Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46930 * 2 1 4 4 C 1.36869 * 119.99571 * 264.81277 * 3 2 1 5 5 H 1.08007 * 120.00061 * 130.80832 * 4 3 2 6 6 C 1.39048 * 120.00207 * 310.80530 * 4 3 2 7 7 N 1.31363 * 120.00152 * 170.07166 * 6 4 3 8 8 Si 1.86796 * 120.00162 * 350.06544 * 6 4 3 9 9 H 1.48493 * 109.47114 * 95.29600 * 8 6 4 10 10 H 1.48501 * 109.47464 * 215.29595 * 8 6 4 11 11 H 1.48505 * 109.46849 * 335.29617 * 8 6 4 12 12 C 1.34774 * 120.00324 * 84.81723 * 3 2 1 13 13 O 1.21595 * 119.99890 * 2.09104 * 12 3 2 14 14 C 1.47718 * 120.00205 * 182.10237 * 12 3 2 15 15 C 1.39675 * 120.14959 * 317.94659 * 14 12 3 16 16 C 1.37907 * 119.84605 * 179.97438 * 15 14 12 17 17 C 1.38397 * 120.15427 * 359.74205 * 16 15 14 18 18 C 1.38357 * 120.30574 * 0.51895 * 17 16 15 19 19 C 1.50694 * 119.92491 * 179.76392 * 18 17 16 20 20 H 1.09004 * 110.98618 * 182.46668 * 19 18 17 21 21 C 1.55309 * 111.12554 * 306.70524 * 19 18 17 22 22 C 1.54381 * 102.24959 * 152.05398 * 21 19 18 23 23 O 1.43234 * 107.59208 * 338.64470 * 22 21 19 24 24 C 1.43644 * 109.97020 * 358.29111 * 23 22 21 25 25 C 1.37955 * 120.14637 * 359.48104 * 18 17 16 26 26 H 1.08994 * 109.46952 * 60.00224 * 1 2 3 27 27 H 1.09000 * 109.46702 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46901 * 299.99848 * 1 2 3 29 29 H 1.08997 * 109.47039 * 239.99667 * 2 1 3 30 30 H 1.09004 * 109.46832 * 119.99787 * 2 1 3 31 31 H 0.97000 * 120.00055 * 180.02562 * 7 6 4 32 32 H 1.08004 * 120.07074 * 0.02562 * 15 14 12 33 33 H 1.08005 * 119.92189 * 180.02562 * 16 15 14 34 34 H 1.08002 * 119.84786 * 180.25106 * 17 16 15 35 35 H 1.08999 * 110.84559 * 33.86632 * 21 19 18 36 36 H 1.08992 * 110.84810 * 270.24365 * 21 19 18 37 37 H 1.08998 * 109.82899 * 219.12996 * 22 21 19 38 38 H 1.09001 * 109.83027 * 98.16121 * 22 21 19 39 39 H 1.09008 * 110.31148 * 143.34587 * 24 23 22 40 40 H 1.09007 * 110.30756 * 265.41046 * 24 23 22 41 41 H 1.08005 * 120.07628 * 180.23431 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3475 1.9906 -1.1805 5 1 1.9630 2.9744 -1.4060 6 6 3.1769 1.3432 -2.0896 7 7 3.3370 1.8339 -3.2976 8 14 4.0636 -0.2241 -1.5931 9 1 3.2699 -1.4011 -2.0288 10 1 5.4005 -0.2622 -2.2385 11 1 4.2253 -0.2549 -0.1172 12 6 2.1436 2.0517 1.1624 13 8 1.8876 1.4981 2.2142 14 6 2.5916 3.4593 1.1585 15 6 3.6341 3.8614 0.3205 16 6 4.0470 5.1773 0.3216 17 6 3.4273 6.0996 1.1466 18 6 2.3976 5.7072 1.9831 19 6 1.7325 6.7176 2.8818 20 1 0.9744 6.2451 3.5065 21 6 2.7791 7.4734 3.7452 22 6 2.0848 8.8307 3.9878 23 8 1.0989 9.0020 2.9630 24 6 1.1307 7.8852 2.0601 25 6 1.9745 4.3941 1.9922 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9153 1.3820 -3.9319 32 1 4.1152 3.1436 -0.3275 33 1 4.8527 5.4896 -0.3263 34 1 3.7520 7.1297 1.1405 35 1 3.7111 7.6070 3.1962 36 1 2.9535 6.9531 4.6870 37 1 2.8177 9.6357 3.9341 38 1 1.6048 8.8309 4.9665 39 1 0.1219 7.6358 1.7310 40 1 1.7631 8.1109 1.2014 41 1 1.1681 4.0898 2.6430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270441820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -53.144218 kcal Electronic energy + Delta-G solvation = -23169.849590 eV Core-core repulsion = 19821.700602 eV Total energy + Delta-G solvation = -3348.148988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.03774 -39.16605 -37.60976 -35.16491 -33.31897 -32.26632 -30.90815 -30.33437 -29.59364 -28.11908 -25.06877 -23.79606 -23.04715 -22.25968 -21.75991 -20.64405 -18.98978 -17.49595 -16.78839 -16.23608 -15.90243 -15.60514 -15.34685 -14.91010 -14.45668 -14.17478 -13.90588 -13.60305 -13.50937 -13.21638 -12.81819 -12.70626 -12.55877 -12.27517 -12.02209 -11.92191 -11.57103 -11.47270 -11.27650 -11.14614 -11.05008 -10.78693 -10.66565 -10.49422 -10.12535 -9.98821 -9.60799 -9.32584 -8.75961 -8.39642 -8.16324 -7.76624 -6.52876 -4.27473 1.59013 1.85916 2.99883 3.14797 3.22856 3.59545 3.82345 4.03916 4.16796 4.39856 4.59179 4.70673 4.86006 4.95535 5.06704 5.17139 5.20203 5.40339 5.47498 5.60589 5.68266 5.69141 5.76269 5.81792 5.85935 5.94022 5.99562 6.06027 6.08380 6.15387 6.35817 6.42505 6.49905 6.58945 6.80826 6.89111 6.90570 7.01177 7.12732 7.34790 7.46452 8.00063 8.18789 8.85320 9.20780 9.57150 10.55529 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.004470 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.548850 B = 6261.877839 C = 6791.400408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 N -0.460 5.460 4 C -0.342 4.342 5 H 0.103 0.897 6 C 0.069 3.931 7 N -0.862 5.862 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.259 1.259 12 C 0.525 3.475 13 O -0.591 6.591 14 C -0.091 4.091 15 C -0.048 4.048 16 C -0.134 4.134 17 C -0.107 4.107 18 C -0.100 4.100 19 C -0.076 4.076 20 H 0.092 0.908 21 C -0.149 4.149 22 C 0.051 3.949 23 O -0.388 6.388 24 C 0.058 3.942 25 C -0.074 4.074 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.276 0.724 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 8.132 8.031 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.180 5.180 4 C -0.469 4.469 5 H 0.121 0.879 6 C -0.139 4.139 7 N -0.497 5.497 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.183 1.183 12 C 0.315 3.685 13 O -0.476 6.476 14 C -0.094 4.094 15 C -0.067 4.067 16 C -0.152 4.152 17 C -0.125 4.125 18 C -0.101 4.101 19 C -0.094 4.094 20 H 0.110 0.890 21 C -0.187 4.187 22 C -0.026 4.026 23 O -0.307 6.307 24 C -0.018 4.018 25 C -0.093 4.093 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.097 7.982 8.298 11.515 hybrid contribution 0.636 -1.061 -0.190 1.251 sum 0.540 6.922 8.108 10.674 Atomic orbital electron populations 1.22004 0.96403 1.00799 1.02258 1.21586 0.94506 0.85426 1.00925 1.43605 1.56956 1.11522 1.05938 1.19044 1.29620 1.04706 0.93547 0.87914 1.25472 0.95552 0.97913 0.94949 1.69648 1.36103 1.39989 1.03971 0.86895 0.79467 0.83297 0.80253 1.19863 1.21205 1.18310 1.18446 0.79779 0.86650 0.83604 1.90638 1.55316 1.70094 1.31567 1.19869 0.97930 0.93965 0.97660 1.21780 0.94554 0.96158 0.94187 1.21076 1.00819 0.93575 0.99774 1.20947 0.96197 0.98991 0.96411 1.19190 0.98269 0.93510 0.99087 1.21720 0.97200 0.94718 0.95779 0.88958 1.23255 0.99135 0.95133 1.01150 1.23120 0.90873 0.96871 0.91719 1.88382 1.57787 1.44020 1.40550 1.23537 1.01762 0.84136 0.92393 1.20960 0.99093 0.91644 0.97610 0.92097 0.92937 0.92721 0.91569 0.91616 0.91343 0.83576 0.86100 0.86755 0.90023 0.89836 0.91592 0.91432 0.89490 0.91571 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 10.20 37.16 0.38 -2.57 16 2 C 0.10 2.13 4.52 -4.04 -0.02 2.11 16 3 N -0.46 -10.89 2.02 -115.93 -0.23 -11.13 16 4 C -0.34 -8.50 6.61 -15.00 -0.10 -8.60 16 5 H 0.10 2.76 7.47 -52.48 -0.39 2.37 16 6 C 0.07 1.73 5.17 -17.45 -0.09 1.64 16 7 N -0.86 -22.70 13.95 55.50 0.77 -21.92 16 8 Si 0.87 19.74 24.86 -169.99 -4.23 15.51 16 9 H -0.27 -5.96 6.91 56.52 0.39 -5.57 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.26 -6.00 7.01 56.52 0.40 -5.60 16 12 C 0.53 12.40 7.25 -12.39 -0.09 12.31 16 13 O -0.59 -14.93 16.60 5.28 0.09 -14.85 16 14 C -0.09 -1.91 5.29 -104.97 -0.55 -2.46 16 15 C -0.05 -0.96 8.10 -39.17 -0.32 -1.28 16 16 C -0.13 -2.21 10.03 -39.64 -0.40 -2.61 16 17 C -0.11 -1.57 8.27 -39.48 -0.33 -1.89 16 18 C -0.10 -1.51 5.01 -104.69 -0.52 -2.03 16 19 C -0.08 -0.93 3.31 -89.53 -0.30 -1.23 16 20 H 0.09 1.11 7.96 -51.93 -0.41 0.70 16 21 C -0.15 -1.54 6.43 -24.78 -0.16 -1.70 16 22 C 0.05 0.51 7.79 37.88 0.30 0.81 16 23 O -0.39 -4.97 11.36 -35.23 -0.40 -5.37 16 24 C 0.06 0.70 7.21 38.18 0.28 0.98 16 25 C -0.07 -1.33 9.30 -39.17 -0.36 -1.70 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.44 4.26 -51.93 -0.22 1.22 16 30 H 0.07 1.42 7.55 -51.93 -0.39 1.03 16 31 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 32 H 0.15 3.17 6.26 -52.48 -0.33 2.84 16 33 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.11 1.38 6.99 -52.49 -0.37 1.01 16 35 H 0.08 0.82 6.75 -51.93 -0.35 0.47 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.07 0.80 7.05 -51.93 -0.37 0.43 16 41 H 0.12 2.11 7.98 -52.48 -0.42 1.69 16 LS Contribution 329.94 15.07 4.97 4.97 Total: -1.00 -28.44 329.94 -7.10 -35.54 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.78 Total: 5.46 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.29 Total: -8.21 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.54 Total: -33.05 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.31 Total: -20.22 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.23 Total: 15.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.44 -7.10 -35.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270441820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.605 kcal (2) G-P(sol) polarization free energy of solvation -28.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds