Wall clock time and date at job start Tue Mar 31 2020 06:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46493 * 120.00040 * 2 1 4 4 C 1.53004 * 109.47262 * 270.00319 * 3 2 1 5 5 H 1.08995 * 110.74867 * 57.01727 * 4 3 2 6 6 C 1.55308 * 110.84712 * 180.71574 * 4 3 2 7 7 C 1.54942 * 100.93993 * 152.32479 * 6 4 3 8 8 O 1.43647 * 105.13805 * 323.55070 * 7 6 4 9 9 C 1.43241 * 109.96944 * 24.43195 * 8 7 6 10 10 C 1.34777 * 120.00099 * 180.02562 * 2 1 3 11 11 O 1.21583 * 120.00091 * 176.03527 * 10 2 1 12 12 C 1.47647 * 119.99944 * 356.03236 * 10 2 1 13 13 C 1.40009 * 119.89855 * 221.44112 * 12 10 2 14 14 C 1.36315 * 120.10827 * 179.71656 * 13 12 10 15 15 C 1.40892 * 119.89167 * 0.58095 * 14 13 12 16 16 C 1.41107 * 120.10329 * 179.67365 * 15 14 13 17 17 H 1.07999 * 119.99798 * 208.97362 * 16 15 14 18 18 C 1.40230 * 120.00068 * 28.97088 * 16 15 14 19 19 N 1.30649 * 119.99711 * 10.83748 * 18 16 15 20 20 Si 1.86797 * 119.99897 * 190.83141 * 18 16 15 21 21 H 1.48506 * 109.46788 * 60.00494 * 20 18 16 22 22 H 1.48501 * 109.47144 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47289 * 300.00387 * 20 18 16 24 24 C 1.40887 * 119.79127 * 359.69260 * 15 14 13 25 25 C 1.36319 * 119.89362 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47556 * 95.23251 * 1 2 3 27 27 H 1.09003 * 109.47200 * 215.22979 * 1 2 3 28 28 H 1.08996 * 109.47242 * 335.22736 * 1 2 3 29 29 H 1.09005 * 109.47335 * 29.99862 * 3 2 1 30 30 H 1.09002 * 109.47352 * 150.00481 * 3 2 1 31 31 H 1.08998 * 111.12298 * 270.24013 * 6 4 3 32 32 H 1.09000 * 111.12582 * 34.40265 * 6 4 3 33 33 H 1.09002 * 110.30939 * 204.64000 * 7 6 4 34 34 H 1.08997 * 110.31662 * 82.46989 * 7 6 4 35 35 H 1.09000 * 109.82827 * 238.77534 * 9 8 7 36 36 H 1.08998 * 109.90771 * 117.84174 * 9 8 7 37 37 H 1.08004 * 119.94414 * 0.02562 * 13 12 10 38 38 H 1.08000 * 120.05431 * 180.29152 * 14 13 12 39 39 H 0.97003 * 119.99281 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.05605 * 180.02562 * 24 15 14 41 41 H 1.07996 * 119.94824 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5147 1.7964 -1.9915 6 6 3.2444 3.0459 -1.4798 7 6 3.9806 2.9133 -2.8367 8 8 4.3156 1.5208 -2.9473 9 6 3.4177 0.7371 -2.1527 10 6 2.1389 -1.1672 -0.0005 11 8 3.3525 -1.1684 -0.0733 12 6 1.4033 -2.4444 0.0874 13 6 1.8908 -3.4761 0.8987 14 6 1.2120 -4.6549 0.9875 15 6 0.0246 -4.8386 0.2517 16 6 -0.6778 -6.0595 0.3350 17 1 -1.2669 -6.4018 -0.5030 18 6 -0.6110 -6.8285 1.5057 19 7 -0.0800 -6.3253 2.5882 20 14 -1.2814 -8.5720 1.5176 21 1 -0.5563 -9.3879 0.5106 22 1 -1.0925 -9.1658 2.8655 23 1 -2.7286 -8.5481 1.1861 24 6 -0.4589 -3.7996 -0.5678 25 6 0.2237 -2.6222 -0.6457 26 1 -0.3634 -0.0937 -1.0234 27 1 -0.3634 -0.8395 0.5928 28 1 -0.3633 0.9331 0.4306 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1383 0.5138 31 1 2.5703 3.9024 -1.4807 32 1 3.9521 3.1061 -0.6530 33 1 4.8854 3.5212 -2.8371 34 1 3.3239 3.2105 -3.6542 35 1 3.9798 0.1679 -1.4124 36 1 2.8537 0.0574 -2.7914 37 1 2.8035 -3.3359 1.4589 38 1 1.5864 -5.4484 1.6172 39 1 -0.0335 -6.8574 3.3980 40 1 -1.3688 -3.9356 -1.1333 41 1 -0.1459 -1.8253 -1.2739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270362809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:20 Heat of formation + Delta-G solvation = -61.646244 kcal Electronic energy + Delta-G solvation = -22850.801044 eV Core-core repulsion = 19502.283380 eV Total energy + Delta-G solvation = -3348.517664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00294 -38.82876 -37.16958 -35.29424 -33.90363 -32.61821 -30.26970 -29.76061 -29.19965 -26.76007 -26.38104 -24.89440 -22.46929 -21.61919 -21.07681 -20.43338 -18.87831 -17.54722 -17.01709 -16.18292 -16.12708 -15.79873 -15.38099 -14.70418 -14.53270 -14.18694 -13.68523 -13.51757 -13.26530 -13.04057 -12.87545 -12.43423 -12.20930 -12.12652 -12.10512 -11.77472 -11.59109 -11.37907 -11.33595 -11.17960 -10.98647 -10.93803 -10.69372 -10.57186 -10.03061 -9.52593 -9.48021 -9.37770 -8.90998 -8.31020 -7.69269 -7.47936 -6.92983 -4.58963 2.30255 2.94838 2.97050 2.99603 3.01514 3.40796 3.64101 3.79217 3.95376 4.44377 4.51162 4.70127 4.85794 5.12275 5.26204 5.28173 5.33281 5.46052 5.52371 5.57308 5.61873 5.68695 5.78746 5.85591 5.89835 6.06270 6.11173 6.15243 6.24434 6.42819 6.78533 6.85830 6.90394 7.03926 7.10398 7.12670 7.45472 7.58452 7.74217 7.87482 7.99249 8.10540 8.45063 8.67019 8.76467 8.88739 9.98922 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040518 B = 0.003251 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.882798 B = 8611.269940 C = 8679.506444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.625 5.625 3 C 0.129 3.871 4 C -0.137 4.137 5 H 0.081 0.919 6 C -0.149 4.149 7 C 0.051 3.949 8 O -0.389 6.389 9 C 0.045 3.955 10 C 0.576 3.424 11 O -0.557 6.557 12 C -0.272 4.272 13 C -0.046 4.046 14 C -0.171 4.171 15 C 0.127 3.873 16 C -0.450 4.450 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.231 4.231 25 C -0.059 4.059 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.285 0.715 40 H 0.097 0.903 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 13.140 -3.137 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.358 5.358 3 C 0.006 3.994 4 C -0.157 4.157 5 H 0.099 0.901 6 C -0.187 4.187 7 C -0.025 4.025 8 O -0.308 6.308 9 C -0.031 4.031 10 C 0.371 3.629 11 O -0.438 6.438 12 C -0.277 4.277 13 C -0.065 4.065 14 C -0.190 4.190 15 C 0.124 3.876 16 C -0.479 4.479 17 H 0.100 0.900 18 C -0.147 4.147 19 N -0.408 5.408 20 Si 0.739 3.261 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.251 4.251 25 C -0.078 4.078 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.596 12.984 -3.021 13.344 hybrid contribution -0.780 -0.572 0.172 0.983 sum -0.184 12.412 -2.849 12.736 Atomic orbital electron populations 1.21989 0.79709 1.02900 1.01470 1.47819 1.06892 1.05460 1.75623 1.21339 0.98142 0.85432 0.94535 1.23181 0.99380 0.94914 0.98234 0.90054 1.23259 0.99498 0.97365 0.98615 1.23295 0.99243 0.83966 0.96021 1.88402 1.55609 1.16730 1.70103 1.23638 0.91607 0.93256 0.94604 1.18801 0.86749 0.83644 0.73702 1.90581 1.14508 1.87443 1.51238 1.18845 1.01626 0.94772 1.12425 1.20394 0.97262 0.92785 0.96048 1.21047 0.96002 0.97271 1.04720 1.17770 0.89818 0.91557 0.88434 1.19744 1.25311 1.03022 0.99775 0.90012 1.26046 0.93607 1.00193 0.94851 1.69707 1.32514 1.37344 1.01189 0.86243 0.80238 0.81130 0.78478 1.18614 1.20128 1.18812 1.20734 1.01580 0.94397 1.08352 1.20580 0.93271 0.96893 0.97052 0.93111 0.89560 0.92228 0.90699 0.89861 0.90066 0.90108 0.90095 0.92669 0.87645 0.92325 0.88774 0.85960 0.90356 0.88513 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 8.97 59.85 0.54 1.64 16 2 N -0.62 -9.91 2.82 -182.77 -0.52 -10.43 16 3 C 0.13 1.68 5.02 -4.04 -0.02 1.66 16 4 C -0.14 -1.69 3.25 -88.67 -0.29 -1.98 16 5 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 6 C -0.15 -1.46 6.62 -24.48 -0.16 -1.62 16 7 C 0.05 0.57 7.78 38.18 0.30 0.87 16 8 O -0.39 -6.11 11.36 -35.23 -0.40 -6.51 16 9 C 0.04 0.71 6.54 37.88 0.25 0.96 16 10 C 0.58 11.68 6.80 -12.42 -0.08 11.59 16 11 O -0.56 -12.54 13.75 5.29 0.07 -12.46 16 12 C -0.27 -6.03 5.15 -104.73 -0.54 -6.57 16 13 C -0.05 -1.09 9.57 -39.61 -0.38 -1.47 16 14 C -0.17 -4.32 8.60 -39.27 -0.34 -4.66 16 15 C 0.13 3.21 5.55 -106.80 -0.59 2.62 16 16 C -0.45 -11.20 9.05 -37.75 -0.34 -11.55 16 17 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 18 C 0.07 1.72 5.25 -17.31 -0.09 1.63 16 19 N -0.78 -19.15 10.84 55.56 0.60 -18.55 16 20 Si 0.92 17.60 29.57 -169.99 -5.03 12.57 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 24 C -0.23 -5.26 9.73 -39.27 -0.38 -5.64 16 25 C -0.06 -1.23 7.56 -39.61 -0.30 -1.53 16 26 H 0.05 0.63 6.81 -51.93 -0.35 0.28 16 27 H 0.09 1.33 6.05 -51.93 -0.31 1.02 16 28 H 0.06 0.62 7.83 -51.93 -0.41 0.21 16 29 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 30 H 0.08 1.21 7.41 -51.93 -0.38 0.82 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.11 1.98 5.07 -51.93 -0.26 1.72 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 38 H 0.12 3.18 6.22 -52.49 -0.33 2.86 16 39 H 0.29 6.34 8.29 -40.82 -0.34 6.01 16 40 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 41 H 0.10 1.73 5.53 -52.49 -0.29 1.44 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -28.36 328.92 -8.42 -36.78 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.67 Total: 7.69 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.44 Total: -14.05 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 0.09 Total: -28.97 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.33 Total: -18.97 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.36 -8.42 -36.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270362809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.867 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds