Wall clock time and date at job start Tue Mar 31 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21262 * 120.00004 * 2 1 4 4 C 1.47168 * 120.00520 * 180.02562 * 2 1 3 5 5 C 1.39851 * 120.17582 * 180.02562 * 4 2 1 6 6 C 1.37885 * 119.82281 * 180.29957 * 5 4 2 7 7 C 1.38402 * 120.17407 * 359.43610 * 6 5 4 8 8 C 1.50696 * 119.82806 * 180.28065 * 7 6 5 9 9 C 1.50700 * 109.47405 * 270.28028 * 8 7 6 10 10 O 1.21277 * 119.99867 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00060 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00215 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47381 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47298 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47477 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99744 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00264 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00118 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47013 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47542 * 119.99559 * 19 17 15 22 22 H 1.48497 * 109.47073 * 239.99886 * 19 17 15 23 23 C 1.38410 * 120.34833 * 0.56494 * 7 6 5 24 24 C 1.37892 * 120.16928 * 359.71584 * 23 7 6 25 25 H 1.09005 * 109.46530 * 269.99786 * 1 2 3 26 26 H 1.09000 * 109.47058 * 29.99503 * 1 2 3 27 27 H 1.08998 * 109.46815 * 149.99860 * 1 2 3 28 28 H 1.08002 * 120.08457 * 0.02562 * 5 4 2 29 29 H 1.07998 * 119.91348 * 179.72125 * 6 5 4 30 30 H 1.09002 * 109.46875 * 30.28498 * 8 7 6 31 31 H 1.09007 * 109.47167 * 150.27884 * 8 7 6 32 32 H 0.97007 * 120.00114 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.46908 * 299.99644 * 12 11 9 34 34 H 1.08998 * 109.47321 * 59.99396 * 12 11 9 35 35 H 1.08997 * 109.47274 * 299.99990 * 13 12 11 36 36 H 1.09007 * 109.47029 * 59.99968 * 13 12 11 37 37 H 1.09004 * 109.46947 * 300.00629 * 14 13 12 38 38 H 1.09007 * 109.46814 * 60.00194 * 14 13 12 39 39 H 0.96992 * 120.00089 * 180.02562 * 18 17 15 40 40 H 1.07999 * 119.91764 * 179.69813 * 23 7 6 41 41 H 1.08001 * 120.08323 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2429 -1.2744 -0.0006 5 6 3.6414 -1.2786 0.0000 6 6 4.3236 -2.4769 -0.0068 7 6 3.6280 -3.6734 -0.0024 8 6 4.3815 -4.9785 -0.0035 9 6 4.6331 -5.4121 -1.4246 10 8 4.2390 -4.7289 -2.3459 11 7 5.2953 -6.5597 -1.6718 12 6 5.5405 -6.9810 -3.0533 13 6 6.3054 -8.3060 -3.0543 14 6 6.5608 -8.7464 -4.4972 15 6 7.3136 -10.0518 -4.4982 16 1 7.5833 -10.5204 -3.5633 17 6 7.6590 -10.6475 -5.6928 18 7 7.3311 -10.0767 -6.8313 19 14 8.5916 -12.2660 -5.6940 20 1 8.8378 -12.6965 -4.2942 21 1 7.7889 -13.2993 -6.3962 22 1 9.8900 -12.0886 -6.3925 23 6 2.2439 -3.6777 -0.0029 24 6 1.5473 -2.4877 -0.0019 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 4.1856 -0.3457 0.0012 29 1 5.4036 -2.4818 -0.0110 30 1 5.3337 -4.8486 0.5109 31 1 3.7922 -5.7387 0.5095 32 1 5.6103 -7.1063 -0.9349 33 1 4.5884 -7.1102 -3.5680 34 1 6.1303 -6.2210 -3.5657 35 1 7.2574 -8.1764 -2.5397 36 1 5.7158 -9.0663 -2.5418 37 1 5.6085 -8.8760 -5.0115 38 1 7.1502 -7.9862 -5.0100 39 1 7.5737 -10.4959 -7.6716 40 1 1.7082 -4.6154 -0.0043 41 1 0.4673 -2.4926 -0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264023565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:31 Heat of formation + Delta-G solvation = -95.982722 kcal Electronic energy + Delta-G solvation = -21047.728818 eV Core-core repulsion = 17697.722212 eV Total energy + Delta-G solvation = -3350.006605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25713 -40.57068 -39.12989 -36.94072 -35.17642 -34.18695 -33.01628 -32.25194 -30.98853 -29.24238 -27.90151 -25.10594 -23.73069 -23.48777 -22.29858 -21.30171 -20.69753 -18.58415 -18.10254 -17.90099 -17.04792 -16.98286 -16.51319 -16.47645 -16.03827 -15.91207 -15.59580 -15.10470 -14.92234 -14.78382 -14.49052 -14.25308 -13.75691 -13.60891 -13.42587 -13.03410 -12.97882 -12.91280 -12.73959 -12.66665 -12.54222 -12.32884 -11.94154 -11.67031 -11.59159 -11.22677 -10.90536 -10.80272 -10.56707 -10.06857 -9.94348 -9.77861 -8.20013 -6.31530 -0.38134 0.43499 1.35971 1.41835 1.42038 1.55193 1.67585 2.26648 2.42781 2.86217 3.09998 3.13886 3.62873 3.79259 3.99296 4.01565 4.12737 4.21738 4.23242 4.31024 4.39777 4.56190 4.57025 4.60141 4.66285 4.68901 4.90065 4.95196 5.02436 5.06674 5.10453 5.17789 5.29222 5.42792 5.46145 5.53906 5.54168 5.70716 5.84231 5.92064 6.21846 6.50187 6.62887 6.86795 7.31581 7.38354 8.92294 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.045329 B = 0.002060 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.551472 B =13589.708880 C =13730.924630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.394 3.606 3 O -0.509 6.509 4 C -0.196 4.196 5 C -0.081 4.081 6 C -0.132 4.132 7 C -0.041 4.041 8 C -0.098 4.098 9 C 0.507 3.493 10 O -0.587 6.587 11 N -0.715 5.715 12 C 0.130 3.870 13 C -0.101 4.101 14 C 0.021 3.979 15 C -0.539 4.539 16 H 0.068 0.932 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.128 4.128 24 C -0.065 4.065 25 H 0.120 0.880 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.418 0.582 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.070 0.930 37 H -0.009 1.009 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.150 0.850 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.925 12.893 21.319 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.276 3.724 3 O -0.389 6.389 4 C -0.197 4.197 5 C -0.099 4.099 6 C -0.149 4.149 7 C -0.042 4.042 8 C -0.138 4.138 9 C 0.295 3.705 10 O -0.467 6.467 11 N -0.367 5.367 12 C 0.006 3.994 13 C -0.139 4.139 14 C -0.016 4.016 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.180 1.180 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.146 4.146 24 C -0.082 4.082 25 H 0.138 0.862 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.159 0.841 32 H 0.256 0.744 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.010 0.990 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.168 0.832 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.881 13.885 20.493 27.905 hybrid contribution 0.913 -0.826 -0.622 1.379 sum -11.968 13.059 19.870 26.620 Atomic orbital electron populations 1.22281 0.90287 1.06155 1.06440 1.23166 0.93607 0.86775 0.68829 1.90519 1.73429 1.35719 1.39223 1.20737 0.94558 0.95786 1.08596 1.21472 0.94095 0.98566 0.95794 1.21179 1.00849 0.91809 1.01112 1.19879 0.94516 0.94272 0.95510 1.20840 1.04436 0.96015 0.92466 1.21209 0.76845 0.80190 0.92270 1.90730 1.52607 1.55051 1.48353 1.45977 1.57732 1.24045 1.08949 1.21178 0.99029 0.96207 0.83012 1.21589 0.99601 0.94412 0.98293 1.18966 0.95043 0.95126 0.92490 1.21722 1.35898 1.07204 0.92874 0.91377 1.26052 0.97168 1.01806 0.95315 1.70119 1.48273 1.41173 0.98070 0.85350 0.77917 0.78683 0.78788 1.18047 1.20613 1.20715 1.21374 0.93434 0.99573 1.00195 1.21779 1.01691 0.90310 0.94452 0.86162 0.89311 0.87238 0.85977 0.84748 0.84846 0.84052 0.74449 0.93433 0.93753 0.91312 0.91117 0.99038 0.99195 0.92847 0.83209 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 9.76 71.24 0.69 -1.10 16 2 C 0.39 7.55 7.23 28.03 0.20 7.75 16 3 O -0.51 -13.92 17.09 -2.97 -0.05 -13.97 16 4 C -0.20 -3.82 5.87 -20.15 -0.12 -3.94 16 5 C -0.08 -1.80 9.60 22.58 0.22 -1.58 16 6 C -0.13 -2.68 9.68 22.23 0.22 -2.46 16 7 C -0.04 -0.75 4.38 -19.79 -0.09 -0.84 16 8 C -0.10 -1.37 5.82 29.10 0.17 -1.20 16 9 C 0.51 12.58 7.82 87.66 0.69 13.26 16 10 O -0.59 -20.94 16.03 -3.02 -0.05 -20.99 16 11 N -0.71 -17.15 5.56 -463.08 -2.57 -19.72 16 12 C 0.13 4.38 5.67 86.38 0.49 4.87 16 13 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 14 C 0.02 1.10 4.97 29.85 0.15 1.25 16 15 C -0.54 -29.67 9.11 25.60 0.23 -29.44 16 16 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 17 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 18 N -0.94 -56.98 13.29 21.45 0.28 -56.70 16 19 Si 0.97 43.36 29.54 68.60 2.03 45.38 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 C -0.13 -2.03 9.68 22.23 0.22 -1.81 16 24 C -0.06 -0.94 9.37 22.58 0.21 -0.73 16 25 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.11 0.53 6.47 -2.39 -0.02 0.51 16 28 H 0.12 2.79 7.65 -2.91 -0.02 2.77 16 29 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.13 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.14 1.02 8.08 -2.38 -0.02 1.00 16 32 H 0.42 6.81 8.47 -92.70 -0.79 6.03 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 36 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 37 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 39 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.17 1.14 6.36 -2.91 -0.02 1.12 16 Total: -1.00 -79.83 354.92 3.79 -76.04 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.25 Total: 9.36 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 3.90 Total: -19.41 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -2.29 Total: -76.41 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.10 Total: -34.96 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -79.83 3.79 -76.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.938 kcal (2) G-P(sol) polarization free energy of solvation -79.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds