Wall clock time and date at job start Tue Mar 31 2020 06:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99795 * 2 1 4 4 C 1.53350 * 109.42341 * 270.12917 * 3 2 1 5 5 C 1.53183 * 109.15250 * 178.67619 * 4 3 2 6 6 N 1.46932 * 108.89147 * 54.57814 * 5 4 3 7 7 C 1.34773 * 120.62525 * 126.34419 * 6 5 4 8 8 O 1.21584 * 120.00603 * 354.57215 * 7 6 5 9 9 C 1.47649 * 119.99642 * 174.57667 * 7 6 5 10 10 C 1.40013 * 119.89473 * 326.34308 * 9 7 6 11 11 C 1.36311 * 120.10725 * 179.72340 * 10 9 7 12 12 C 1.40892 * 119.89293 * 0.52877 * 11 10 9 13 13 C 1.41104 * 120.10784 * 179.72119 * 12 11 10 14 14 H 1.07994 * 120.00211 * 204.47114 * 13 12 11 15 15 C 1.40227 * 119.99654 * 24.47172 * 13 12 11 16 16 N 1.30651 * 120.00501 * 17.58934 * 15 13 12 17 17 Si 1.86804 * 119.99764 * 197.59484 * 15 13 12 18 18 H 1.48501 * 109.47274 * 89.99962 * 17 15 13 19 19 H 1.48503 * 109.46902 * 209.99651 * 17 15 13 20 20 H 1.48501 * 109.47330 * 329.99843 * 17 15 13 21 21 C 1.40888 * 119.79025 * 359.74736 * 12 11 10 22 22 C 1.36321 * 119.89120 * 0.02562 * 21 12 11 23 23 C 1.46924 * 118.73921 * 306.32230 * 6 5 4 24 24 C 1.53044 * 109.45754 * 150.00269 * 3 2 1 25 25 H 1.09001 * 109.47433 * 59.98840 * 1 2 3 26 26 H 1.08996 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.09011 * 109.46592 * 299.99571 * 1 2 3 28 28 H 1.09002 * 109.45014 * 30.04516 * 3 2 1 29 29 H 1.09007 * 109.68028 * 58.71092 * 4 3 2 30 30 H 1.08998 * 109.47159 * 298.51852 * 4 3 2 31 31 H 1.09008 * 109.58624 * 294.72488 * 5 4 3 32 32 H 1.09000 * 109.59175 * 174.44140 * 5 4 3 33 33 H 1.08001 * 119.94715 * 0.02562 * 10 9 7 34 34 H 1.08005 * 120.05727 * 180.25921 * 11 10 9 35 35 H 0.96996 * 120.00296 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.05421 * 179.97438 * 21 12 11 37 37 H 1.07997 * 119.94559 * 180.02562 * 22 21 12 38 38 H 1.08997 * 109.58583 * 173.39725 * 23 6 5 39 39 H 1.08998 * 109.58445 * 293.67333 * 23 6 5 40 40 H 1.08999 * 109.49676 * 61.43317 * 24 3 2 41 41 H 1.09000 * 109.52424 * 301.35969 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.2146 1.7727 -1.4462 5 6 2.8069 3.1854 -1.4390 6 7 4.0301 3.1842 -0.6249 7 6 5.1912 3.6461 -1.1297 8 8 5.2576 3.9768 -2.2979 9 6 6.3828 3.7505 -0.2641 10 6 6.2350 4.0684 1.0914 11 6 7.3316 4.1603 1.8957 12 6 8.6164 3.9459 1.3585 13 6 9.7551 4.0457 2.1857 14 1 10.7177 4.2764 1.7539 15 6 9.6369 3.8453 3.5686 16 7 8.5849 3.2412 4.0536 17 14 10.9836 4.4424 4.7173 18 1 10.6889 5.8337 5.1447 19 1 11.0435 3.5603 5.9104 20 1 12.2889 4.4078 4.0101 21 6 8.7605 3.6320 -0.0073 22 6 7.6575 3.5377 -0.8028 23 6 3.9632 2.6704 0.7499 24 6 3.3592 1.2630 0.7215 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.3450 1.9989 0.5146 29 1 1.2574 1.7822 -1.9677 30 1 2.8994 1.0936 -1.9541 31 1 2.0850 3.8821 -1.0128 32 1 3.0470 3.4862 -2.4588 33 1 5.2500 4.2362 1.5015 34 1 7.2163 4.4015 2.9422 35 1 8.5033 3.1023 5.0101 36 1 9.7433 3.4672 -0.4237 37 1 7.7669 3.2967 -1.8499 38 1 4.9665 2.6291 1.1738 39 1 3.3377 3.3266 1.3551 40 1 4.0332 0.5885 0.1932 41 1 3.2156 0.9080 1.7420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270270858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:35 Heat of formation + Delta-G solvation = -76.299124 kcal Electronic energy + Delta-G solvation = -22936.099004 eV Core-core repulsion = 19586.945944 eV Total energy + Delta-G solvation = -3349.153060 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39904 -39.62729 -38.82721 -37.25346 -35.69582 -33.33157 -32.42847 -31.44837 -31.27422 -28.05180 -27.52240 -25.54227 -24.46871 -23.33236 -22.73003 -21.81711 -20.26529 -19.33939 -18.23262 -17.59843 -17.25212 -16.97037 -16.30353 -16.10134 -15.90811 -15.84479 -15.33569 -15.17639 -14.53717 -14.46596 -14.27375 -14.05336 -13.75005 -13.63786 -13.35858 -13.14851 -13.03348 -12.82369 -12.66977 -12.41672 -12.24672 -12.13429 -11.94485 -11.75759 -11.58184 -11.31134 -11.06663 -10.70939 -10.43904 -9.71205 -9.48599 -9.36436 -8.75851 -6.45727 0.51263 1.13553 1.40349 1.44801 1.54067 1.98491 2.14400 2.19090 2.69606 2.83963 3.64574 3.68010 3.76624 3.96998 4.06698 4.13963 4.25811 4.33116 4.41197 4.45163 4.50675 4.56918 4.59696 4.72248 4.82728 4.85835 4.89758 4.93230 4.97813 5.04960 5.09492 5.17822 5.24222 5.30937 5.58578 5.65301 5.82017 5.97949 6.00896 6.24003 6.28957 6.47846 6.56143 6.80025 6.90491 7.32849 8.18726 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.003903 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.542117 B = 7172.528352 C = 8113.839967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.408 6.408 3 C 0.095 3.905 4 C -0.145 4.145 5 C 0.112 3.888 6 N -0.612 5.612 7 C 0.573 3.427 8 O -0.603 6.603 9 C -0.289 4.289 10 C -0.058 4.058 11 C -0.195 4.195 12 C 0.101 3.899 13 C -0.476 4.476 14 H 0.082 0.918 15 C 0.040 3.960 16 N -0.796 5.796 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.260 1.260 21 C -0.252 4.252 22 C -0.037 4.037 23 C 0.096 3.904 24 C -0.127 4.127 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.297 0.703 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 -2.953 1.103 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.037 3.963 4 C -0.183 4.183 5 C -0.010 4.010 6 N -0.345 5.345 7 C 0.368 3.632 8 O -0.487 6.487 9 C -0.294 4.294 10 C -0.076 4.076 11 C -0.214 4.214 12 C 0.098 3.902 13 C -0.504 4.504 14 H 0.100 0.900 15 C -0.179 4.179 16 N -0.420 5.420 17 Si 0.806 3.194 18 H -0.184 1.184 19 H -0.188 1.188 20 H -0.184 1.184 21 C -0.272 4.272 22 C -0.056 4.056 23 C -0.025 4.025 24 C -0.166 4.166 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.070 0.930 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.982 -3.067 0.723 14.333 hybrid contribution 0.644 0.195 0.153 0.690 sum -13.338 -2.871 0.876 13.672 Atomic orbital electron populations 1.22989 0.79559 1.03715 1.00986 1.87912 1.21481 1.28241 1.95146 1.22169 0.94516 0.84784 0.94823 1.22392 1.02020 0.95841 0.98091 1.21619 0.85386 0.97275 0.96701 1.48017 1.08690 1.62493 1.15253 1.18586 0.83297 0.75199 0.86138 1.90606 1.85286 1.53584 1.19268 1.19102 0.92196 1.23266 0.94807 1.20890 0.98471 0.96731 0.91532 1.21026 0.92254 1.08250 0.99879 1.18106 0.94111 0.86144 0.91830 1.20078 0.96008 1.41512 0.92759 0.89991 1.26854 0.99233 0.91732 1.00081 1.69742 1.28804 1.26789 1.16627 0.85139 0.78061 0.79258 0.76977 1.18438 1.18822 1.18383 1.20823 0.97194 1.13772 0.95395 1.20418 0.92054 0.95677 0.97481 1.22359 1.03782 0.94181 0.82226 1.21963 0.95751 0.96694 1.02166 0.93083 0.88793 0.92812 0.89686 0.88408 0.93129 0.89119 0.90654 0.85285 0.86589 0.89182 0.87981 0.88437 0.88414 0.88849 0.93040 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.41 -9.26 10.35 -148.98 -1.54 -10.81 16 3 C 0.09 2.04 2.58 30.73 0.08 2.12 16 4 C -0.14 -3.31 5.72 30.77 0.18 -3.13 16 5 C 0.11 2.98 6.43 86.36 0.56 3.54 16 6 N -0.61 -20.41 2.97 -822.55 -2.45 -22.86 16 7 C 0.57 24.71 7.39 86.73 0.64 25.35 16 8 O -0.60 -29.39 16.19 -3.98 -0.06 -29.46 16 9 C -0.29 -13.32 5.37 -19.93 -0.11 -13.42 16 10 C -0.06 -2.52 7.28 22.25 0.16 -2.35 16 11 C -0.19 -9.51 8.64 22.47 0.19 -9.32 16 12 C 0.10 5.24 5.58 -21.28 -0.12 5.13 16 13 C -0.48 -24.05 9.05 23.46 0.21 -23.84 16 14 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 15 C 0.04 1.84 5.14 85.35 0.44 2.28 16 16 N -0.80 -37.28 10.92 21.87 0.24 -37.04 16 17 Si 0.99 34.68 29.60 68.60 2.03 36.71 16 18 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 19 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 20 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 21 C -0.25 -12.60 9.73 22.47 0.22 -12.38 16 22 C -0.04 -1.80 9.53 22.25 0.21 -1.59 16 23 C 0.10 2.74 4.74 86.36 0.41 3.15 16 24 C -0.13 -3.25 5.73 30.67 0.18 -3.08 16 25 H 0.05 0.62 7.85 -2.39 -0.02 0.60 16 26 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 0.64 8.09 -2.38 -0.02 0.62 16 28 H 0.09 1.45 7.79 -2.39 -0.02 1.43 16 29 H 0.10 1.72 7.85 -2.38 -0.02 1.70 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.07 2.31 6.99 -2.39 -0.02 2.29 16 33 H 0.13 4.73 5.80 -2.91 -0.02 4.71 16 34 H 0.12 5.72 6.13 -2.91 -0.02 5.70 16 35 H 0.30 12.32 8.29 -92.71 -0.77 11.55 16 36 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 37 H 0.10 4.58 7.96 -2.91 -0.02 4.56 16 38 H 0.10 3.34 4.32 -2.39 -0.01 3.33 16 39 H 0.09 2.12 8.03 -2.39 -0.02 2.10 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -62.37 330.86 3.72 -58.64 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 1.03 Total: 30.79 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 4.48 Total: -25.98 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -2.21 Total: -59.90 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.61 Total: -40.26 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -62.37 3.72 -58.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270270858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.656 kcal (2) G-P(sol) polarization free energy of solvation -62.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds