Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46930 * 2 1 4 4 C 1.36869 * 119.99571 * 264.81277 * 3 2 1 5 5 H 1.08007 * 120.00061 * 130.80832 * 4 3 2 6 6 C 1.39048 * 120.00207 * 310.80530 * 4 3 2 7 7 N 1.31363 * 120.00152 * 170.07166 * 6 4 3 8 8 Si 1.86796 * 120.00162 * 350.06544 * 6 4 3 9 9 H 1.48493 * 109.47114 * 95.29600 * 8 6 4 10 10 H 1.48501 * 109.47464 * 215.29595 * 8 6 4 11 11 H 1.48505 * 109.46849 * 335.29617 * 8 6 4 12 12 C 1.34774 * 120.00324 * 84.81723 * 3 2 1 13 13 O 1.21595 * 119.99890 * 2.09104 * 12 3 2 14 14 C 1.47718 * 120.00205 * 182.10237 * 12 3 2 15 15 C 1.39675 * 120.14959 * 317.94659 * 14 12 3 16 16 C 1.37907 * 119.84605 * 179.97438 * 15 14 12 17 17 C 1.38397 * 120.15427 * 359.74205 * 16 15 14 18 18 C 1.38357 * 120.30574 * 0.51895 * 17 16 15 19 19 C 1.50694 * 119.92491 * 179.76392 * 18 17 16 20 20 H 1.09004 * 110.98618 * 182.46668 * 19 18 17 21 21 C 1.55309 * 111.12554 * 306.70524 * 19 18 17 22 22 C 1.54381 * 102.24959 * 152.05398 * 21 19 18 23 23 O 1.43234 * 107.59208 * 338.64470 * 22 21 19 24 24 C 1.43644 * 109.97020 * 358.29111 * 23 22 21 25 25 C 1.37955 * 120.14637 * 359.48104 * 18 17 16 26 26 H 1.08994 * 109.46952 * 60.00224 * 1 2 3 27 27 H 1.09000 * 109.46702 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46901 * 299.99848 * 1 2 3 29 29 H 1.08997 * 109.47039 * 239.99667 * 2 1 3 30 30 H 1.09004 * 109.46832 * 119.99787 * 2 1 3 31 31 H 0.97000 * 120.00055 * 180.02562 * 7 6 4 32 32 H 1.08004 * 120.07074 * 0.02562 * 15 14 12 33 33 H 1.08005 * 119.92189 * 180.02562 * 16 15 14 34 34 H 1.08002 * 119.84786 * 180.25106 * 17 16 15 35 35 H 1.08999 * 110.84559 * 33.86632 * 21 19 18 36 36 H 1.08992 * 110.84810 * 270.24365 * 21 19 18 37 37 H 1.08998 * 109.82899 * 219.12996 * 22 21 19 38 38 H 1.09001 * 109.83027 * 98.16121 * 22 21 19 39 39 H 1.09008 * 110.31148 * 143.34587 * 24 23 22 40 40 H 1.09007 * 110.30756 * 265.41046 * 24 23 22 41 41 H 1.08005 * 120.07628 * 180.23431 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3475 1.9906 -1.1805 5 1 1.9630 2.9744 -1.4060 6 6 3.1769 1.3432 -2.0896 7 7 3.3370 1.8339 -3.2976 8 14 4.0636 -0.2241 -1.5931 9 1 3.2699 -1.4011 -2.0288 10 1 5.4005 -0.2622 -2.2385 11 1 4.2253 -0.2549 -0.1172 12 6 2.1436 2.0517 1.1624 13 8 1.8876 1.4981 2.2142 14 6 2.5916 3.4593 1.1585 15 6 3.6341 3.8614 0.3205 16 6 4.0470 5.1773 0.3216 17 6 3.4273 6.0996 1.1466 18 6 2.3976 5.7072 1.9831 19 6 1.7325 6.7176 2.8818 20 1 0.9744 6.2451 3.5065 21 6 2.7791 7.4734 3.7452 22 6 2.0848 8.8307 3.9878 23 8 1.0989 9.0020 2.9630 24 6 1.1307 7.8852 2.0601 25 6 1.9745 4.3941 1.9922 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9153 1.3820 -3.9319 32 1 4.1152 3.1436 -0.3275 33 1 4.8527 5.4896 -0.3263 34 1 3.7520 7.1297 1.1405 35 1 3.7111 7.6070 3.1962 36 1 2.9535 6.9531 4.6870 37 1 2.8177 9.6357 3.9341 38 1 1.6048 8.8309 4.9665 39 1 0.1219 7.6358 1.7310 40 1 1.7631 8.1109 1.2014 41 1 1.1681 4.0898 2.6430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270441820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = -69.237968 kcal Electronic energy + Delta-G solvation = -23170.547467 eV Core-core repulsion = 19821.700602 eV Total energy + Delta-G solvation = -3348.846866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38377 -40.54645 -38.97325 -37.04565 -34.50108 -34.15229 -32.43302 -31.55737 -30.88050 -29.24955 -26.97411 -25.36852 -24.27951 -23.37736 -22.98816 -21.97716 -20.70108 -19.08795 -18.04835 -17.71556 -17.34753 -17.13079 -16.64276 -16.15093 -16.04036 -15.66369 -15.33814 -15.05352 -14.75811 -14.51812 -14.44409 -14.08930 -13.98967 -13.85858 -13.59558 -13.19661 -13.04832 -12.80657 -12.64805 -12.49308 -12.40610 -12.19409 -11.97468 -11.87106 -11.73124 -11.61163 -11.19727 -10.60175 -10.47281 -9.82217 -9.65620 -9.51800 -8.48940 -6.25320 0.15405 0.49304 1.18286 1.29759 1.39822 1.89818 2.16199 2.54691 2.78114 2.93160 3.04719 3.62702 3.71320 3.93997 4.00489 4.06476 4.11197 4.22240 4.28440 4.30852 4.34526 4.36029 4.45946 4.54994 4.69334 4.77884 4.80038 4.86189 4.93140 4.95216 5.04679 5.06003 5.13181 5.21078 5.22430 5.50087 5.58594 5.61466 5.67239 6.02264 6.06244 6.09495 6.20336 6.91505 7.30061 7.68743 8.62874 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023874 B = 0.004470 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.548850 B = 6261.877839 C = 6791.400408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.089 3.911 3 N -0.469 5.469 4 C -0.329 4.329 5 H 0.075 0.925 6 C 0.040 3.960 7 N -0.895 5.895 8 Si 0.920 3.080 9 H -0.256 1.256 10 H -0.280 1.280 11 H -0.272 1.272 12 C 0.519 3.481 13 O -0.615 6.615 14 C -0.124 4.124 15 C -0.069 4.069 16 C -0.131 4.131 17 C -0.092 4.092 18 C -0.085 4.085 19 C -0.077 4.077 20 H 0.093 0.907 21 C -0.144 4.144 22 C 0.048 3.952 23 O -0.405 6.405 24 C 0.059 3.941 25 C -0.082 4.082 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.281 0.719 32 H 0.119 0.881 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 9.419 8.910 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 N -0.189 5.189 4 C -0.457 4.457 5 H 0.093 0.907 6 C -0.165 4.165 7 N -0.532 5.532 8 Si 0.746 3.254 9 H -0.182 1.182 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.502 6.502 14 C -0.127 4.127 15 C -0.088 4.088 16 C -0.149 4.149 17 C -0.110 4.110 18 C -0.085 4.085 19 C -0.095 4.095 20 H 0.112 0.888 21 C -0.181 4.181 22 C -0.028 4.028 23 O -0.325 6.325 24 C -0.017 4.017 25 C -0.102 4.102 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.137 0.863 33 H 0.162 0.838 34 H 0.170 0.830 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.302 9.265 9.171 13.039 hybrid contribution 0.493 -1.340 -0.386 1.479 sum 0.795 7.925 8.785 11.858 Atomic orbital electron populations 1.21922 0.94197 1.02892 1.01446 1.21747 0.96461 0.84380 1.00747 1.43737 1.57283 1.12303 1.05605 1.18703 1.29418 1.03816 0.93753 0.90687 1.25864 0.95837 1.00100 0.94735 1.69704 1.37224 1.41436 1.04829 0.86170 0.78992 0.81245 0.79001 1.18157 1.20668 1.19686 1.18968 0.79035 0.87869 0.83163 1.90593 1.56462 1.70998 1.32148 1.19831 0.99666 0.93133 1.00023 1.21585 0.95170 0.97387 0.94619 1.21325 1.01218 0.92279 1.00070 1.21323 0.94816 1.00269 0.94544 1.19448 0.97638 0.92739 0.98711 1.21740 0.97886 0.94173 0.95724 0.88824 1.23261 0.98622 0.94941 1.01266 1.23291 0.90852 0.97139 0.91556 1.88371 1.58816 1.44116 1.41237 1.23515 1.01887 0.83868 0.92423 1.21048 0.99211 0.92627 0.97268 0.92741 0.89405 0.93574 0.91565 0.91811 0.90918 0.86334 0.83838 0.82986 0.89292 0.88808 0.89940 0.90302 0.89570 0.91166 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 10.20 71.98 0.73 -4.71 16 2 C 0.09 3.87 4.52 86.38 0.39 4.26 16 3 N -0.47 -22.80 2.02 -638.94 -1.29 -24.09 16 4 C -0.33 -16.88 6.61 84.10 0.56 -16.33 16 5 H 0.08 4.23 7.47 -2.91 -0.02 4.21 16 6 C 0.04 2.02 5.17 84.96 0.44 2.46 16 7 N -0.90 -47.85 13.95 21.68 0.30 -47.55 16 8 Si 0.92 40.88 24.86 68.60 1.71 42.58 16 9 H -0.26 -10.66 6.91 99.48 0.69 -9.97 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -12.58 7.01 99.48 0.70 -11.88 16 12 C 0.52 25.27 7.25 86.75 0.63 25.90 16 13 O -0.62 -31.90 16.60 -4.01 -0.07 -31.97 16 14 C -0.12 -5.30 5.29 -20.09 -0.11 -5.41 16 15 C -0.07 -2.79 8.10 22.54 0.18 -2.61 16 16 C -0.13 -4.15 10.03 22.23 0.22 -3.92 16 17 C -0.09 -2.43 8.27 22.34 0.18 -2.24 16 18 C -0.09 -2.40 5.01 -19.91 -0.10 -2.50 16 19 C -0.08 -1.69 3.31 -10.09 -0.03 -1.72 16 20 H 0.09 2.07 7.96 -2.38 -0.02 2.05 16 21 C -0.14 -2.46 6.43 31.86 0.20 -2.26 16 22 C 0.05 0.80 7.79 72.45 0.56 1.36 16 23 O -0.41 -9.28 11.36 -148.98 -1.69 -10.97 16 24 C 0.06 1.29 7.21 72.65 0.52 1.82 16 25 C -0.08 -2.97 9.30 22.54 0.21 -2.76 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 2.85 4.26 -2.39 -0.01 2.84 16 30 H 0.06 2.77 7.55 -2.39 -0.02 2.75 16 31 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.12 5.39 6.26 -2.91 -0.02 5.38 16 33 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.15 2.95 6.99 -2.91 -0.02 2.93 16 35 H 0.09 1.41 6.75 -2.39 -0.02 1.39 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.07 1.47 7.05 -2.38 -0.02 1.45 16 41 H 0.12 4.22 7.98 -2.91 -0.02 4.19 16 Total: -1.00 -62.38 329.94 4.56 -57.82 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 1.00 Total: 22.84 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 4.60 Total: -8.67 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -0.99 Total: -71.64 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.76 Total: -42.94 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.71 Total: 42.58 kcal Total: -62.38 4.56 -57.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270441820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.418 kcal (2) G-P(sol) polarization free energy of solvation -62.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds