Wall clock time and date at job start Tue Mar 31 2020 06:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46493 * 120.00040 * 2 1 4 4 C 1.53004 * 109.47262 * 270.00319 * 3 2 1 5 5 H 1.08995 * 110.74867 * 57.01727 * 4 3 2 6 6 C 1.55308 * 110.84712 * 180.71574 * 4 3 2 7 7 C 1.54942 * 100.93993 * 152.32479 * 6 4 3 8 8 O 1.43647 * 105.13805 * 323.55070 * 7 6 4 9 9 C 1.43241 * 109.96944 * 24.43195 * 8 7 6 10 10 C 1.34777 * 120.00099 * 180.02562 * 2 1 3 11 11 O 1.21583 * 120.00091 * 176.03527 * 10 2 1 12 12 C 1.47647 * 119.99944 * 356.03236 * 10 2 1 13 13 C 1.40009 * 119.89855 * 221.44112 * 12 10 2 14 14 C 1.36315 * 120.10827 * 179.71656 * 13 12 10 15 15 C 1.40892 * 119.89167 * 0.58095 * 14 13 12 16 16 C 1.41107 * 120.10329 * 179.67365 * 15 14 13 17 17 H 1.07999 * 119.99798 * 208.97362 * 16 15 14 18 18 C 1.40230 * 120.00068 * 28.97088 * 16 15 14 19 19 N 1.30649 * 119.99711 * 10.83748 * 18 16 15 20 20 Si 1.86797 * 119.99897 * 190.83141 * 18 16 15 21 21 H 1.48506 * 109.46788 * 60.00494 * 20 18 16 22 22 H 1.48501 * 109.47144 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47289 * 300.00387 * 20 18 16 24 24 C 1.40887 * 119.79127 * 359.69260 * 15 14 13 25 25 C 1.36319 * 119.89362 * 0.02562 * 24 15 14 26 26 H 1.09000 * 109.47556 * 95.23251 * 1 2 3 27 27 H 1.09003 * 109.47200 * 215.22979 * 1 2 3 28 28 H 1.08996 * 109.47242 * 335.22736 * 1 2 3 29 29 H 1.09005 * 109.47335 * 29.99862 * 3 2 1 30 30 H 1.09002 * 109.47352 * 150.00481 * 3 2 1 31 31 H 1.08998 * 111.12298 * 270.24013 * 6 4 3 32 32 H 1.09000 * 111.12582 * 34.40265 * 6 4 3 33 33 H 1.09002 * 110.30939 * 204.64000 * 7 6 4 34 34 H 1.08997 * 110.31662 * 82.46989 * 7 6 4 35 35 H 1.09000 * 109.82827 * 238.77534 * 9 8 7 36 36 H 1.08998 * 109.90771 * 117.84174 * 9 8 7 37 37 H 1.08004 * 119.94414 * 0.02562 * 13 12 10 38 38 H 1.08000 * 120.05431 * 180.29152 * 14 13 12 39 39 H 0.97003 * 119.99281 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.05605 * 180.02562 * 24 15 14 41 41 H 1.07996 * 119.94824 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 1 1.5147 1.7964 -1.9915 6 6 3.2444 3.0459 -1.4798 7 6 3.9806 2.9133 -2.8367 8 8 4.3156 1.5208 -2.9473 9 6 3.4177 0.7371 -2.1527 10 6 2.1389 -1.1672 -0.0005 11 8 3.3525 -1.1684 -0.0733 12 6 1.4033 -2.4444 0.0874 13 6 1.8908 -3.4761 0.8987 14 6 1.2120 -4.6549 0.9875 15 6 0.0246 -4.8386 0.2517 16 6 -0.6778 -6.0595 0.3350 17 1 -1.2669 -6.4018 -0.5030 18 6 -0.6110 -6.8285 1.5057 19 7 -0.0800 -6.3253 2.5882 20 14 -1.2814 -8.5720 1.5176 21 1 -0.5563 -9.3879 0.5106 22 1 -1.0925 -9.1658 2.8655 23 1 -2.7286 -8.5481 1.1861 24 6 -0.4589 -3.7996 -0.5678 25 6 0.2237 -2.6222 -0.6457 26 1 -0.3634 -0.0937 -1.0234 27 1 -0.3634 -0.8395 0.5928 28 1 -0.3633 0.9331 0.4306 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1383 0.5138 31 1 2.5703 3.9024 -1.4807 32 1 3.9521 3.1061 -0.6530 33 1 4.8854 3.5212 -2.8371 34 1 3.3239 3.2105 -3.6542 35 1 3.9798 0.1679 -1.4124 36 1 2.8537 0.0574 -2.7914 37 1 2.8035 -3.3359 1.4589 38 1 1.5864 -5.4484 1.6172 39 1 -0.0335 -6.8574 3.3980 40 1 -1.3688 -3.9356 -1.1333 41 1 -0.1459 -1.8253 -1.2739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270362809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:19 Heat of formation + Delta-G solvation = -77.904652 kcal Electronic energy + Delta-G solvation = -22851.506062 eV Core-core repulsion = 19502.283380 eV Total energy + Delta-G solvation = -3349.222681 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34222 -40.10676 -38.88321 -36.67877 -35.65839 -33.77198 -31.93275 -31.44704 -30.38234 -28.05033 -27.86900 -26.32595 -23.66079 -23.01533 -22.79689 -21.65045 -20.31615 -19.35625 -18.33060 -17.53878 -17.25528 -17.09412 -17.07633 -16.02411 -15.80998 -15.65528 -15.19630 -14.98006 -14.59000 -14.24573 -14.22458 -14.03963 -13.68792 -13.57265 -13.34103 -13.23953 -13.05816 -12.80966 -12.58619 -12.51222 -12.26685 -12.22874 -11.88076 -11.75378 -11.67438 -11.34194 -11.12943 -10.77472 -10.35769 -9.65054 -9.49579 -9.29884 -8.69823 -6.46705 0.54910 1.14193 1.38980 1.45090 1.51448 1.97887 2.15869 2.19643 2.74048 2.96350 3.49376 3.65724 3.75557 3.90879 4.00926 4.25968 4.30201 4.33475 4.36599 4.38917 4.48976 4.58010 4.65601 4.79161 4.83067 4.90348 4.96560 4.98549 5.01141 5.04336 5.05705 5.21276 5.28486 5.30025 5.61866 5.67612 5.79038 5.99450 6.02882 6.06793 6.23663 6.47718 6.59270 6.81865 6.91667 7.35110 8.24588 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040518 B = 0.003251 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.882798 B = 8611.269940 C = 8679.506444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.615 5.615 3 C 0.126 3.874 4 C -0.128 4.128 5 H 0.098 0.902 6 C -0.136 4.136 7 C 0.039 3.961 8 O -0.418 6.418 9 C 0.045 3.955 10 C 0.572 3.428 11 O -0.588 6.588 12 C -0.276 4.276 13 C -0.059 4.059 14 C -0.192 4.192 15 C 0.100 3.900 16 C -0.483 4.483 17 H 0.087 0.913 18 C 0.033 3.967 19 N -0.816 5.816 20 Si 0.988 3.012 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.255 1.255 24 C -0.240 4.240 25 C -0.046 4.046 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.292 0.708 40 H 0.114 0.886 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 15.588 -3.797 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C 0.004 3.996 4 C -0.148 4.148 5 H 0.116 0.884 6 C -0.174 4.174 7 C -0.036 4.036 8 O -0.338 6.338 9 C -0.031 4.031 10 C 0.365 3.635 11 O -0.471 6.471 12 C -0.280 4.280 13 C -0.079 4.079 14 C -0.211 4.211 15 C 0.097 3.903 16 C -0.511 4.511 17 H 0.105 0.895 18 C -0.184 4.184 19 N -0.441 5.441 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.193 1.193 23 H -0.179 1.179 24 C -0.260 4.260 25 C -0.064 4.064 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.137 0.863 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.211 15.487 -3.685 15.966 hybrid contribution -0.151 -1.156 0.336 1.213 sum -1.362 14.331 -3.349 14.780 Atomic orbital electron populations 1.22181 0.77743 1.04261 1.02431 1.47803 1.08145 1.05083 1.73591 1.21584 0.97805 0.84759 0.95425 1.23131 0.99389 0.95156 0.97135 0.88371 1.23258 0.99550 0.96951 0.97665 1.23636 1.00748 0.81726 0.97526 1.88370 1.56076 1.19241 1.70156 1.23446 0.91844 0.94073 0.93768 1.18557 0.86289 0.84498 0.74165 1.90584 1.15729 1.88033 1.52766 1.19163 1.01964 0.95463 1.11420 1.20486 0.97231 0.93304 0.96866 1.20952 0.96963 0.97478 1.05745 1.18112 0.90034 0.92828 0.89361 1.20035 1.26415 1.03932 1.00728 0.89494 1.26920 0.93480 1.04022 0.93984 1.69776 1.33424 1.39016 1.01897 0.85154 0.79748 0.75651 0.78645 1.18506 1.19312 1.17855 1.20986 1.02408 0.94419 1.08149 1.20865 0.92187 0.97108 0.96260 0.91486 0.91869 0.88034 0.86350 0.91852 0.86411 0.90026 0.88491 0.91117 0.91115 0.94358 0.89310 0.87829 0.89741 0.86814 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.75 8.97 127.77 1.15 2.89 16 2 N -0.61 -18.18 2.82 -850.42 -2.40 -20.58 16 3 C 0.13 2.92 5.02 86.38 0.43 3.35 16 4 C -0.13 -2.78 3.25 -9.53 -0.03 -2.81 16 5 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.14 -2.13 6.62 32.05 0.21 -1.92 16 7 C 0.04 0.76 7.78 72.65 0.56 1.33 16 8 O -0.42 -12.92 11.36 -148.98 -1.69 -14.61 16 9 C 0.04 1.43 6.54 72.45 0.47 1.90 16 10 C 0.57 23.18 6.80 86.73 0.59 23.77 16 11 O -0.59 -27.28 13.75 -3.98 -0.05 -27.34 16 12 C -0.28 -12.36 5.15 -19.93 -0.10 -12.46 16 13 C -0.06 -2.98 9.57 22.25 0.21 -2.77 16 14 C -0.19 -10.22 8.60 22.47 0.19 -10.02 16 15 C 0.10 5.18 5.55 -21.28 -0.12 5.06 16 16 C -0.48 -24.66 9.05 23.46 0.21 -24.45 16 17 H 0.09 4.18 7.87 -2.91 -0.02 4.16 16 18 C 0.03 1.56 5.25 85.35 0.45 2.01 16 19 N -0.82 -41.28 10.84 21.87 0.24 -41.04 16 20 Si 0.99 36.25 29.57 68.60 2.03 38.28 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 22 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 23 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 24 C -0.24 -10.94 9.73 22.47 0.22 -10.72 16 25 C -0.05 -1.87 7.56 22.25 0.17 -1.71 16 26 H 0.07 1.37 6.81 -2.39 -0.02 1.35 16 27 H 0.06 1.80 6.05 -2.39 -0.01 1.79 16 28 H 0.10 1.55 7.83 -2.39 -0.02 1.53 16 29 H 0.12 1.77 7.86 -2.38 -0.02 1.75 16 30 H 0.06 1.76 7.41 -2.39 -0.02 1.74 16 31 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.29 8.04 -2.39 -0.02 1.27 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 2.76 5.07 -2.39 -0.01 2.74 16 36 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 4.40 8.06 -2.91 -0.02 4.37 16 38 H 0.10 5.78 6.22 -2.91 -0.02 5.76 16 39 H 0.29 13.34 8.29 -92.71 -0.77 12.58 16 40 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.13 4.41 5.53 -2.91 -0.02 4.39 16 Total: -1.00 -66.30 328.92 3.77 -62.52 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 1.03 Total: 29.29 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 4.62 Total: -26.53 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -2.16 Total: -61.62 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.75 Total: -41.95 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Total: -66.30 3.77 -62.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270362809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.380 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds