Wall clock time and date at job start Tue Mar 31 2020 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99663 * 2 1 4 4 C 1.53004 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.88349 * 51.12312 * 4 3 2 6 6 C 1.55154 * 111.00692 * 174.99782 * 4 3 2 7 7 C 1.54318 * 102.94549 * 153.57627 * 6 4 3 8 8 N 1.47030 * 107.39944 * 337.73315 * 7 6 4 9 9 C 1.34779 * 125.64496 * 178.97782 * 8 7 6 10 10 O 1.21585 * 119.99299 * 174.82865 * 9 8 7 11 11 C 1.47636 * 120.00133 * 354.83098 * 9 8 7 12 12 C 1.40010 * 119.89681 * 7.99189 * 11 9 8 13 13 C 1.36325 * 120.10614 * 179.71605 * 12 11 9 14 14 C 1.40894 * 119.88625 * 0.57913 * 13 12 11 15 15 C 1.41110 * 120.09750 * 179.67242 * 14 13 12 16 16 H 1.08000 * 119.99546 * 214.82583 * 15 14 13 17 17 C 1.40223 * 120.00175 * 34.82675 * 15 14 13 18 18 N 1.30649 * 119.99912 * 355.51000 * 17 15 14 19 19 Si 1.86800 * 120.00049 * 175.50809 * 17 15 14 20 20 H 1.48506 * 109.46985 * 90.00022 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99611 * 19 17 15 22 22 H 1.48494 * 109.47189 * 330.00157 * 19 17 15 23 23 C 1.40880 * 119.79476 * 359.69698 * 14 13 12 24 24 C 1.36319 * 119.89655 * 359.97438 * 23 14 13 25 25 C 1.47736 * 108.53164 * 359.06857 * 8 7 6 26 26 H 1.09007 * 109.46961 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47153 * 299.99469 * 1 2 3 28 28 H 1.08995 * 109.47277 * 60.00361 * 1 2 3 29 29 H 1.09004 * 109.47524 * 59.99806 * 3 2 1 30 30 H 1.09009 * 109.47375 * 299.99963 * 3 2 1 31 31 H 1.09007 * 110.72015 * 35.21225 * 6 4 3 32 32 H 1.08993 * 110.87618 * 272.01569 * 6 4 3 33 33 H 1.09000 * 109.88308 * 97.22600 * 7 6 4 34 34 H 1.08993 * 109.88947 * 218.23992 * 7 6 4 35 35 H 1.08000 * 119.94773 * 0.02562 * 12 11 9 36 36 H 1.07993 * 120.05122 * 180.25626 * 13 12 11 37 37 H 0.97000 * 119.99917 * 180.02562 * 18 17 15 38 38 H 1.08003 * 120.04870 * 180.02562 * 23 14 13 39 39 H 1.07994 * 119.94833 * 179.97438 * 24 23 14 40 40 H 1.09008 * 110.28764 * 265.16997 * 25 8 7 41 41 H 1.09000 * 110.47240 * 142.94318 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8720 0.5171 -0.7937 6 6 4.2036 2.5794 -0.1270 7 6 5.5728 2.3695 0.5531 8 7 5.4440 1.2146 1.4539 9 6 6.4288 0.6992 2.2161 10 8 6.1858 -0.2012 2.9960 11 6 7.8027 1.2281 2.1039 12 6 8.0498 2.3708 1.3335 13 6 9.3158 2.8661 1.2317 14 6 10.3782 2.2191 1.8933 15 6 11.6914 2.7240 1.7852 16 1 12.5309 2.0449 1.7642 17 6 11.9063 4.1074 1.7052 18 7 10.8885 4.9240 1.6421 19 14 13.6480 4.7826 1.6887 20 1 14.1288 4.8776 0.2869 21 1 13.6617 6.1316 2.3092 22 1 14.5379 3.8753 2.4568 23 6 10.1254 1.0662 2.6625 24 6 8.8550 0.5822 2.7639 25 6 4.0557 0.7145 1.3805 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5137 -0.8900 29 1 1.6884 1.8465 0.8900 30 1 1.6884 1.8465 -0.8900 31 1 3.6222 3.3349 0.4016 32 1 4.3311 2.8556 -1.1736 33 1 6.3342 2.1686 -0.2006 34 1 5.8428 3.2572 1.1250 35 1 7.2354 2.8635 0.8232 36 1 9.5047 3.7500 0.6406 37 1 11.0372 5.8809 1.5863 38 1 10.9366 0.5672 3.1717 39 1 8.6604 -0.3018 3.3530 40 1 3.4550 1.1483 2.1800 41 1 4.0388 -0.3736 1.4419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270322875.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:16 Heat of formation + Delta-G solvation = -62.203797 kcal Electronic energy + Delta-G solvation = -22435.753563 eV Core-core repulsion = 19087.211722 eV Total energy + Delta-G solvation = -3348.541841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33305 -39.47191 -38.75147 -37.93375 -35.61748 -33.69691 -31.87765 -31.38957 -30.38962 -28.37642 -27.41324 -26.10903 -24.56785 -23.11503 -22.48322 -21.41239 -20.67591 -19.29020 -18.17232 -17.71069 -17.20217 -17.02902 -16.68590 -16.52340 -15.86845 -15.66344 -15.14242 -14.98938 -14.71093 -14.51844 -14.21416 -14.02238 -13.83349 -13.56971 -13.32138 -13.06996 -12.88472 -12.82940 -12.58248 -12.41222 -12.33958 -12.04838 -11.85458 -11.73742 -11.61782 -11.19754 -11.03496 -10.69669 -10.55638 -9.72359 -9.55813 -9.25105 -8.63813 -6.51297 0.40246 1.12482 1.40742 1.43171 1.54359 2.06486 2.11709 2.20244 2.79557 2.81509 3.50582 3.57715 3.63538 3.93978 4.10091 4.23847 4.28875 4.34573 4.42382 4.48431 4.50582 4.58468 4.60677 4.65343 4.75542 4.82148 4.90187 4.92074 4.95210 5.04688 5.08270 5.15548 5.27832 5.32052 5.43000 5.63668 5.81416 5.97170 6.02643 6.25241 6.27997 6.56420 6.58693 6.81801 6.90520 7.30045 8.27559 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033286 B = 0.003208 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.995853 B = 8727.389604 C = 9430.077559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.075 3.925 4 C -0.091 4.091 5 H 0.088 0.912 6 C -0.111 4.111 7 C 0.085 3.915 8 N -0.623 5.623 9 C 0.579 3.421 10 O -0.609 6.609 11 C -0.277 4.277 12 C -0.096 4.096 13 C -0.186 4.186 14 C 0.097 3.903 15 C -0.482 4.482 16 H 0.080 0.920 17 C 0.032 3.968 18 N -0.817 5.817 19 Si 0.992 3.008 20 H -0.257 1.257 21 H -0.266 1.266 22 H -0.262 1.262 23 C -0.241 4.241 24 C -0.044 4.044 25 C 0.113 3.887 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.165 0.835 36 H 0.126 0.874 37 H 0.292 0.708 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.360 2.344 -7.694 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.001 4.001 4 C -0.110 4.110 5 H 0.106 0.894 6 C -0.149 4.149 7 C -0.036 4.036 8 N -0.355 5.355 9 C 0.375 3.625 10 O -0.494 6.494 11 C -0.281 4.281 12 C -0.114 4.114 13 C -0.205 4.205 14 C 0.094 3.906 15 C -0.511 4.511 16 H 0.099 0.901 17 C -0.184 4.184 18 N -0.442 5.442 19 Si 0.812 3.188 20 H -0.182 1.182 21 H -0.191 1.191 22 H -0.186 1.186 23 C -0.261 4.261 24 C -0.064 4.064 25 C -0.009 4.009 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.181 0.819 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.399 1.947 -7.267 17.139 hybrid contribution 0.775 0.109 0.542 0.952 sum -14.625 2.057 -6.725 16.227 Atomic orbital electron populations 1.22900 0.79465 1.03586 1.01012 1.87877 1.21511 1.29064 1.95656 1.22522 0.90917 0.84553 1.02136 1.22297 0.94611 0.98373 0.95743 0.89386 1.22749 0.93025 0.95782 1.03329 1.22693 0.99784 0.88177 0.92968 1.48379 1.10506 1.32802 1.43859 1.18268 0.84838 0.80819 0.78595 1.90612 1.84393 1.34040 1.40322 1.19242 0.91722 1.03789 1.13379 1.22308 0.98657 0.94109 0.96328 1.21357 0.92596 1.02817 1.03728 1.18252 0.94779 0.90261 0.87339 1.19995 0.93434 0.93112 1.44544 0.90137 1.26884 1.03696 0.96729 0.91064 1.69710 1.34153 1.05653 1.34731 0.85036 0.76039 0.77906 0.79773 1.18177 1.19070 1.18598 1.20990 0.95806 1.02769 1.06516 1.20523 0.92596 0.97280 0.95960 1.22333 0.81225 0.99041 0.98284 0.89190 0.93309 0.92556 0.91989 0.90138 0.88269 0.86670 0.90275 0.90161 0.81886 0.85670 0.89658 0.87679 0.88188 0.91520 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -8.54 10.67 -148.98 -1.59 -10.13 16 3 C 0.08 1.18 5.39 71.98 0.39 1.57 16 4 C -0.09 -1.82 3.30 -9.40 -0.03 -1.85 16 5 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 6 C -0.11 -1.82 6.42 31.78 0.20 -1.61 16 7 C 0.09 2.25 4.86 86.73 0.42 2.67 16 8 N -0.62 -21.88 3.34 -831.19 -2.77 -24.65 16 9 C 0.58 26.41 7.80 86.72 0.68 27.09 16 10 O -0.61 -31.53 16.67 -3.98 -0.07 -31.59 16 11 C -0.28 -13.28 5.89 -19.94 -0.12 -13.40 16 12 C -0.10 -4.31 8.51 22.25 0.19 -4.12 16 13 C -0.19 -9.30 8.61 22.47 0.19 -9.11 16 14 C 0.10 5.14 5.55 -21.28 -0.12 5.02 16 15 C -0.48 -24.95 9.03 23.46 0.21 -24.74 16 16 H 0.08 4.01 7.85 -2.91 -0.02 3.99 16 17 C 0.03 1.52 5.42 85.35 0.46 1.99 16 18 N -0.82 -39.68 10.59 21.87 0.23 -39.45 16 19 Si 0.99 36.01 29.56 68.60 2.03 38.04 16 20 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 21 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 23 C -0.24 -12.38 9.73 22.47 0.22 -12.16 16 24 C -0.04 -2.23 9.52 22.25 0.21 -2.01 16 25 C 0.11 3.31 6.34 86.79 0.55 3.86 16 26 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.87 7.96 -2.38 -0.02 0.85 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.10 1.26 8.04 -2.38 -0.02 1.24 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 2.15 6.66 -2.39 -0.02 2.13 16 34 H 0.08 2.14 6.77 -2.39 -0.02 2.13 16 35 H 0.16 5.92 2.72 -9.27 -0.03 5.89 16 36 H 0.13 6.35 6.13 -2.91 -0.02 6.33 16 37 H 0.29 12.69 8.29 -92.71 -0.77 11.92 16 38 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 39 H 0.10 4.92 7.65 -2.91 -0.02 4.89 16 40 H 0.07 1.85 7.91 -2.38 -0.02 1.83 16 41 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -67.94 334.56 3.56 -64.39 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 1.02 Total: 28.63 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 4.71 Total: -25.23 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -2.54 Total: -64.11 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.66 Total: -41.73 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -67.94 3.56 -64.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270322875.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.184 kcal (2) G-P(sol) polarization free energy of solvation -67.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds