Wall clock time and date at job start Tue Mar 31 2020 06:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99795 * 2 1 4 4 C 1.53350 * 109.42341 * 270.12917 * 3 2 1 5 5 C 1.53183 * 109.15250 * 178.67619 * 4 3 2 6 6 N 1.46932 * 108.89147 * 54.57814 * 5 4 3 7 7 C 1.34773 * 120.62525 * 126.34419 * 6 5 4 8 8 O 1.21584 * 120.00603 * 354.57215 * 7 6 5 9 9 C 1.47649 * 119.99642 * 174.57667 * 7 6 5 10 10 C 1.40013 * 119.89473 * 326.34308 * 9 7 6 11 11 C 1.36311 * 120.10725 * 179.72340 * 10 9 7 12 12 C 1.40892 * 119.89293 * 0.52877 * 11 10 9 13 13 C 1.41104 * 120.10784 * 179.72119 * 12 11 10 14 14 H 1.07994 * 120.00211 * 204.47114 * 13 12 11 15 15 C 1.40227 * 119.99654 * 24.47172 * 13 12 11 16 16 N 1.30651 * 120.00501 * 17.58934 * 15 13 12 17 17 Si 1.86804 * 119.99764 * 197.59484 * 15 13 12 18 18 H 1.48501 * 109.47274 * 89.99962 * 17 15 13 19 19 H 1.48503 * 109.46902 * 209.99651 * 17 15 13 20 20 H 1.48501 * 109.47330 * 329.99843 * 17 15 13 21 21 C 1.40888 * 119.79025 * 359.74736 * 12 11 10 22 22 C 1.36321 * 119.89120 * 0.02562 * 21 12 11 23 23 C 1.46924 * 118.73921 * 306.32230 * 6 5 4 24 24 C 1.53044 * 109.45754 * 150.00269 * 3 2 1 25 25 H 1.09001 * 109.47433 * 59.98840 * 1 2 3 26 26 H 1.08996 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.46592 * 299.99571 * 1 2 3 28 28 H 1.09002 * 109.45014 * 30.04516 * 3 2 1 29 29 H 1.09007 * 109.68028 * 58.71092 * 4 3 2 30 30 H 1.08998 * 109.47159 * 298.51852 * 4 3 2 31 31 H 1.09008 * 109.58624 * 294.72488 * 5 4 3 32 32 H 1.09000 * 109.59175 * 174.44140 * 5 4 3 33 33 H 1.08001 * 119.94715 * 0.02562 * 10 9 7 34 34 H 1.08005 * 120.05727 * 180.25921 * 11 10 9 35 35 H 0.96996 * 120.00296 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.05421 * 179.97438 * 21 12 11 37 37 H 1.07997 * 119.94559 * 180.02562 * 22 21 12 38 38 H 1.08997 * 109.58583 * 173.39725 * 23 6 5 39 39 H 1.08998 * 109.58445 * 293.67333 * 23 6 5 40 40 H 1.08999 * 109.49676 * 61.43317 * 24 3 2 41 41 H 1.09000 * 109.52424 * 301.35969 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.2146 1.7727 -1.4462 5 6 2.8069 3.1854 -1.4390 6 7 4.0301 3.1842 -0.6249 7 6 5.1912 3.6461 -1.1297 8 8 5.2576 3.9768 -2.2979 9 6 6.3828 3.7505 -0.2641 10 6 6.2350 4.0684 1.0914 11 6 7.3316 4.1603 1.8957 12 6 8.6164 3.9459 1.3585 13 6 9.7551 4.0457 2.1857 14 1 10.7177 4.2764 1.7539 15 6 9.6369 3.8453 3.5686 16 7 8.5849 3.2412 4.0536 17 14 10.9836 4.4424 4.7173 18 1 10.6889 5.8337 5.1447 19 1 11.0435 3.5603 5.9104 20 1 12.2889 4.4078 4.0101 21 6 8.7605 3.6320 -0.0073 22 6 7.6575 3.5377 -0.8028 23 6 3.9632 2.6704 0.7499 24 6 3.3592 1.2630 0.7215 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.3450 1.9989 0.5146 29 1 1.2574 1.7822 -1.9677 30 1 2.8994 1.0936 -1.9541 31 1 2.0850 3.8821 -1.0128 32 1 3.0470 3.4862 -2.4588 33 1 5.2500 4.2362 1.5015 34 1 7.2163 4.4015 2.9422 35 1 8.5033 3.1023 5.0101 36 1 9.7433 3.4672 -0.4237 37 1 7.7669 3.2967 -1.8499 38 1 4.9665 2.6291 1.1738 39 1 3.3377 3.3266 1.3551 40 1 4.0332 0.5885 0.1932 41 1 3.2156 0.9080 1.7420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270270858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:35 Heat of formation + Delta-G solvation = -60.843384 kcal Electronic energy + Delta-G solvation = -22935.428793 eV Core-core repulsion = 19586.945944 eV Total energy + Delta-G solvation = -3348.482849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.95861 -38.38788 -37.15798 -35.93288 -33.93163 -31.97491 -31.19735 -29.80000 -29.49684 -27.00554 -26.04786 -24.26026 -23.23762 -21.78377 -20.98312 -20.48862 -18.81695 -17.53363 -16.87230 -16.39353 -15.76871 -15.42527 -15.22709 -15.01475 -14.72308 -14.26646 -13.84381 -13.67606 -13.11102 -13.07104 -12.89828 -12.50317 -12.39492 -12.23974 -11.98014 -11.75368 -11.52648 -11.28303 -11.22451 -11.08588 -10.97729 -10.92136 -10.67506 -10.46464 -10.04900 -9.60521 -9.54495 -9.31094 -8.94333 -8.28056 -7.67207 -7.54390 -7.02152 -4.59761 2.27775 2.92377 2.96329 2.98554 2.99214 3.47458 3.59918 3.74578 3.81640 4.49727 4.71759 4.80172 5.04358 5.10025 5.18078 5.23270 5.35601 5.41011 5.49211 5.52522 5.64101 5.69312 5.79141 5.87341 6.03515 6.11624 6.15208 6.20895 6.27901 6.33356 6.77123 6.82522 6.92419 7.05792 7.11575 7.13232 7.43359 7.60506 7.79785 7.85385 8.04055 8.09226 8.39959 8.63998 8.74919 8.97124 9.89356 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.003903 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.542117 B = 7172.528352 C = 8113.839967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.090 3.910 4 C -0.153 4.153 5 C 0.116 3.884 6 N -0.620 5.620 7 C 0.578 3.422 8 O -0.570 6.570 9 C -0.280 4.280 10 C -0.073 4.073 11 C -0.177 4.177 12 C 0.127 3.873 13 C -0.444 4.444 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.774 5.774 17 Si 0.913 3.087 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.237 4.237 22 C -0.026 4.026 23 C 0.098 3.902 24 C -0.131 4.131 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.286 0.714 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.945 -3.038 -0.375 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.032 3.968 4 C -0.192 4.192 5 C -0.008 4.008 6 N -0.354 5.354 7 C 0.373 3.627 8 O -0.451 6.451 9 C -0.285 4.285 10 C -0.092 4.092 11 C -0.196 4.196 12 C 0.124 3.876 13 C -0.472 4.472 14 H 0.102 0.898 15 C -0.146 4.146 16 N -0.397 5.397 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.256 4.256 22 C -0.045 4.045 23 C -0.025 4.025 24 C -0.169 4.169 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.898 -3.124 -0.765 12.325 hybrid contribution 0.140 0.305 0.645 0.727 sum -11.759 -2.818 -0.120 12.092 Atomic orbital electron populations 1.22756 0.81575 1.02455 0.99766 1.87938 1.19241 1.28213 1.95047 1.22251 0.95002 0.84102 0.95404 1.22459 1.01490 0.97787 0.97417 1.21385 0.86258 0.95312 0.97816 1.47985 1.08981 1.64226 1.14177 1.18744 0.82375 0.74801 0.86767 1.90630 1.84542 1.51752 1.18183 1.18832 0.91716 1.23811 0.94119 1.20688 0.97685 0.98607 0.92192 1.21010 0.91910 1.06843 0.99826 1.17771 0.93138 0.85461 0.91253 1.19836 0.96096 1.39929 0.91340 0.89791 1.26072 0.96859 0.92278 0.99376 1.69730 1.27434 1.26959 1.15572 0.86219 0.81323 0.79677 0.79106 1.18975 1.20036 1.18328 1.20699 0.96688 1.12943 0.95275 1.20272 0.91489 0.95407 0.97344 1.22292 1.04404 0.92509 0.83291 1.22038 0.95193 0.98454 1.01257 0.94244 0.89883 0.94182 0.92220 0.91169 0.90659 0.92321 0.88912 0.88251 0.86055 0.90284 0.88418 0.88584 0.85862 0.92050 0.90536 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.39 -4.89 10.35 -35.23 -0.36 -5.25 16 3 C 0.09 1.11 2.58 -26.53 -0.07 1.04 16 4 C -0.15 -1.93 5.72 -26.46 -0.15 -2.08 16 5 C 0.12 1.66 6.43 -3.71 -0.02 1.64 16 6 N -0.62 -10.72 2.97 -173.96 -0.52 -11.24 16 7 C 0.58 12.41 7.39 -12.42 -0.09 12.32 16 8 O -0.57 -13.67 16.19 5.29 0.09 -13.59 16 9 C -0.28 -6.35 5.37 -104.73 -0.56 -6.92 16 10 C -0.07 -1.59 7.28 -39.61 -0.29 -1.88 16 11 C -0.18 -4.24 8.64 -39.27 -0.34 -4.58 16 12 C 0.13 3.19 5.58 -106.80 -0.60 2.59 16 13 C -0.44 -10.95 9.05 -37.75 -0.34 -11.29 16 14 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 15 C 0.08 1.73 5.14 -17.31 -0.09 1.64 16 16 N -0.77 -18.13 10.92 55.56 0.61 -17.52 16 17 Si 0.91 17.16 29.60 -169.99 -5.03 12.13 16 18 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 19 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 C -0.24 -5.67 9.73 -39.27 -0.38 -6.05 16 22 C -0.03 -0.61 9.53 -39.61 -0.38 -0.98 16 23 C 0.10 1.48 4.74 -3.72 -0.02 1.47 16 24 C -0.13 -1.79 5.73 -26.61 -0.15 -1.94 16 25 H 0.04 0.31 7.85 -51.93 -0.41 -0.09 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.32 8.09 -51.92 -0.42 -0.10 16 28 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 29 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.09 1.46 6.99 -51.93 -0.36 1.10 16 33 H 0.10 1.89 5.80 -52.49 -0.30 1.59 16 34 H 0.12 2.95 6.13 -52.48 -0.32 2.63 16 35 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 36 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 37 H 0.10 2.16 7.96 -52.49 -0.42 1.74 16 38 H 0.12 2.16 4.32 -51.93 -0.22 1.94 16 39 H 0.06 0.81 8.03 -51.93 -0.42 0.40 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -28.12 330.86 -8.40 -36.52 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.77 Total: 7.63 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.39 Total: -13.66 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 0.09 Total: -28.76 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.28 Total: -18.84 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.12 -8.40 -36.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270270858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.323 kcal (2) G-P(sol) polarization free energy of solvation -28.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds