Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47404 * 2 1 4 4 C 1.46500 * 119.99625 * 269.99879 * 3 2 1 5 5 C 1.50705 * 109.46965 * 269.99627 * 4 3 2 6 6 H 1.07997 * 119.99988 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00133 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99450 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00230 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47024 * 59.99792 * 9 7 5 11 11 H 1.48498 * 109.47381 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46978 * 300.00255 * 9 7 5 13 13 C 1.34774 * 120.00061 * 89.99944 * 3 2 1 14 14 O 1.21281 * 119.99668 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00357 * 359.97438 * 13 3 2 16 16 C 1.50694 * 109.47184 * 180.02562 * 15 13 3 17 17 C 1.38291 * 120.11946 * 90.00193 * 16 15 13 18 18 C 1.37929 * 120.35446 * 180.17130 * 17 16 15 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 H 1.09000 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46878 * 300.00664 * 1 2 3 27 27 H 1.09005 * 109.46758 * 60.00141 * 1 2 3 28 28 H 1.09001 * 109.47178 * 239.98979 * 2 1 3 29 29 H 1.09005 * 109.46758 * 119.99859 * 2 1 3 30 30 H 1.08996 * 109.47526 * 29.99669 * 4 3 2 31 31 H 1.09003 * 109.47255 * 150.00501 * 4 3 2 32 32 H 0.97003 * 119.99468 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46689 * 59.99897 * 15 13 3 34 34 H 1.09006 * 109.46910 * 300.00525 * 15 13 3 35 35 H 1.08007 * 119.81963 * 0.19443 * 17 16 15 36 36 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 37 37 H 1.08003 * 119.98294 * 179.61345 * 21 20 19 38 38 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 39 39 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 40 40 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 41 41 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1493 2.3893 -2.8780 8 7 3.3493 3.1253 -3.6182 9 14 5.9133 2.0952 -3.4175 10 1 6.1404 0.6383 -3.5945 11 1 6.1610 2.7952 -4.7035 12 1 6.8412 2.6186 -2.3829 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9913 1.3064 2.4723 16 6 2.3173 2.2299 3.6176 17 6 1.3396 3.0539 4.1446 18 6 1.6336 3.9036 5.1905 19 6 2.9194 3.9399 5.7248 20 6 3.8913 3.1017 5.1913 21 6 3.5958 2.2567 4.1456 22 6 5.1671 3.3495 5.9727 23 6 4.6390 4.1004 7.2181 24 8 3.4226 4.6974 6.7377 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5819 1.6876 -2.0284 31 1 2.0958 3.1409 -1.1385 32 1 3.6752 3.5151 -4.4445 33 1 2.6211 0.4186 2.5302 34 1 0.9432 1.0126 2.5298 35 1 0.3405 3.0317 3.7350 36 1 0.8641 4.5435 5.5964 37 1 4.3626 1.6152 3.7368 38 1 5.8569 3.9737 5.4048 39 1 5.6392 2.4088 6.2561 40 1 4.4327 3.4036 8.0305 41 1 5.3476 4.8646 7.5374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264009637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = -67.956551 kcal Electronic energy + Delta-G solvation = -22670.097861 eV Core-core repulsion = 19321.306562 eV Total energy + Delta-G solvation = -3348.791299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02897 -40.73759 -38.50833 -36.85472 -34.93537 -33.65127 -33.07997 -31.53308 -30.18526 -29.52242 -27.83012 -24.97773 -24.32098 -24.02782 -22.89771 -22.06586 -19.80265 -18.61284 -18.34854 -17.85057 -17.70975 -17.25328 -16.96233 -16.35847 -16.20620 -15.43572 -15.05770 -14.70872 -14.64160 -14.45262 -14.25193 -14.12088 -13.88226 -13.58637 -13.35689 -13.24787 -13.12825 -12.84517 -12.69351 -12.64427 -12.57920 -12.34208 -12.13439 -11.84375 -11.73215 -11.70331 -11.63186 -10.63952 -10.56353 -9.82234 -9.39501 -8.98454 -8.21750 -6.36747 0.31602 0.39365 1.35481 1.40067 1.47254 1.90789 2.30564 2.34841 2.44469 2.80487 3.07555 3.47640 3.65541 3.80862 3.93715 3.99320 4.16322 4.20646 4.22242 4.40358 4.43022 4.49344 4.62637 4.64099 4.67589 4.71992 4.86825 4.88518 4.98776 5.03675 5.08968 5.15725 5.22925 5.29182 5.40187 5.44348 5.59364 5.62061 5.66532 5.89479 6.08149 6.23707 6.71509 6.86099 7.29660 7.55711 8.85030 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016670 B = 0.004146 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.282362 B = 6752.656413 C = 7808.881162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.497 3.503 14 O -0.595 6.595 15 C -0.083 4.083 16 C -0.099 4.099 17 C -0.080 4.080 18 C -0.148 4.148 19 C 0.080 3.920 20 C -0.188 4.188 21 C -0.071 4.071 22 C -0.109 4.109 23 C 0.049 3.951 24 O -0.326 6.326 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.020 0.980 31 H -0.008 1.008 32 H 0.267 0.733 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -7.644 20.348 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.286 3.714 14 O -0.476 6.476 15 C -0.122 4.122 16 C -0.100 4.100 17 C -0.098 4.098 18 C -0.166 4.166 19 C 0.035 3.965 20 C -0.188 4.188 21 C -0.089 4.089 22 C -0.146 4.146 23 C -0.025 4.025 24 O -0.241 6.241 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.038 0.962 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.146 0.854 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.953 -6.773 20.269 21.460 hybrid contribution 0.928 0.386 -1.015 1.428 sum -1.025 -6.387 19.255 20.312 Atomic orbital electron populations 1.22167 0.94618 1.03512 1.01718 1.21774 0.95309 0.81264 1.04036 1.48299 1.64035 1.15167 1.06092 1.18651 0.95170 0.91368 0.80646 1.21711 0.97973 1.31962 1.06479 0.92774 1.25874 1.02393 0.94494 0.96475 1.70055 1.37848 1.34268 1.14785 0.85483 0.79004 0.79121 0.77301 1.18230 1.20390 1.20454 1.21285 0.77174 0.86535 0.86367 1.90663 1.47909 1.20892 1.88099 1.20683 1.06240 0.97996 0.87252 1.19415 0.94065 0.99574 0.96902 1.20951 1.00220 0.94073 0.94554 1.20428 0.93790 1.02659 0.99751 1.19823 0.94204 0.92068 0.90398 1.21055 0.96655 1.00817 1.00316 1.20323 0.96155 0.98119 0.94342 1.21889 0.94640 1.02993 0.95066 1.24112 0.83686 0.98548 0.96142 1.86759 1.41207 1.47551 1.48595 0.88605 0.91763 0.94611 0.91232 0.87699 0.96189 0.98947 0.92465 0.85862 0.85185 0.83725 0.84138 0.85379 0.89416 0.86821 0.88717 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.08 16 2 C 0.10 2.88 5.93 86.38 0.51 3.39 16 3 N -0.60 -25.45 2.46 -826.15 -2.03 -27.48 16 4 C 0.26 14.45 5.16 85.63 0.44 14.89 16 5 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 9 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 C 0.50 20.60 7.67 87.66 0.67 21.27 16 14 O -0.59 -31.69 15.61 -3.03 -0.05 -31.74 16 15 C -0.08 -2.24 4.39 29.10 0.13 -2.11 16 16 C -0.10 -2.93 4.38 -19.83 -0.09 -3.02 16 17 C -0.08 -2.24 9.68 22.21 0.21 -2.03 16 18 C -0.15 -4.12 10.06 22.45 0.23 -3.89 16 19 C 0.08 2.32 7.04 22.70 0.16 2.48 16 20 C -0.19 -5.21 6.27 -19.52 -0.12 -5.33 16 21 C -0.07 -2.10 9.69 22.16 0.21 -1.88 16 22 C -0.11 -2.13 7.11 30.74 0.22 -1.91 16 23 C 0.05 0.83 8.01 72.57 0.58 1.41 16 24 O -0.33 -8.61 11.10 -94.99 -1.05 -9.66 16 25 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.35 7.22 -2.39 -0.02 1.34 16 27 H 0.03 1.01 8.14 -2.38 -0.02 1.00 16 28 H 0.07 2.20 8.07 -2.39 -0.02 2.19 16 29 H 0.10 2.24 6.44 -2.38 -0.02 2.23 16 30 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 31 H -0.01 -0.49 7.42 -2.39 -0.02 -0.50 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.12 2.66 7.35 -2.39 -0.02 2.64 16 34 H 0.13 2.62 7.13 -2.38 -0.02 2.61 16 35 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 36 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -80.66 344.65 4.80 -75.86 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.02 Total: 13.03 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 4.60 Total: -10.46 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -1.74 Total: -84.47 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.10 Total: -41.40 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -80.66 4.80 -75.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264009637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.905 kcal (2) G-P(sol) polarization free energy of solvation -80.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds