Wall clock time and date at job start Tue Mar 31 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00369 * 2 1 4 4 C 1.52997 * 109.46936 * 89.99998 * 3 2 1 5 5 H 1.08997 * 110.80828 * 305.70664 * 4 3 2 6 6 C 1.54812 * 110.90539 * 182.07602 * 4 3 2 7 7 C 1.54107 * 104.18751 * 220.92479 * 6 4 3 8 8 O 1.43748 * 107.29093 * 357.97146 * 7 6 4 9 9 C 1.44411 * 107.00247 * 26.48878 * 8 7 6 10 10 C 1.34781 * 120.00010 * 180.02562 * 2 1 3 11 11 O 1.21586 * 120.00028 * 185.01811 * 10 2 1 12 12 C 1.47635 * 120.00124 * 5.01498 * 10 2 1 13 13 C 1.40024 * 119.89321 * 21.78745 * 12 10 2 14 14 C 1.36318 * 120.10355 * 179.71797 * 13 12 10 15 15 C 1.40891 * 119.89229 * 0.55579 * 14 13 12 16 16 C 1.41111 * 120.10099 * 179.74143 * 15 14 13 17 17 H 1.07992 * 120.00068 * 330.13752 * 16 15 14 18 18 C 1.40223 * 119.99713 * 150.14102 * 16 15 14 19 19 N 1.30650 * 120.00291 * 166.79517 * 18 16 15 20 20 Si 1.86804 * 120.00388 * 346.78897 * 18 16 15 21 21 H 1.48501 * 109.46816 * 88.87329 * 20 18 16 22 22 H 1.48497 * 109.47429 * 208.87079 * 20 18 16 23 23 H 1.48499 * 109.47084 * 328.87641 * 20 18 16 24 24 C 1.40887 * 119.79419 * 359.71895 * 15 14 13 25 25 C 1.36321 * 119.89283 * 359.97438 * 24 15 14 26 26 H 1.08996 * 109.47392 * 84.51918 * 1 2 3 27 27 H 1.08999 * 109.46843 * 324.51680 * 1 2 3 28 28 H 1.09000 * 109.46738 * 204.52489 * 1 2 3 29 29 H 1.08995 * 109.47382 * 210.00848 * 3 2 1 30 30 H 1.09002 * 109.46582 * 330.00256 * 3 2 1 31 31 H 1.09001 * 110.48955 * 339.60055 * 6 4 3 32 32 H 1.08999 * 110.49015 * 102.25038 * 6 4 3 33 33 H 1.08997 * 109.87907 * 117.39339 * 7 6 4 34 34 H 1.08997 * 109.87719 * 238.39738 * 7 6 4 35 35 H 1.08997 * 110.65428 * 201.48125 * 9 8 7 36 36 H 1.09001 * 110.60214 * 78.47138 * 9 8 7 37 37 H 1.08000 * 119.94651 * 359.97438 * 13 12 10 38 38 H 1.07999 * 120.05029 * 180.27338 * 14 13 12 39 39 H 0.96993 * 120.00223 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.05230 * 180.02562 * 24 15 14 41 41 H 1.07997 * 119.94806 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5203 1.7503 2.0057 6 6 3.1806 3.0760 1.4816 7 6 4.2206 2.9174 2.6078 8 8 4.0451 1.6061 3.1699 9 6 3.4771 0.7753 2.1343 10 6 2.1389 -1.1672 -0.0005 11 8 3.3512 -1.1693 0.0916 12 6 1.4050 -2.4433 -0.1129 13 6 0.1178 -2.4619 -0.6638 14 6 -0.5614 -3.6386 -0.7749 15 6 0.0290 -4.8355 -0.3235 16 6 -0.6723 -6.0552 -0.4313 17 1 -1.7513 -6.0634 -0.3866 18 6 0.0318 -7.2566 -0.5964 19 7 -0.5808 -8.3998 -0.4390 20 14 1.8457 -7.2226 -1.0416 21 1 2.6592 -7.1774 0.1999 22 1 2.1888 -8.4435 -1.8141 23 1 2.1310 -6.0197 -1.8643 24 6 1.3221 -4.8109 0.2355 25 6 1.9961 -3.6303 0.3366 26 1 -0.3634 0.0981 -1.0229 27 1 -0.3633 0.8368 0.5965 28 1 -0.3633 -0.9350 0.4266 29 1 3.1499 1.1384 -0.5139 30 1 1.6084 2.0283 -0.5138 31 1 3.6754 3.2720 0.5303 32 1 2.4793 3.8756 1.7198 33 1 5.2266 3.0141 2.1995 34 1 4.0568 3.6762 3.3730 35 1 2.9755 -0.0900 2.5675 36 1 4.2469 0.4609 1.4294 37 1 -0.3359 -1.5432 -1.0051 38 1 -1.5524 -3.6526 -1.2040 39 1 -0.0938 -9.2307 -0.5536 40 1 1.7788 -5.7260 0.5824 41 1 2.9875 -3.6104 0.7646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270362810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:24 Heat of formation + Delta-G solvation = -43.787137 kcal Electronic energy + Delta-G solvation = -22966.191015 eV Core-core repulsion = 19618.447780 eV Total energy + Delta-G solvation = -3347.743235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.09454 -38.98985 -37.39939 -35.43776 -33.95250 -32.81015 -30.82240 -30.09940 -29.36326 -26.95080 -26.49281 -24.86498 -22.59259 -21.78633 -21.26929 -20.47553 -19.12642 -17.82755 -16.92993 -16.52882 -16.15757 -15.53308 -15.48501 -14.97098 -14.57412 -14.29964 -14.02839 -13.80536 -13.53191 -12.96273 -12.93162 -12.77313 -12.49657 -12.36924 -12.09883 -11.90071 -11.82485 -11.60341 -11.45906 -11.01143 -10.84753 -10.82466 -10.66792 -10.21751 -10.16609 -9.73970 -9.64718 -9.27678 -9.05625 -8.42477 -7.92366 -7.76042 -7.20170 -4.74850 2.00342 2.62324 2.99153 3.11649 3.20117 3.31579 3.58516 3.82973 3.96788 4.41959 4.47634 4.64330 4.82519 4.96847 5.18851 5.24122 5.24881 5.31339 5.42630 5.52739 5.57271 5.62321 5.70259 5.77953 5.83583 5.89158 5.92630 6.02216 6.07095 6.19744 6.38091 6.62813 6.65530 6.79716 6.89163 6.94903 7.24504 7.33862 7.46374 7.67263 7.87256 7.88871 8.09909 8.42361 8.54057 8.81548 9.79571 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031193 B = 0.003762 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.411379 B = 7441.350459 C = 7929.389558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.625 5.625 3 C 0.130 3.870 4 C -0.137 4.137 5 H 0.083 0.917 6 C -0.149 4.149 7 C 0.048 3.952 8 O -0.386 6.386 9 C 0.059 3.941 10 C 0.572 3.428 11 O -0.563 6.563 12 C -0.285 4.285 13 C -0.067 4.067 14 C -0.220 4.220 15 C 0.107 3.893 16 C -0.423 4.423 17 H 0.096 0.904 18 C 0.080 3.920 19 N -0.791 5.791 20 Si 0.921 3.079 21 H -0.265 1.265 22 H -0.291 1.291 23 H -0.243 1.243 24 C -0.258 4.258 25 C -0.009 4.009 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.291 0.709 40 H 0.107 0.893 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 16.759 0.753 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.358 5.358 3 C 0.007 3.993 4 C -0.157 4.157 5 H 0.102 0.898 6 C -0.187 4.187 7 C -0.029 4.029 8 O -0.305 6.305 9 C -0.017 4.017 10 C 0.368 3.632 11 O -0.444 6.444 12 C -0.289 4.289 13 C -0.085 4.085 14 C -0.239 4.239 15 C 0.103 3.897 16 C -0.450 4.450 17 H 0.114 0.886 18 C -0.142 4.142 19 N -0.413 5.413 20 Si 0.748 3.252 21 H -0.191 1.191 22 H -0.218 1.218 23 H -0.166 1.166 24 C -0.277 4.277 25 C -0.028 4.028 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.154 16.387 1.003 16.718 hybrid contribution 0.440 -0.088 -0.365 0.578 sum 3.594 16.300 0.638 16.703 Atomic orbital electron populations 1.22447 0.80102 1.03950 1.00850 1.47692 1.06698 1.05500 1.75948 1.21284 0.97957 0.85384 0.94691 1.23168 0.99820 0.94714 0.98046 0.89845 1.22932 0.98442 0.97589 0.99751 1.23081 0.98046 0.86161 0.95632 1.88858 1.84263 1.20715 1.36660 1.23732 0.95067 0.93193 0.89717 1.18632 0.86757 0.83468 0.74322 1.90637 1.14297 1.87396 1.52086 1.18857 0.97816 0.91933 1.20321 1.21344 0.93198 0.97882 0.96119 1.20727 1.01316 0.92682 1.09172 1.17895 0.91113 0.93519 0.87168 1.19768 0.96768 0.89151 1.39343 0.88625 1.26364 1.01775 0.94635 0.91385 1.69566 1.40045 0.99330 1.32361 0.86204 0.80583 0.78569 0.79848 1.19145 1.21822 1.16571 1.20832 0.98677 0.97051 1.11152 1.20368 0.96986 0.91513 0.93925 0.92693 0.92606 0.88149 0.89930 0.90776 0.90493 0.90566 0.92664 0.90299 0.89406 0.90333 0.86133 0.87748 0.89788 0.87589 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.67 59.85 0.52 1.35 16 2 N -0.63 -9.24 2.84 -182.78 -0.52 -9.76 16 3 C 0.13 1.59 4.92 -4.04 -0.02 1.57 16 4 C -0.14 -1.62 3.36 -88.61 -0.30 -1.92 16 5 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 6 C -0.15 -1.38 6.60 -25.20 -0.17 -1.55 16 7 C 0.05 0.51 7.70 37.74 0.29 0.80 16 8 O -0.39 -5.75 11.52 -35.23 -0.41 -6.15 16 9 C 0.06 0.88 5.67 38.21 0.22 1.10 16 10 C 0.57 10.93 7.10 -12.42 -0.09 10.84 16 11 O -0.56 -11.97 13.81 5.29 0.07 -11.89 16 12 C -0.28 -5.93 5.59 -104.73 -0.59 -6.51 16 13 C -0.07 -1.29 7.48 -39.60 -0.30 -1.58 16 14 C -0.22 -4.68 9.73 -39.27 -0.38 -5.06 16 15 C 0.11 2.56 5.16 -106.80 -0.55 2.01 16 16 C -0.42 -10.72 9.60 -37.75 -0.36 -11.08 16 17 H 0.10 2.50 8.06 -52.49 -0.42 2.07 16 18 C 0.08 1.99 5.47 -17.31 -0.09 1.90 16 19 N -0.79 -19.83 13.92 55.56 0.77 -19.06 16 20 Si 0.92 20.28 24.41 -169.99 -4.15 16.13 16 21 H -0.27 -5.72 6.45 56.52 0.36 -5.35 16 22 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.24 -5.56 6.88 56.52 0.39 -5.17 16 24 C -0.26 -6.09 7.07 -39.27 -0.28 -6.37 16 25 C -0.01 -0.20 9.52 -39.61 -0.38 -0.57 16 26 H 0.05 0.59 7.17 -51.93 -0.37 0.22 16 27 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 28 H 0.10 1.38 4.97 -51.93 -0.26 1.12 16 29 H 0.08 1.12 7.40 -51.93 -0.38 0.73 16 30 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.30 6.70 -51.93 -0.35 0.96 16 37 H 0.12 1.87 4.10 -52.49 -0.22 1.66 16 38 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 39 H 0.29 6.59 8.29 -40.82 -0.34 6.25 16 40 H 0.11 2.49 4.16 -52.49 -0.22 2.28 16 41 H 0.10 2.25 7.79 -52.49 -0.41 1.84 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -28.23 322.01 -7.45 -35.67 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.60 Total: 5.29 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.47 Total: -15.08 kcal Atomic # 7 Polarization: -29.07 SS G_CDS: 0.25 Total: -28.82 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.33 Total: -18.05 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.15 Total: 16.13 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.23 -7.45 -35.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270362810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.115 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds