Wall clock time and date at job start Tue Mar 31 2020 07:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99663 * 2 1 4 4 C 1.53004 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.88349 * 51.12312 * 4 3 2 6 6 C 1.55154 * 111.00692 * 174.99782 * 4 3 2 7 7 C 1.54318 * 102.94549 * 153.57627 * 6 4 3 8 8 N 1.47030 * 107.39944 * 337.73315 * 7 6 4 9 9 C 1.34779 * 125.64496 * 178.97782 * 8 7 6 10 10 O 1.21585 * 119.99299 * 174.82865 * 9 8 7 11 11 C 1.47636 * 120.00133 * 354.83098 * 9 8 7 12 12 C 1.40010 * 119.89681 * 7.99189 * 11 9 8 13 13 C 1.36325 * 120.10614 * 179.71605 * 12 11 9 14 14 C 1.40894 * 119.88625 * 0.57913 * 13 12 11 15 15 C 1.41110 * 120.09750 * 179.67242 * 14 13 12 16 16 H 1.08000 * 119.99546 * 214.82583 * 15 14 13 17 17 C 1.40223 * 120.00175 * 34.82675 * 15 14 13 18 18 N 1.30649 * 119.99912 * 355.51000 * 17 15 14 19 19 Si 1.86800 * 120.00049 * 175.50809 * 17 15 14 20 20 H 1.48506 * 109.46985 * 90.00022 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99611 * 19 17 15 22 22 H 1.48494 * 109.47189 * 330.00157 * 19 17 15 23 23 C 1.40880 * 119.79476 * 359.69698 * 14 13 12 24 24 C 1.36319 * 119.89655 * 359.97438 * 23 14 13 25 25 C 1.47736 * 108.53164 * 359.06857 * 8 7 6 26 26 H 1.09007 * 109.46961 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47153 * 299.99469 * 1 2 3 28 28 H 1.08995 * 109.47277 * 60.00361 * 1 2 3 29 29 H 1.09004 * 109.47524 * 59.99806 * 3 2 1 30 30 H 1.09009 * 109.47375 * 299.99963 * 3 2 1 31 31 H 1.09007 * 110.72015 * 35.21225 * 6 4 3 32 32 H 1.08993 * 110.87618 * 272.01569 * 6 4 3 33 33 H 1.09000 * 109.88308 * 97.22600 * 7 6 4 34 34 H 1.08993 * 109.88947 * 218.23992 * 7 6 4 35 35 H 1.08000 * 119.94773 * 0.02562 * 12 11 9 36 36 H 1.07993 * 120.05122 * 180.25626 * 13 12 11 37 37 H 0.97000 * 119.99917 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.04870 * 180.02562 * 23 14 13 39 39 H 1.07994 * 119.94833 * 179.97438 * 24 23 14 40 40 H 1.09008 * 110.28764 * 265.16997 * 25 8 7 41 41 H 1.09000 * 110.47240 * 142.94318 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8720 0.5171 -0.7937 6 6 4.2036 2.5794 -0.1270 7 6 5.5728 2.3695 0.5531 8 7 5.4440 1.2146 1.4539 9 6 6.4288 0.6992 2.2161 10 8 6.1858 -0.2012 2.9960 11 6 7.8027 1.2281 2.1039 12 6 8.0498 2.3708 1.3335 13 6 9.3158 2.8661 1.2317 14 6 10.3782 2.2191 1.8933 15 6 11.6914 2.7240 1.7852 16 1 12.5309 2.0449 1.7642 17 6 11.9063 4.1074 1.7052 18 7 10.8885 4.9240 1.6421 19 14 13.6480 4.7826 1.6887 20 1 14.1288 4.8776 0.2869 21 1 13.6617 6.1316 2.3092 22 1 14.5379 3.8753 2.4568 23 6 10.1254 1.0662 2.6625 24 6 8.8550 0.5822 2.7639 25 6 4.0557 0.7145 1.3805 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5137 -0.8900 29 1 1.6884 1.8465 0.8900 30 1 1.6884 1.8465 -0.8900 31 1 3.6222 3.3349 0.4016 32 1 4.3311 2.8556 -1.1736 33 1 6.3342 2.1686 -0.2006 34 1 5.8428 3.2572 1.1250 35 1 7.2354 2.8635 0.8232 36 1 9.5047 3.7500 0.6406 37 1 11.0372 5.8809 1.5863 38 1 10.9366 0.5672 3.1717 39 1 8.6604 -0.3018 3.3530 40 1 3.4550 1.1483 2.1800 41 1 4.0388 -0.3736 1.4419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270322875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:17 Heat of formation + Delta-G solvation = -44.259606 kcal Electronic energy + Delta-G solvation = -22434.975444 eV Core-core repulsion = 19087.211722 eV Total energy + Delta-G solvation = -3347.763723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.87681 -38.28572 -37.22345 -36.55595 -33.79037 -32.39212 -30.22487 -29.58909 -29.16031 -27.21429 -26.13303 -24.89625 -23.31305 -21.41566 -20.80191 -20.36250 -19.05300 -17.43597 -16.98072 -16.34883 -16.21401 -15.73773 -15.47085 -14.95863 -14.69215 -14.21003 -13.89091 -13.47815 -13.29377 -12.95656 -12.73115 -12.55611 -12.49679 -12.12230 -11.95903 -11.78291 -11.60903 -11.46184 -11.23073 -11.01975 -10.92725 -10.75114 -10.67586 -10.52763 -9.95691 -9.89510 -9.43871 -9.26033 -8.92968 -8.21304 -7.67184 -7.36877 -6.83574 -4.59289 2.23986 2.95459 2.99144 3.03465 3.05650 3.41173 3.60231 3.80511 3.90036 4.46212 4.57652 4.62511 4.80668 5.01839 5.07055 5.16251 5.19091 5.28983 5.40978 5.44811 5.53760 5.56071 5.70675 5.73757 5.87337 6.03246 6.10473 6.18005 6.20074 6.34321 6.72738 6.81866 6.92213 6.92610 7.08070 7.19846 7.52367 7.66588 7.85299 7.92646 8.13290 8.18548 8.48373 8.71173 8.80688 9.02351 10.05188 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033286 B = 0.003208 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.995853 B = 8727.389604 C = 9430.077559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.074 3.926 4 C -0.102 4.102 5 H 0.093 0.907 6 C -0.129 4.129 7 C 0.100 3.900 8 N -0.627 5.627 9 C 0.586 3.414 10 O -0.571 6.571 11 C -0.265 4.265 12 C -0.107 4.107 13 C -0.168 4.168 14 C 0.124 3.876 15 C -0.451 4.451 16 H 0.081 0.919 17 C 0.070 3.930 18 N -0.794 5.794 19 Si 0.919 3.081 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.228 4.228 24 C -0.032 4.032 25 C 0.120 3.880 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.282 0.718 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 0.402 -6.188 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.003 4.003 4 C -0.121 4.121 5 H 0.112 0.888 6 C -0.167 4.167 7 C -0.023 4.023 8 N -0.362 5.362 9 C 0.383 3.617 10 O -0.452 6.452 11 C -0.270 4.270 12 C -0.125 4.125 13 C -0.187 4.187 14 C 0.121 3.879 15 C -0.480 4.480 16 H 0.099 0.901 17 C -0.148 4.148 18 N -0.420 5.420 19 Si 0.743 3.257 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.247 4.247 24 C -0.051 4.051 25 C -0.003 4.003 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.095 -0.012 -5.726 15.214 hybrid contribution 0.509 0.746 0.079 0.906 sum -13.586 0.733 -5.647 14.731 Atomic orbital electron populations 1.22731 0.81134 1.02765 0.99849 1.87920 1.19572 1.27954 1.95387 1.22483 0.92694 0.84749 1.00403 1.22352 0.92949 0.97974 0.98827 0.88821 1.22764 0.96043 0.96133 1.01746 1.22466 0.96631 0.89755 0.93433 1.48368 1.10261 1.32469 1.45068 1.18393 0.84281 0.80919 0.78097 1.90647 1.83747 1.32375 1.38459 1.18946 0.90988 1.03472 1.13552 1.21909 0.98303 0.94940 0.97348 1.21315 0.91818 1.02520 1.03043 1.17891 0.93765 0.89582 0.86628 1.19744 0.93532 0.91845 1.42917 0.90111 1.26026 0.99445 0.97183 0.92119 1.69679 1.32157 1.04901 1.35236 0.86123 0.81535 0.78604 0.79405 1.19239 1.20060 1.18473 1.20858 0.95341 1.02494 1.06014 1.20384 0.92234 0.96989 0.95535 1.22112 0.82673 1.00281 0.95250 0.89653 0.94081 0.94192 0.92912 0.92831 0.90527 0.89718 0.90096 0.90269 0.85578 0.85160 0.90663 0.88304 0.88144 0.92256 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.35 10.67 -35.23 -0.38 -4.72 16 3 C 0.07 0.70 5.39 37.16 0.20 0.90 16 4 C -0.10 -1.15 3.30 -88.47 -0.29 -1.44 16 5 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.13 -1.32 6.42 -24.90 -0.16 -1.47 16 7 C 0.10 1.43 4.86 -3.06 -0.01 1.41 16 8 N -0.63 -11.20 3.34 -176.69 -0.59 -11.79 16 9 C 0.59 13.14 7.80 -12.42 -0.10 13.05 16 10 O -0.57 -14.32 16.67 5.29 0.09 -14.23 16 11 C -0.27 -6.23 5.89 -104.73 -0.62 -6.85 16 12 C -0.11 -2.39 8.51 -39.61 -0.34 -2.72 16 13 C -0.17 -4.14 8.61 -39.27 -0.34 -4.47 16 14 C 0.12 3.22 5.55 -106.80 -0.59 2.62 16 15 C -0.45 -11.45 9.03 -37.75 -0.34 -11.79 16 16 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 17 C 0.07 1.67 5.42 -17.31 -0.09 1.58 16 18 N -0.79 -19.37 10.59 55.56 0.59 -18.78 16 19 Si 0.92 17.87 29.56 -169.99 -5.03 12.84 16 20 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 23 C -0.23 -5.62 9.73 -39.27 -0.38 -6.00 16 24 C -0.03 -0.78 9.52 -39.61 -0.38 -1.16 16 25 C 0.12 1.80 6.34 -2.36 -0.01 1.78 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.47 7.96 -51.93 -0.41 0.05 16 30 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.68 8.04 -51.92 -0.42 0.26 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.19 6.66 -51.93 -0.35 0.84 16 34 H 0.08 1.16 6.77 -51.93 -0.35 0.80 16 35 H 0.13 2.36 2.72 -59.26 -0.16 2.20 16 36 H 0.13 3.26 6.13 -52.49 -0.32 2.94 16 37 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 38 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 39 H 0.10 2.35 7.65 -52.49 -0.40 1.95 16 40 H 0.06 0.86 7.91 -51.92 -0.41 0.45 16 41 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -30.24 334.56 -8.37 -38.61 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.75 Total: 6.23 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.35 Total: -13.20 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.00 Total: -30.57 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.29 Total: -18.95 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.24 -8.37 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270322875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.647 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds