Wall clock time and date at job start Tue Mar 31 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46776 * 2 1 4 4 C 1.46495 * 119.99664 * 269.99567 * 3 2 1 5 5 C 1.50700 * 109.47334 * 270.00153 * 4 3 2 6 6 H 1.08003 * 119.99960 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00022 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00134 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99852 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47191 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46751 * 120.00558 * 9 7 5 12 12 H 1.48499 * 109.47178 * 240.00105 * 9 7 5 13 13 C 1.34776 * 120.00121 * 90.00432 * 3 2 1 14 14 O 1.21277 * 120.00073 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00060 * 359.97438 * 13 3 2 16 16 C 1.50696 * 109.47405 * 180.02562 * 15 13 3 17 17 C 1.38402 * 119.82806 * 270.28028 * 16 15 13 18 18 C 1.37885 * 120.17407 * 180.28065 * 17 16 15 19 19 C 1.39851 * 119.82281 * 359.43610 * 18 17 16 20 20 C 1.47168 * 120.17582 * 180.29957 * 19 18 17 21 21 C 1.50698 * 120.00520 * 180.02562 * 20 19 18 22 22 O 1.21262 * 119.99476 * 0.02562 * 20 19 18 23 23 C 1.39853 * 119.65985 * 0.28751 * 19 18 17 24 24 C 1.37892 * 119.82327 * 359.97438 * 23 19 18 25 25 H 1.09008 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47374 * 300.00057 * 1 2 3 27 27 H 1.08995 * 109.47282 * 60.00177 * 1 2 3 28 28 H 1.08999 * 109.46765 * 239.99518 * 2 1 3 29 29 H 1.09002 * 109.46994 * 119.99994 * 2 1 3 30 30 H 1.08997 * 109.47319 * 30.00279 * 4 3 2 31 31 H 1.09004 * 109.46625 * 150.00265 * 4 3 2 32 32 H 0.96998 * 120.00212 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47489 * 60.00179 * 15 13 3 34 34 H 1.09007 * 109.47075 * 300.00474 * 15 13 3 35 35 H 1.07998 * 119.91183 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.09199 * 179.72215 * 18 17 16 37 37 H 1.09005 * 109.46530 * 90.00443 * 21 20 19 38 38 H 1.09000 * 109.47058 * 210.00160 * 21 20 19 39 39 H 1.08998 * 109.46815 * 330.00517 * 21 20 19 40 40 H 1.08001 * 120.09350 * 180.02562 * 23 19 18 41 41 H 1.07999 * 119.91308 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8780 8 7 3.3490 3.1256 -3.6182 9 14 5.9131 2.0955 -3.4175 10 1 6.6005 1.2396 -2.4175 11 1 5.9201 1.4162 -4.7381 12 1 6.6209 3.3964 -3.5263 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3064 2.4723 16 6 2.3174 2.2298 3.6177 17 6 3.5998 2.2557 4.1376 18 6 3.9044 3.0936 5.1894 19 6 2.9165 3.9273 5.7231 20 6 3.2349 4.8295 6.8414 21 6 2.1673 5.7258 7.4140 22 8 4.3563 4.8516 7.3021 23 6 1.6245 3.8995 5.1885 24 6 1.3342 3.0520 4.1402 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0954 3.1410 -1.1384 32 1 3.6751 3.5160 -4.4441 33 1 2.6213 0.4187 2.5303 34 1 0.9433 1.0125 2.5299 35 1 4.3626 1.6143 3.7216 36 1 4.9044 3.1095 5.5970 37 1 1.6500 5.2055 8.2201 38 1 2.6262 6.6344 7.8036 39 1 1.4534 5.9856 6.6323 40 1 0.8563 4.5407 5.5950 41 1 0.3371 3.0297 3.7260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267830971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:45 Heat of formation + Delta-G solvation = -55.850469 kcal Electronic energy + Delta-G solvation = -22324.881440 eV Core-core repulsion = 18976.615100 eV Total energy + Delta-G solvation = -3348.266340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16012 -39.23004 -37.99953 -35.31343 -33.21733 -32.65801 -31.31925 -30.20194 -30.05749 -28.16980 -26.50715 -23.44137 -23.02247 -22.58668 -21.96118 -19.83602 -18.40385 -17.07833 -16.60448 -16.29983 -15.91003 -15.70188 -15.11893 -14.99048 -14.65202 -14.30439 -14.09303 -13.80294 -13.55680 -13.42267 -13.16640 -12.66319 -12.50820 -12.37312 -12.17367 -12.02840 -11.83031 -11.61330 -11.53675 -11.19290 -10.99973 -10.91041 -10.73184 -10.54562 -10.14517 -9.85564 -9.63493 -9.11283 -8.95803 -8.62614 -8.45052 -7.69224 -6.05915 -4.10569 0.62520 1.42421 2.33731 3.28740 3.35070 3.37762 3.42257 3.69108 3.95534 4.03786 4.43927 4.69309 4.73144 4.88868 4.93396 5.12264 5.13738 5.18137 5.27987 5.30746 5.31937 5.42270 5.52066 5.59211 5.61732 5.72656 5.73742 5.88741 6.00382 6.02204 6.19823 6.24713 6.38571 6.44828 6.58130 6.88668 7.04833 7.41066 7.42609 7.52549 7.90612 8.21890 8.38993 8.88550 9.06694 9.54768 11.02187 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.003771 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.349018 B = 7424.228489 C = 8374.208348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.533 6.533 15 C -0.113 4.113 16 C -0.018 4.018 17 C -0.118 4.118 18 C -0.058 4.058 19 C -0.184 4.184 20 C 0.397 3.603 21 C -0.201 4.201 22 O -0.466 6.466 23 C -0.072 4.072 24 C -0.121 4.121 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.034 -4.091 17.395 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.410 6.410 15 C -0.153 4.153 16 C -0.018 4.018 17 C -0.136 4.136 18 C -0.076 4.076 19 C -0.185 4.185 20 C 0.276 3.724 21 C -0.258 4.258 22 O -0.342 6.342 23 C -0.090 4.090 24 C -0.139 4.139 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.149 0.851 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.239 -3.356 17.432 19.172 hybrid contribution 0.839 -0.223 -0.651 1.085 sum -6.400 -3.578 16.782 18.313 Atomic orbital electron populations 1.22226 0.96802 1.01433 1.02309 1.21431 0.93504 0.84236 1.02733 1.48264 1.63782 1.13246 1.07666 1.19266 0.96268 0.93623 0.78086 1.21470 0.96939 1.31839 1.06205 0.92447 1.24937 0.97846 0.94925 0.96414 1.69940 1.35591 1.33494 1.14340 0.86454 0.84652 0.78085 0.78302 1.19810 1.20962 1.20864 1.20067 0.78954 0.86998 0.84661 1.90707 1.45275 1.17945 1.87067 1.20919 1.03963 0.98525 0.91889 1.19710 0.93582 0.94903 0.93653 1.21014 0.96088 1.00037 0.96447 1.21332 0.98886 0.93025 0.94351 1.20419 0.95406 1.01861 1.00803 1.22510 0.88627 0.80273 0.80941 1.22235 0.99806 1.00738 1.02974 1.90524 1.23920 1.63114 1.56667 1.21356 0.95234 0.97163 0.95229 1.20956 0.99659 0.96495 0.96779 0.92145 0.93093 0.92025 0.89925 0.91698 0.95030 0.93939 0.92774 0.88220 0.88299 0.85439 0.85133 0.88570 0.89537 0.89407 0.85149 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.60 -12.12 2.46 -175.06 -0.43 -12.55 16 4 C 0.25 6.34 5.16 -5.20 -0.03 6.31 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.51 10.08 7.67 -10.99 -0.08 10.00 16 14 O -0.53 -13.20 15.61 5.56 0.09 -13.11 16 15 C -0.11 -1.55 4.37 -29.04 -0.13 -1.68 16 16 C -0.02 -0.25 4.38 -104.50 -0.46 -0.71 16 17 C -0.12 -1.67 9.68 -39.65 -0.38 -2.06 16 18 C -0.06 -0.80 9.60 -39.11 -0.38 -1.18 16 19 C -0.18 -2.35 5.87 -105.06 -0.62 -2.96 16 20 C 0.40 4.76 7.23 -30.69 -0.22 4.54 16 21 C -0.20 -1.53 9.75 36.00 0.35 -1.18 16 22 O -0.47 -7.11 17.09 5.57 0.10 -7.01 16 23 C -0.07 -0.81 9.37 -39.10 -0.37 -1.17 16 24 C -0.12 -1.52 9.68 -39.64 -0.38 -1.90 16 25 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.05 0.58 7.22 -51.93 -0.37 0.20 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 29 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.10 1.17 7.34 -51.93 -0.38 0.79 16 34 H 0.10 1.08 7.13 -51.92 -0.37 0.71 16 35 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.13 1.73 7.65 -52.49 -0.40 1.33 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.54 6.47 -51.93 -0.34 0.20 16 40 H 0.13 1.02 6.36 -52.49 -0.33 0.68 16 41 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 350.05 15.07 5.28 5.28 Total: -1.00 -35.24 350.05 -7.85 -43.09 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.84 Total: -1.14 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -2.76 Total: -5.63 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.31 Total: -38.33 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.18 Total: -20.12 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.24 -7.85 -43.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267830971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.763 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds