Wall clock time and date at job start Tue Mar 31 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 C 1.50700 * 109.47405 * 270.28028 * 8 7 6 10 10 O 1.21277 * 119.99867 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00060 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00215 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47381 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47298 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47477 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99744 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00264 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00118 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47013 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47542 * 119.99559 * 19 17 15 22 22 H 1.48497 * 109.47073 * 239.99886 * 19 17 15 23 23 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 24 24 C 1.37892 * 120.16928 * 359.71584 * 23 7 6 25 25 H 1.09005 * 109.46530 * 269.99786 * 1 2 3 26 26 H 1.09000 * 109.47058 * 29.99503 * 1 2 3 27 27 H 1.08998 * 109.46815 * 149.99860 * 1 2 3 28 28 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 29 29 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 30 30 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 31 31 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 32 32 H 0.97007 * 120.00114 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.46908 * 299.99644 * 12 11 9 34 34 H 1.08998 * 109.47321 * 59.99396 * 12 11 9 35 35 H 1.08997 * 109.47274 * 299.99990 * 13 12 11 36 36 H 1.09007 * 109.47029 * 59.99968 * 13 12 11 37 37 H 1.09004 * 109.46947 * 300.00629 * 14 13 12 38 38 H 1.09007 * 109.46814 * 60.00194 * 14 13 12 39 39 H 0.96992 * 120.00089 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.91764 * 179.69813 * 23 7 6 41 41 H 1.08001 * 120.08323 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 6 4.6331 -5.4121 -1.4246 10 8 4.2390 -4.7289 -2.3459 11 7 5.2953 -6.5597 -1.6718 12 6 5.5405 -6.9810 -3.0533 13 6 6.3054 -8.3060 -3.0543 14 6 6.5608 -8.7464 -4.4972 15 6 7.3136 -10.0518 -4.4982 16 1 7.5833 -10.5204 -3.5633 17 6 7.6590 -10.6475 -5.6928 18 7 7.3311 -10.0767 -6.8313 19 14 8.5916 -12.2660 -5.6940 20 1 8.8378 -12.6965 -4.2942 21 1 7.7889 -13.2993 -6.3962 22 1 9.8900 -12.0886 -6.3925 23 6 2.2439 -3.6777 -0.0029 24 6 1.5473 -2.4877 -0.0019 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 4.1856 -0.3457 0.0012 29 1 5.4036 -2.4818 -0.0110 30 1 5.3337 -4.8486 0.5109 31 1 3.7922 -5.7387 0.5095 32 1 5.6103 -7.1063 -0.9349 33 1 4.5884 -7.1102 -3.5680 34 1 6.1303 -6.2210 -3.5657 35 1 7.2574 -8.1764 -2.5397 36 1 5.7158 -9.0663 -2.5418 37 1 5.6085 -8.8760 -5.0115 38 1 7.1502 -7.9862 -5.0100 39 1 7.5737 -10.4959 -7.6716 40 1 1.7082 -4.6154 -0.0043 41 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264023565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:31 Heat of formation + Delta-G solvation = -73.467726 kcal Electronic energy + Delta-G solvation = -21046.752494 eV Core-core repulsion = 17697.722212 eV Total energy + Delta-G solvation = -3349.030282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44587 -39.58616 -38.29687 -35.46815 -33.45998 -33.27956 -31.65692 -31.24587 -30.29788 -28.18106 -26.43042 -23.63181 -22.88323 -22.54032 -20.79224 -20.19460 -19.84038 -17.38336 -16.92769 -16.50058 -16.22739 -15.85368 -15.38452 -15.30244 -15.07759 -14.58836 -14.47737 -14.22981 -13.96482 -13.75861 -13.66900 -12.79152 -12.56755 -12.35946 -12.34709 -12.30191 -12.02014 -11.80390 -11.67600 -11.27219 -10.94745 -10.77804 -10.60078 -10.06730 -9.98513 -9.91192 -9.46230 -9.23674 -9.15926 -8.98920 -8.83822 -8.40617 -6.04866 -4.08146 0.35819 1.14473 2.09144 2.70115 3.26168 3.27678 3.35375 3.38660 3.65166 3.73894 4.34537 4.41642 4.43071 4.65297 4.69957 4.86635 4.91177 5.01288 5.03596 5.13657 5.21878 5.29249 5.30981 5.51246 5.60362 5.69269 5.72671 5.73825 5.98376 6.11592 6.11876 6.25164 6.42593 6.55193 6.60824 6.78137 6.96058 7.20704 7.60225 7.63763 7.72208 7.93737 8.31370 8.35723 8.98803 9.56279 11.06439 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.045329 B = 0.002060 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.551472 B =13589.708880 C =13730.924630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.396 3.604 3 O -0.463 6.463 4 C -0.179 4.179 5 C -0.059 4.059 6 C -0.118 4.118 7 C -0.027 4.027 8 C -0.111 4.111 9 C 0.508 3.492 10 O -0.536 6.536 11 N -0.726 5.726 12 C 0.116 3.884 13 C -0.121 4.121 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.119 4.119 24 C -0.071 4.071 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.399 0.601 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.128 0.872 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.134 14.631 18.921 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.275 3.725 3 O -0.339 6.339 4 C -0.180 4.180 5 C -0.077 4.077 6 C -0.136 4.136 7 C -0.028 4.028 8 C -0.151 4.151 9 C 0.293 3.707 10 O -0.412 6.412 11 N -0.377 5.377 12 C -0.006 4.006 13 C -0.159 4.159 14 C -0.015 4.015 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.137 4.137 24 C -0.089 4.089 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.090 15.649 18.036 26.765 hybrid contribution 0.693 -1.395 0.140 1.564 sum -11.397 14.254 18.176 25.757 Atomic orbital electron populations 1.22241 0.93797 1.05045 1.04717 1.22527 0.91686 0.87628 0.70646 1.90536 1.72196 1.34406 1.36761 1.20482 0.94654 0.94698 1.08136 1.21358 0.93168 0.98553 0.94600 1.21001 1.00271 0.91576 1.00754 1.19612 0.93743 0.93944 0.95462 1.20808 1.02474 0.95986 0.95829 1.20376 0.78358 0.81239 0.90705 1.90743 1.50610 1.53638 1.46234 1.46219 1.57756 1.23562 1.10211 1.21650 1.00543 0.97679 0.80756 1.21888 0.98339 0.93256 1.02369 1.19039 0.97208 0.96283 0.88940 1.21235 1.36083 1.06409 0.92341 0.92578 1.25042 0.96093 0.97734 0.95681 1.69972 1.46782 1.39183 0.97290 0.86519 0.79632 0.83676 0.78051 1.19759 1.20989 1.20993 1.20984 0.93479 0.98375 1.00877 1.21403 0.99978 0.91348 0.96198 0.88451 0.89408 0.89395 0.84973 0.85405 0.87626 0.87600 0.76753 0.91778 0.91792 0.92713 0.92714 0.96278 0.96278 0.92951 0.85367 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.13 9.76 36.00 0.35 -0.78 16 2 C 0.40 3.84 7.23 -30.69 -0.22 3.62 16 3 O -0.46 -6.05 17.09 5.57 0.10 -5.95 16 4 C -0.18 -1.78 5.87 -105.06 -0.62 -2.40 16 5 C -0.06 -0.63 9.60 -39.11 -0.38 -1.00 16 6 C -0.12 -1.22 9.68 -39.65 -0.38 -1.60 16 7 C -0.03 -0.27 4.38 -104.50 -0.46 -0.73 16 8 C -0.11 -0.95 5.82 -29.04 -0.17 -1.12 16 9 C 0.51 6.75 7.82 -10.99 -0.09 6.67 16 10 O -0.54 -9.60 16.03 5.56 0.09 -9.51 16 11 N -0.73 -9.45 5.56 -60.30 -0.33 -9.79 16 12 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 13 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.12 -1.09 9.68 -39.64 -0.38 -1.48 16 24 C -0.07 -0.60 9.37 -39.10 -0.37 -0.96 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.36 6.47 -51.93 -0.34 0.02 16 28 H 0.13 1.36 7.65 -52.49 -0.40 0.96 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.11 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.11 0.64 8.08 -51.92 -0.42 0.22 16 32 H 0.40 3.93 8.47 -40.82 -0.35 3.59 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.13 0.70 6.36 -52.49 -0.33 0.37 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -35.11 354.92 -8.53 -43.64 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.03 Total: -1.02 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.42 Total: -13.08 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.40 Total: -35.69 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.18 Total: -15.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.11 -8.53 -43.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.825 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds