Wall clock time and date at job start Tue Mar 31 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46776 * 2 1 4 4 C 1.46495 * 119.99664 * 269.99567 * 3 2 1 5 5 C 1.50700 * 109.47334 * 270.00153 * 4 3 2 6 6 H 1.08003 * 119.99960 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00022 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00134 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99852 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47191 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46751 * 120.00558 * 9 7 5 12 12 H 1.48499 * 109.47178 * 240.00105 * 9 7 5 13 13 C 1.34776 * 120.00121 * 90.00432 * 3 2 1 14 14 O 1.21277 * 120.00073 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00060 * 359.97438 * 13 3 2 16 16 C 1.50696 * 109.47405 * 180.02562 * 15 13 3 17 17 C 1.38402 * 119.82806 * 270.28028 * 16 15 13 18 18 C 1.37885 * 120.17407 * 180.28065 * 17 16 15 19 19 C 1.39851 * 119.82281 * 359.43610 * 18 17 16 20 20 C 1.47168 * 120.17582 * 180.29957 * 19 18 17 21 21 C 1.50698 * 120.00520 * 180.02562 * 20 19 18 22 22 O 1.21262 * 119.99476 * 0.02562 * 20 19 18 23 23 C 1.39853 * 119.65985 * 0.28751 * 19 18 17 24 24 C 1.37892 * 119.82327 * 359.97438 * 23 19 18 25 25 H 1.09008 * 109.47004 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47374 * 300.00057 * 1 2 3 27 27 H 1.08995 * 109.47282 * 60.00177 * 1 2 3 28 28 H 1.08999 * 109.46765 * 239.99518 * 2 1 3 29 29 H 1.09002 * 109.46994 * 119.99994 * 2 1 3 30 30 H 1.08997 * 109.47319 * 30.00279 * 4 3 2 31 31 H 1.09004 * 109.46625 * 150.00265 * 4 3 2 32 32 H 0.96998 * 120.00212 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47489 * 60.00179 * 15 13 3 34 34 H 1.09007 * 109.47075 * 300.00474 * 15 13 3 35 35 H 1.07998 * 119.91183 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.09199 * 179.72215 * 18 17 16 37 37 H 1.09005 * 109.46530 * 90.00443 * 21 20 19 38 38 H 1.09000 * 109.47058 * 210.00160 * 21 20 19 39 39 H 1.08998 * 109.46815 * 330.00517 * 21 20 19 40 40 H 1.08001 * 120.09350 * 180.02562 * 23 19 18 41 41 H 1.07999 * 119.91308 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1491 2.3896 -2.8780 8 7 3.3490 3.1256 -3.6182 9 14 5.9131 2.0955 -3.4175 10 1 6.6005 1.2396 -2.4175 11 1 5.9201 1.4162 -4.7381 12 1 6.6209 3.3964 -3.5263 13 6 2.2430 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9914 1.3064 2.4723 16 6 2.3174 2.2298 3.6177 17 6 3.5998 2.2557 4.1376 18 6 3.9044 3.0936 5.1894 19 6 2.9165 3.9273 5.7231 20 6 3.2349 4.8295 6.8414 21 6 2.1673 5.7258 7.4140 22 8 4.3563 4.8516 7.3021 23 6 1.6245 3.8995 5.1885 24 6 1.3342 3.0520 4.1402 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0954 3.1410 -1.1384 32 1 3.6751 3.5160 -4.4441 33 1 2.6213 0.4187 2.5303 34 1 0.9433 1.0125 2.5299 35 1 4.3626 1.6143 3.7216 36 1 4.9044 3.1095 5.5970 37 1 1.6500 5.2055 8.2201 38 1 2.6262 6.6344 7.8036 39 1 1.4534 5.9856 6.6323 40 1 0.8563 4.5407 5.5950 41 1 0.3371 3.0297 3.7260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267830971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:45 Heat of formation + Delta-G solvation = -77.481791 kcal Electronic energy + Delta-G solvation = -22325.819445 eV Core-core repulsion = 18976.615100 eV Total energy + Delta-G solvation = -3349.204345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25295 -40.56646 -39.11589 -36.91240 -34.97974 -34.05645 -32.28863 -31.59274 -31.00244 -29.53282 -28.06100 -25.12214 -24.26541 -23.59216 -23.23937 -20.79613 -19.88818 -18.63101 -18.06426 -17.87500 -17.23275 -16.88626 -16.41996 -16.09352 -15.99775 -15.71331 -15.23358 -14.89350 -14.71465 -14.53886 -14.49365 -14.31959 -13.66947 -13.37959 -13.27404 -13.14648 -13.01918 -12.96505 -12.86880 -12.69321 -12.66439 -12.38111 -12.16188 -11.96318 -11.78978 -11.68449 -10.80051 -10.66350 -10.65667 -9.93497 -9.74304 -9.41421 -8.23400 -6.37866 -0.36254 0.44378 1.34359 1.36913 1.38191 1.48414 1.86988 2.31275 2.45270 2.86490 3.06206 3.11341 3.66175 3.78918 3.90305 3.99920 4.12911 4.19447 4.28508 4.40781 4.46892 4.55433 4.58323 4.66336 4.67302 4.72365 4.88379 5.00004 5.03455 5.06372 5.08719 5.11487 5.23950 5.29344 5.42793 5.44779 5.56732 5.58882 5.87352 5.93076 6.06715 6.51434 6.70486 6.83324 7.28427 7.51953 8.83584 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.003771 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.349018 B = 7424.228489 C = 8374.208348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.284 1.284 13 C 0.499 3.501 14 O -0.593 6.593 15 C -0.096 4.096 16 C -0.037 4.037 17 C -0.134 4.134 18 C -0.079 4.079 19 C -0.197 4.197 20 C 0.396 3.604 21 C -0.194 4.194 22 O -0.509 6.509 23 C -0.061 4.061 24 C -0.128 4.128 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.021 0.979 31 H -0.005 1.005 32 H 0.267 0.733 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.127 0.873 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.171 0.829 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 -5.330 18.873 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.335 5.335 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.210 1.210 13 C 0.288 3.712 14 O -0.474 6.474 15 C -0.135 4.135 16 C -0.038 4.038 17 C -0.152 4.152 18 C -0.097 4.097 19 C -0.198 4.198 20 C 0.278 3.722 21 C -0.250 4.250 22 O -0.389 6.389 23 C -0.079 4.079 24 C -0.146 4.146 25 H 0.113 0.887 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.039 0.961 31 H 0.013 0.987 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.127 0.873 40 H 0.189 0.811 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.670 -4.651 18.921 21.326 hybrid contribution 1.229 0.176 -1.096 1.656 sum -7.441 -4.475 17.825 19.828 Atomic orbital electron populations 1.22164 0.94416 1.03539 1.01843 1.21788 0.95451 0.81231 1.04020 1.48289 1.63920 1.15160 1.06101 1.18664 0.95087 0.91482 0.80606 1.21762 0.98028 1.31795 1.06397 0.92913 1.25843 1.02245 0.94562 0.96529 1.70053 1.37623 1.34305 1.14829 0.85404 0.79210 0.77953 0.78466 1.19138 1.19319 1.20955 1.21145 0.77289 0.86513 0.86245 1.90672 1.47858 1.20824 1.88078 1.20879 1.06754 0.98290 0.87574 1.19882 0.93897 0.95928 0.94094 1.21133 0.96615 1.00578 0.96914 1.21440 0.99280 0.94013 0.94959 1.20745 0.95978 1.01781 1.01257 1.23151 0.88957 0.80022 0.80069 1.22274 0.98656 0.99924 1.04151 1.90512 1.25926 1.64528 1.57935 1.21774 0.95270 0.96671 0.94180 1.21338 1.00370 0.95982 0.96903 0.88674 0.91544 0.94544 0.91302 0.87763 0.96075 0.98689 0.92455 0.85816 0.84532 0.85510 0.85885 0.85976 0.89195 0.87290 0.81123 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 10.24 71.98 0.74 -2.82 16 2 C 0.10 2.73 5.93 86.38 0.51 3.24 16 3 N -0.60 -24.54 2.46 -826.16 -2.03 -26.57 16 4 C 0.26 14.11 5.16 85.63 0.44 14.55 16 5 C -0.54 -31.29 9.39 25.60 0.24 -31.05 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 9 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 C 0.50 19.73 7.67 87.66 0.67 20.40 16 14 O -0.59 -30.31 15.61 -3.02 -0.05 -30.35 16 15 C -0.10 -2.40 4.37 29.10 0.13 -2.27 16 16 C -0.04 -1.00 4.38 -19.79 -0.09 -1.09 16 17 C -0.13 -3.83 9.68 22.23 0.22 -3.61 16 18 C -0.08 -2.23 9.60 22.58 0.22 -2.01 16 19 C -0.20 -4.83 5.87 -20.15 -0.12 -4.95 16 20 C 0.40 9.09 7.23 28.03 0.20 9.30 16 21 C -0.19 -2.37 9.75 71.24 0.69 -1.67 16 22 O -0.51 -15.76 17.09 -2.97 -0.05 -15.82 16 23 C -0.06 -1.21 9.37 22.58 0.21 -1.00 16 24 C -0.13 -2.90 9.68 22.23 0.22 -2.68 16 25 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.07 1.26 7.22 -2.39 -0.02 1.25 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 29 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 30 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 31 H -0.01 -0.31 7.42 -2.38 -0.02 -0.33 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.12 2.51 7.34 -2.39 -0.02 2.49 16 34 H 0.14 2.38 7.13 -2.38 -0.02 2.36 16 35 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.12 3.51 7.65 -2.91 -0.02 3.49 16 37 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.11 0.88 6.47 -2.39 -0.02 0.86 16 40 H 0.17 1.88 6.36 -2.91 -0.02 1.86 16 41 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -82.39 350.05 5.95 -76.44 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.02 Total: 9.92 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 4.74 Total: -4.80 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.74 Total: -82.77 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.10 Total: -46.17 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -82.39 5.95 -76.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267830971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.045 kcal (2) G-P(sol) polarization free energy of solvation -82.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds