Wall clock time and date at job start Tue Mar 31 2020 06:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 120.00369 * 2 1 4 4 C 1.52997 * 109.46936 * 89.99998 * 3 2 1 5 5 H 1.08997 * 110.80828 * 305.70664 * 4 3 2 6 6 C 1.54812 * 110.90539 * 182.07602 * 4 3 2 7 7 C 1.54107 * 104.18751 * 220.92479 * 6 4 3 8 8 O 1.43748 * 107.29093 * 357.97146 * 7 6 4 9 9 C 1.44411 * 107.00247 * 26.48878 * 8 7 6 10 10 C 1.34781 * 120.00010 * 180.02562 * 2 1 3 11 11 O 1.21586 * 120.00028 * 185.01811 * 10 2 1 12 12 C 1.47635 * 120.00124 * 5.01498 * 10 2 1 13 13 C 1.40024 * 119.89321 * 21.78745 * 12 10 2 14 14 C 1.36318 * 120.10355 * 179.71797 * 13 12 10 15 15 C 1.40891 * 119.89229 * 0.55579 * 14 13 12 16 16 C 1.41111 * 120.10099 * 179.74143 * 15 14 13 17 17 H 1.07992 * 120.00068 * 330.13752 * 16 15 14 18 18 C 1.40223 * 119.99713 * 150.14102 * 16 15 14 19 19 N 1.30650 * 120.00291 * 166.79517 * 18 16 15 20 20 Si 1.86804 * 120.00388 * 346.78897 * 18 16 15 21 21 H 1.48501 * 109.46816 * 88.87329 * 20 18 16 22 22 H 1.48497 * 109.47429 * 208.87079 * 20 18 16 23 23 H 1.48499 * 109.47084 * 328.87641 * 20 18 16 24 24 C 1.40887 * 119.79419 * 359.71895 * 15 14 13 25 25 C 1.36321 * 119.89283 * 359.97438 * 24 15 14 26 26 H 1.08996 * 109.47392 * 84.51918 * 1 2 3 27 27 H 1.08999 * 109.46843 * 324.51680 * 1 2 3 28 28 H 1.09000 * 109.46738 * 204.52489 * 1 2 3 29 29 H 1.08995 * 109.47382 * 210.00848 * 3 2 1 30 30 H 1.09002 * 109.46582 * 330.00256 * 3 2 1 31 31 H 1.09001 * 110.48955 * 339.60055 * 6 4 3 32 32 H 1.08999 * 110.49015 * 102.25038 * 6 4 3 33 33 H 1.08997 * 109.87907 * 117.39339 * 7 6 4 34 34 H 1.08997 * 109.87719 * 238.39738 * 7 6 4 35 35 H 1.08997 * 110.65428 * 201.48125 * 9 8 7 36 36 H 1.09001 * 110.60214 * 78.47138 * 9 8 7 37 37 H 1.08000 * 119.94651 * 359.97438 * 13 12 10 38 38 H 1.07999 * 120.05029 * 180.27338 * 14 13 12 39 39 H 0.96993 * 120.00223 * 179.97438 * 19 18 16 40 40 H 1.08000 * 120.05230 * 180.02562 * 24 15 14 41 41 H 1.07997 * 119.94806 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5203 1.7503 2.0057 6 6 3.1806 3.0760 1.4816 7 6 4.2206 2.9174 2.6078 8 8 4.0451 1.6061 3.1699 9 6 3.4771 0.7753 2.1343 10 6 2.1389 -1.1672 -0.0005 11 8 3.3512 -1.1693 0.0916 12 6 1.4050 -2.4433 -0.1129 13 6 0.1178 -2.4619 -0.6638 14 6 -0.5614 -3.6386 -0.7749 15 6 0.0290 -4.8355 -0.3235 16 6 -0.6723 -6.0552 -0.4313 17 1 -1.7513 -6.0634 -0.3866 18 6 0.0318 -7.2566 -0.5964 19 7 -0.5808 -8.3998 -0.4390 20 14 1.8457 -7.2226 -1.0416 21 1 2.6592 -7.1774 0.1999 22 1 2.1888 -8.4435 -1.8141 23 1 2.1310 -6.0197 -1.8643 24 6 1.3221 -4.8109 0.2355 25 6 1.9961 -3.6303 0.3366 26 1 -0.3634 0.0981 -1.0229 27 1 -0.3633 0.8368 0.5965 28 1 -0.3633 -0.9350 0.4266 29 1 3.1499 1.1384 -0.5139 30 1 1.6084 2.0283 -0.5138 31 1 3.6754 3.2720 0.5303 32 1 2.4793 3.8756 1.7198 33 1 5.2266 3.0141 2.1995 34 1 4.0568 3.6762 3.3730 35 1 2.9755 -0.0900 2.5675 36 1 4.2469 0.4609 1.4294 37 1 -0.3359 -1.5432 -1.0051 38 1 -1.5524 -3.6526 -1.2040 39 1 -0.0938 -9.2307 -0.5536 40 1 1.7788 -5.7260 0.5824 41 1 2.9875 -3.6104 0.7646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270362810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:23 Heat of formation + Delta-G solvation = -61.237806 kcal Electronic energy + Delta-G solvation = -22966.947733 eV Core-core repulsion = 19618.447780 eV Total energy + Delta-G solvation = -3348.499953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40236 -40.19523 -39.02786 -36.75691 -35.70719 -33.97661 -32.38997 -31.78050 -30.38970 -28.10283 -27.98339 -26.24725 -23.69832 -23.43148 -22.71598 -21.58018 -20.51366 -19.60207 -18.34865 -17.74026 -17.25484 -17.17922 -16.74476 -16.05203 -15.95438 -15.76003 -15.51536 -15.11127 -14.73732 -14.62736 -14.40456 -14.08527 -13.92921 -13.72566 -13.67002 -13.25644 -12.99384 -12.71172 -12.58265 -12.52598 -12.30702 -12.00070 -11.96837 -11.78305 -11.52776 -11.50323 -11.02772 -10.71443 -10.55669 -9.73947 -9.57936 -9.47244 -9.04069 -6.63455 0.29354 0.87284 1.21612 1.32630 1.42654 1.94794 2.04577 2.15250 2.65535 2.98992 3.45569 3.56975 3.74601 3.95140 3.96571 4.12620 4.21312 4.25295 4.33368 4.42968 4.45480 4.57106 4.63925 4.67507 4.74618 4.82390 4.86352 4.89719 4.93043 4.95344 4.98704 5.07224 5.17299 5.24755 5.47772 5.58414 5.67847 5.78482 5.85162 5.90434 6.10455 6.26491 6.47680 6.59975 6.71504 7.35484 8.01868 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031193 B = 0.003762 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.411379 B = 7441.350459 C = 7929.389558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.615 5.615 3 C 0.128 3.872 4 C -0.130 4.130 5 H 0.091 0.909 6 C -0.137 4.137 7 C 0.035 3.965 8 O -0.413 6.413 9 C 0.059 3.941 10 C 0.568 3.432 11 O -0.591 6.591 12 C -0.279 4.279 13 C -0.052 4.052 14 C -0.226 4.226 15 C 0.093 3.907 16 C -0.460 4.460 17 H 0.074 0.926 18 C 0.053 3.947 19 N -0.828 5.828 20 Si 0.964 3.036 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.270 4.270 25 C -0.027 4.027 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.168 0.832 38 H 0.121 0.879 39 H 0.299 0.701 40 H 0.100 0.900 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 20.893 0.010 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.347 5.347 3 C 0.006 3.994 4 C -0.150 4.150 5 H 0.109 0.891 6 C -0.175 4.175 7 C -0.041 4.041 8 O -0.333 6.333 9 C -0.017 4.017 10 C 0.362 3.638 11 O -0.474 6.474 12 C -0.283 4.283 13 C -0.069 4.069 14 C -0.245 4.245 15 C 0.090 3.910 16 C -0.488 4.488 17 H 0.092 0.908 18 C -0.165 4.165 19 N -0.452 5.452 20 Si 0.789 3.211 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.182 1.182 24 C -0.289 4.289 25 C -0.046 4.046 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.185 0.815 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.842 20.551 0.263 20.748 hybrid contribution 0.596 -1.018 -0.054 1.181 sum 3.438 19.533 0.209 19.834 Atomic orbital electron populations 1.22648 0.77989 1.04626 1.03048 1.47711 1.08080 1.05058 1.73823 1.21530 0.97904 0.84792 0.95146 1.23111 0.99284 0.95212 0.97354 0.89088 1.22924 0.98203 0.96600 0.99813 1.23391 0.99084 0.84613 0.96987 1.88827 1.84500 1.22625 1.37308 1.23551 0.95305 0.93475 0.89412 1.18431 0.86360 0.84317 0.74729 1.90639 1.15503 1.87956 1.53268 1.19308 0.98377 0.92496 1.18108 1.21805 0.92044 0.98946 0.94153 1.21024 1.02233 0.92481 1.08780 1.18085 0.91350 0.94180 0.87412 1.19729 0.95881 0.90420 1.42782 0.90827 1.26822 1.04130 0.94334 0.91187 1.69576 1.41257 0.99874 1.34508 0.85550 0.77698 0.78326 0.79501 1.18934 1.20046 1.18237 1.20873 0.98943 0.97364 1.11754 1.20527 0.97273 0.92112 0.94678 0.90026 0.89007 0.89969 0.91409 0.86406 0.89064 0.87746 0.92230 0.88307 0.92252 0.92670 0.81501 0.86076 0.88965 0.88245 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 8.67 127.77 1.11 2.20 16 2 N -0.62 -15.88 2.84 -850.44 -2.42 -18.30 16 3 C 0.13 2.58 4.92 86.38 0.42 3.01 16 4 C -0.13 -2.62 3.36 -9.49 -0.03 -2.65 16 5 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 6 C -0.14 -1.95 6.60 31.59 0.21 -1.74 16 7 C 0.04 0.67 7.70 72.36 0.56 1.22 16 8 O -0.41 -11.95 11.52 -148.98 -1.72 -13.66 16 9 C 0.06 1.74 5.67 72.67 0.41 2.15 16 10 C 0.57 20.68 7.10 86.72 0.62 21.30 16 11 O -0.59 -24.86 13.81 -3.99 -0.06 -24.92 16 12 C -0.28 -11.21 5.59 -19.93 -0.11 -11.32 16 13 C -0.05 -1.85 7.48 22.26 0.17 -1.68 16 14 C -0.23 -9.39 9.73 22.47 0.22 -9.17 16 15 C 0.09 4.53 5.16 -21.28 -0.11 4.42 16 16 C -0.46 -24.29 9.60 23.46 0.23 -24.06 16 17 H 0.07 4.07 8.06 -2.91 -0.02 4.04 16 18 C 0.05 2.74 5.47 85.35 0.47 3.21 16 19 N -0.83 -43.10 13.92 21.87 0.30 -42.79 16 20 Si 0.96 42.82 24.41 68.60 1.67 44.50 16 21 H -0.26 -11.43 6.45 99.48 0.64 -10.79 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.26 -11.98 6.88 99.48 0.68 -11.30 16 24 C -0.27 -13.02 7.07 22.47 0.16 -12.86 16 25 C -0.03 -1.21 9.52 22.25 0.21 -1.00 16 26 H 0.08 1.20 7.17 -2.39 -0.02 1.18 16 27 H 0.09 1.18 8.11 -2.39 -0.02 1.16 16 28 H 0.08 1.90 4.97 -2.39 -0.01 1.89 16 29 H 0.07 1.62 7.40 -2.39 -0.02 1.61 16 30 H 0.12 1.44 8.07 -2.39 -0.02 1.42 16 31 H 0.09 1.07 7.86 -2.39 -0.02 1.05 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.86 6.70 -2.39 -0.02 1.84 16 37 H 0.17 4.39 4.10 -2.91 -0.01 4.37 16 38 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.30 13.99 8.29 -92.71 -0.77 13.22 16 40 H 0.10 4.84 4.16 -2.91 -0.01 4.82 16 41 H 0.10 4.56 7.79 -2.91 -0.02 4.54 16 Total: -1.00 -65.21 322.01 3.26 -61.95 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.95 Total: 20.21 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.52 Total: -26.99 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -2.11 Total: -61.09 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.77 Total: -38.58 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.67 Total: 44.50 kcal Total: -65.21 3.26 -61.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270362810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.712 kcal (2) G-P(sol) polarization free energy of solvation -65.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds