Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47404 * 2 1 4 4 C 1.46500 * 119.99625 * 269.99879 * 3 2 1 5 5 C 1.50705 * 109.46965 * 269.99627 * 4 3 2 6 6 H 1.07997 * 119.99988 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00133 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99450 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00230 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47024 * 59.99792 * 9 7 5 11 11 H 1.48498 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46978 * 300.00255 * 9 7 5 13 13 C 1.34774 * 120.00061 * 89.99944 * 3 2 1 14 14 O 1.21281 * 119.99668 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00357 * 359.97438 * 13 3 2 16 16 C 1.50694 * 109.47184 * 180.02562 * 15 13 3 17 17 C 1.38291 * 120.11946 * 90.00193 * 16 15 13 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 1.09000 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46878 * 300.00664 * 1 2 3 27 27 H 1.09005 * 109.46758 * 60.00141 * 1 2 3 28 28 H 1.09001 * 109.47178 * 239.98979 * 2 1 3 29 29 H 1.09005 * 109.46758 * 119.99859 * 2 1 3 30 30 H 1.08996 * 109.47526 * 29.99669 * 4 3 2 31 31 H 1.09003 * 109.47255 * 150.00501 * 4 3 2 32 32 H 0.97003 * 119.99468 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46689 * 59.99897 * 15 13 3 34 34 H 1.09006 * 109.46910 * 300.00525 * 15 13 3 35 35 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 36 36 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 38 38 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 39 39 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 40 40 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 41 41 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1493 2.3893 -2.8780 8 7 3.3493 3.1253 -3.6182 9 14 5.9133 2.0952 -3.4175 10 1 6.1404 0.6383 -3.5945 11 1 6.1610 2.7952 -4.7035 12 1 6.8412 2.6186 -2.3829 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9913 1.3064 2.4723 16 6 2.3173 2.2299 3.6176 17 6 1.3396 3.0539 4.1446 18 6 1.6336 3.9036 5.1905 19 6 2.9194 3.9399 5.7248 20 6 3.8913 3.1017 5.1913 21 6 3.5958 2.2567 4.1456 22 6 5.1671 3.3495 5.9727 23 6 4.6390 4.1004 7.2181 24 8 3.4226 4.6974 6.7377 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5819 1.6876 -2.0284 31 1 2.0958 3.1409 -1.1385 32 1 3.6752 3.5151 -4.4445 33 1 2.6211 0.4186 2.5302 34 1 0.9432 1.0126 2.5298 35 1 0.3405 3.0317 3.7350 36 1 0.8641 4.5435 5.5964 37 1 4.3626 1.6152 3.7368 38 1 5.8569 3.9737 5.4048 39 1 5.6392 2.4088 6.2561 40 1 4.4327 3.4036 8.0305 41 1 5.3476 4.8646 7.5374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264009637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = -46.177489 kcal Electronic energy + Delta-G solvation = -22669.153450 eV Core-core repulsion = 19321.306562 eV Total energy + Delta-G solvation = -3347.846888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03963 -39.20140 -37.37145 -35.19841 -32.89118 -32.67555 -31.82289 -30.05510 -29.23495 -27.95009 -26.24835 -23.51342 -23.00166 -22.68820 -21.87585 -20.89201 -18.25379 -17.36819 -16.71970 -16.52055 -16.21368 -16.18929 -15.55159 -14.93726 -14.43921 -14.07010 -13.93320 -13.46761 -13.33995 -13.19832 -13.07855 -12.94796 -12.46850 -12.39216 -12.01237 -11.84588 -11.74244 -11.55721 -11.43095 -11.11394 -10.92394 -10.76800 -10.73691 -10.61471 -10.47791 -10.10854 -9.62666 -8.89216 -8.75096 -8.41338 -7.90735 -7.62152 -6.02283 -4.06878 1.39938 1.48875 3.25168 3.32261 3.36986 3.38927 3.49541 3.69347 4.10661 4.37889 4.46594 4.52754 4.82831 4.93491 4.96815 5.19092 5.23326 5.25964 5.32261 5.36533 5.47416 5.49191 5.62151 5.65324 5.68051 5.72788 5.77150 5.83412 6.05374 6.17649 6.25151 6.34225 6.46476 6.50581 6.66393 6.73804 7.10367 7.25458 7.48144 7.58968 7.94492 8.26377 8.47300 8.92908 9.15590 9.58126 11.05768 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.004146 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.282362 B = 6752.656413 C = 7808.881162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.533 6.533 15 C -0.100 4.100 16 C -0.080 4.080 17 C -0.072 4.072 18 C -0.136 4.136 19 C 0.095 3.905 20 C -0.174 4.174 21 C -0.054 4.054 22 C -0.110 4.110 23 C 0.053 3.947 24 O -0.308 6.308 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -5.621 18.679 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.409 6.409 15 C -0.140 4.140 16 C -0.080 4.080 17 C -0.090 4.090 18 C -0.154 4.154 19 C 0.050 3.950 20 C -0.175 4.175 21 C -0.072 4.072 22 C -0.147 4.147 23 C -0.022 4.022 24 O -0.223 6.223 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.596 -4.690 18.579 19.337 hybrid contribution 1.158 -0.280 -0.542 1.308 sum -1.439 -4.970 18.037 18.765 Atomic orbital electron populations 1.22227 0.96872 1.01362 1.02316 1.21411 0.93465 0.84312 1.02629 1.48264 1.63987 1.13222 1.07703 1.19239 0.96138 0.93633 0.78188 1.21407 0.96996 1.31880 1.06201 0.92589 1.24931 0.97780 0.94951 0.96423 1.69925 1.35706 1.33446 1.14335 0.86575 0.84903 0.78212 0.77823 1.20261 1.21173 1.20239 1.20201 0.78827 0.87043 0.84785 1.90697 1.45193 1.17966 1.87090 1.20720 1.03551 0.98161 0.91579 1.19227 0.93569 0.98750 0.96474 1.20683 0.99439 0.94307 0.94534 1.20134 0.93206 1.02420 0.99672 1.19532 0.93721 0.91841 0.89862 1.20632 0.95003 1.01412 1.00425 1.20092 0.95897 0.97452 0.93782 1.21775 0.96051 1.01675 0.95168 1.23780 0.84747 0.97464 0.96251 1.86790 1.39668 1.46961 1.48850 0.92214 0.93050 0.92075 0.90044 0.91721 0.95108 0.93977 0.92698 0.88664 0.88629 0.85344 0.85658 0.85958 0.89151 0.89244 0.90805 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.63 16 3 N -0.60 -12.54 2.46 -175.06 -0.43 -12.97 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.51 10.45 7.67 -10.99 -0.08 10.37 16 14 O -0.53 -13.67 15.61 5.56 0.09 -13.59 16 15 C -0.10 -1.47 4.39 -29.04 -0.13 -1.60 16 16 C -0.08 -1.22 4.38 -104.56 -0.46 -1.68 16 17 C -0.07 -1.03 9.68 -39.68 -0.38 -1.41 16 18 C -0.14 -1.92 10.06 -39.30 -0.40 -2.32 16 19 C 0.10 1.41 7.04 -38.92 -0.27 1.13 16 20 C -0.17 -2.48 6.27 -104.09 -0.65 -3.13 16 21 C -0.05 -0.82 9.69 -39.75 -0.39 -1.20 16 22 C -0.11 -1.16 7.11 -26.51 -0.19 -1.35 16 23 C 0.05 0.50 8.01 38.06 0.30 0.81 16 24 O -0.31 -4.23 11.10 -20.14 -0.22 -4.45 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.10 1.20 7.35 -51.93 -0.38 0.82 16 34 H 0.10 1.14 7.13 -51.93 -0.37 0.77 16 35 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -35.04 344.65 -8.43 -43.47 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.03 Total: -0.78 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.74 Total: -7.77 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.31 Total: -39.06 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.14 Total: -18.04 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.04 -8.43 -43.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264009637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.711 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds