03346 0.97699 0.95254 0.92383 0.91270 0.89976 0.92003 0.91227 0.85632 0.92208 0.91650 0.93479 0.85225 0.82937 0.82258 0.82790 0.87452 0.91285 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 9.68 71.98 0.70 -5.20 16 2 C 0.12 5.50 4.95 86.38 0.43 5.93 16 3 N -0.44 -24.26 2.63 -645.43 -1.70 -25.96 16 4 C -0.36 -21.07 9.38 84.13 0.79 -20.28 16 5 H 0.07 4.73 7.34 -2.91 -0.02 4.71 16 6 C 0.01 0.72 4.72 84.97 0.40 1.12 16 7 N -0.85 -44.01 9.18 21.69 0.20 -43.81 16 8 Si 0.97 42.43 29.66 68.60 2.03 44.47 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.45 24.41 7.29 85.12 0.62 25.03 16 13 O -0.64 -38.44 12.71 -4.57 -0.06 -38.50 16 14 C -0.20 -8.89 8.17 22.44 0.18 -8.71 16 15 C 0.00 -0.12 5.00 -18.31 -0.09 -0.21 16 16 C -0.08 -3.29 8.33 71.23 0.59 -2.70 16 17 C -0.11 -3.56 5.21 -20.06 -0.10 -3.66 16 18 C -0.08 -1.97 9.79 22.57 0.22 -1.75 16 19 C -0.15 -2.98 10.02 22.24 0.22 -2.76 16 20 C -0.07 -1.24 10.03 22.33 0.22 -1.02 16 21 C -0.21 -4.18 9.03 22.33 0.20 -3.98 16 22 C 0.12 3.51 6.71 22.89 0.15 3.66 16 23 O -0.34 -9.93 9.95 -90.05 -0.90 -10.83 16 24 C 0.02 0.32 9.81 113.37 1.11 1.43 16 25 H 0.03 1.24 7.52 -2.39 -0.02 1.22 16 26 H 0.06 2.88 6.57 -2.39 -0.02 2.87 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.08 4.03 5.79 -2.39 -0.01 4.02 16 29 H 0.06 2.53 6.38 -2.38 -0.02 2.51 16 30 H 0.28 13.23 8.31 -92.70 -0.77 12.46 16 31 H 0.13 5.08 6.10 -2.91 -0.02 5.06 16 32 H 0.06 2.09 7.99 -2.39 -0.02 2.07 16 33 H 0.06 2.93 6.97 -2.38 -0.02 2.91 16 34 H 0.05 2.17 7.55 -2.39 -0.02 2.15 16 35 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.15 2.14 6.30 -2.91 -0.02 2.12 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 41 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 Total: -1.00 -71.92 336.17 6.26 -65.66 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.03 Total: 22.07 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 5.65 Total: -13.10 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -1.50 Total: -69.76 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -0.95 Total: -49.33 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.92 6.26 -65.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263901931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.331 kcal (2) G-P(sol) polarization free energy of solvation -71.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds