Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46916 * 2 1 4 4 C 1.36878 * 119.99608 * 80.92275 * 3 2 1 5 5 H 1.08005 * 119.99739 * 216.06231 * 4 3 2 6 6 C 1.39041 * 120.00124 * 36.06835 * 4 3 2 7 7 N 1.31361 * 120.00058 * 29.00391 * 6 4 3 8 8 Si 1.86800 * 119.99925 * 209.01213 * 6 4 3 9 9 H 1.48503 * 109.47506 * 89.99460 * 8 6 4 10 10 H 1.48505 * 109.46919 * 209.99758 * 8 6 4 11 11 H 1.48506 * 109.46891 * 329.99131 * 8 6 4 12 12 C 1.34774 * 120.00285 * 260.92771 * 3 2 1 13 13 O 1.21602 * 120.00112 * 173.53462 * 12 3 2 14 14 C 1.47724 * 119.99942 * 353.53817 * 12 3 2 15 15 C 1.39657 * 120.15260 * 38.19897 * 14 12 3 16 16 C 1.37919 * 119.84726 * 179.74615 * 15 14 12 17 17 C 1.38394 * 120.14997 * 0.55925 * 16 15 14 18 18 C 1.38359 * 120.30499 * 359.69549 * 17 16 15 19 19 C 1.50707 * 119.92349 * 180.02562 * 18 17 16 20 20 H 1.09002 * 110.80242 * 183.65451 * 19 18 17 21 21 C 1.54809 * 110.90878 * 60.02087 * 19 18 17 22 22 C 1.54100 * 104.18829 * 220.92396 * 21 19 18 23 23 O 1.43746 * 107.29347 * 357.96661 * 22 21 19 24 24 C 1.44390 * 106.97541 * 26.51992 * 23 22 21 25 25 C 1.37953 * 120.15033 * 0.02639 * 18 17 16 26 26 H 1.09001 * 109.47718 * 49.35260 * 1 2 3 27 27 H 1.09003 * 109.46766 * 169.34996 * 1 2 3 28 28 H 1.09005 * 109.47295 * 289.34559 * 1 2 3 29 29 H 1.08998 * 109.47151 * 240.01113 * 2 1 3 30 30 H 1.08999 * 109.47506 * 120.00100 * 2 1 3 31 31 H 0.97000 * 120.00052 * 180.02562 * 7 6 4 32 32 H 1.08003 * 120.07467 * 0.02634 * 15 14 12 33 33 H 1.07999 * 119.92631 * 180.27424 * 16 15 14 34 34 H 1.07998 * 119.85023 * 179.72003 * 17 16 15 35 35 H 1.09004 * 110.48555 * 339.59567 * 21 19 18 36 36 H 1.09000 * 110.48600 * 102.24127 * 21 19 18 37 37 H 1.08996 * 109.87920 * 117.39104 * 22 21 19 38 38 H 1.08999 * 109.87512 * 238.40097 * 22 21 19 39 39 H 1.08997 * 110.61569 * 201.43700 * 24 23 22 40 40 H 1.08991 * 110.61812 * 78.43579 * 24 23 22 41 41 H 1.08006 * 120.07421 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0700 2.0887 1.1706 5 1 1.8523 3.1466 1.1722 6 6 2.4030 1.4456 2.3575 7 7 3.1874 0.3922 2.3361 8 14 1.7346 2.0796 3.9826 9 1 0.4386 1.4171 4.2771 10 1 2.7027 1.7776 5.0675 11 1 1.5315 3.5480 3.8951 12 6 2.4164 1.9553 -1.1525 13 8 2.7098 3.1352 -1.1745 14 6 2.4962 1.1512 -2.3892 15 6 1.5311 0.1777 -2.6565 16 6 1.6088 -0.5658 -3.8155 17 6 2.6465 -0.3570 -4.7070 18 6 3.6090 0.6021 -4.4459 19 6 4.7350 0.8227 -5.4231 20 1 5.4388 1.5626 -5.0420 21 6 4.1890 1.2421 -6.8096 22 6 5.0641 0.4639 -7.8113 23 8 6.0341 -0.2733 -7.0485 24 6 5.4550 -0.5111 -5.7474 25 6 3.5402 1.3569 -3.2932 26 1 -0.3634 0.6694 -0.7797 27 1 -0.3633 -1.0100 -0.1899 28 1 -0.3634 0.3404 0.9697 29 1 1.8933 -0.5136 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.4194 -0.0567 3.1641 32 1 0.7233 0.0107 -1.9594 33 1 0.8607 -1.3158 -4.0256 34 1 2.7051 -0.9451 -5.6110 35 1 3.1431 0.9524 -6.9114 36 1 4.3044 2.3161 -6.9561 37 1 4.4454 -0.2239 -8.3876 38 1 5.5680 1.1599 -8.4819 39 1 6.2334 -0.7157 -5.0124 40 1 4.7402 -1.3327 -5.7898 41 1 4.2924 2.1049 -3.0905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270441824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -38.509417 kcal Electronic energy + Delta-G solvation = -23063.723457 eV Core-core repulsion = 19716.209081 eV Total energy + Delta-G solvation = -3347.514376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.16702 -39.14378 -37.44404 -35.16125 -33.47619 -32.10828 -30.63172 -30.21171 -29.66319 -28.25553 -25.40392 -23.60691 -22.73929 -22.21566 -22.17405 -20.71941 -18.94145 -17.08714 -16.70182 -16.43163 -16.18051 -15.44361 -15.32060 -14.98618 -14.50817 -14.35695 -13.83292 -13.64641 -13.45113 -13.33066 -12.76703 -12.65917 -12.56362 -11.94660 -11.85778 -11.74715 -11.56137 -11.33327 -11.26765 -11.11662 -11.02687 -10.69566 -10.54202 -10.49999 -10.36220 -10.11073 -9.81959 -9.09904 -8.61102 -8.46311 -8.21756 -7.54916 -6.45089 -3.98720 1.42753 1.65998 3.12170 3.22515 3.27219 3.64034 3.84357 4.04114 4.29119 4.56210 4.61710 4.79929 4.87694 4.90649 5.00906 5.08863 5.14020 5.24941 5.31545 5.50873 5.57141 5.64212 5.64926 5.70121 5.83778 5.86887 5.88435 5.99828 6.10010 6.19297 6.26601 6.33036 6.40862 6.67030 6.71909 6.77647 6.81526 6.91677 7.12978 7.24468 7.51976 8.19237 8.43537 9.10894 9.31776 9.94790 10.57742 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.003810 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.729949 B = 7347.133873 C = 7619.825474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.077 3.923 3 N -0.423 5.423 4 C -0.317 4.317 5 H 0.096 0.904 6 C 0.044 3.956 7 N -0.850 5.850 8 Si 0.912 3.088 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.486 3.514 13 O -0.580 6.580 14 C -0.090 4.090 15 C -0.118 4.118 16 C -0.127 4.127 17 C -0.118 4.118 18 C -0.087 4.087 19 C -0.078 4.078 20 H 0.094 0.906 21 C -0.149 4.149 22 C 0.047 3.953 23 O -0.381 6.381 24 C 0.054 3.946 25 C -0.071 4.071 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.270 0.730 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.542 -5.821 -13.933 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.047 4.047 3 N -0.140 5.140 4 C -0.444 4.444 5 H 0.113 0.887 6 C -0.163 4.163 7 N -0.486 5.486 8 Si 0.738 3.262 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.276 3.724 13 O -0.464 6.464 14 C -0.094 4.094 15 C -0.136 4.136 16 C -0.145 4.145 17 C -0.136 4.136 18 C -0.088 4.088 19 C -0.097 4.097 20 H 0.112 0.888 21 C -0.187 4.187 22 C -0.030 4.030 23 O -0.300 6.300 24 C -0.022 4.022 25 C -0.090 4.090 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.099 -5.439 -13.832 14.904 hybrid contribution -0.536 0.145 0.972 1.120 sum -1.636 -5.294 -12.860 14.003 Atomic orbital electron populations 1.22185 0.97630 1.00190 1.02313 1.21999 0.92584 0.85826 1.04252 1.43439 1.52842 1.11750 1.06007 1.19425 1.46628 0.95387 0.82995 0.88659 1.25359 0.94339 0.96718 0.99858 1.70043 1.28014 1.21597 1.28941 0.86162 0.78925 0.79903 0.81225 1.20150 1.20974 1.19112 1.18321 0.82156 0.87968 0.84002 1.90614 1.54031 1.15952 1.85851 1.20403 0.95848 0.97040 0.96095 1.22088 0.99585 0.94837 0.97102 1.21001 0.98576 1.00392 0.94493 1.20914 0.94933 0.98305 0.99474 1.19378 0.96403 0.97623 0.95362 1.21652 0.95635 0.98385 0.93994 0.88801 1.23067 1.00561 1.01510 0.93529 1.23161 0.90928 0.94501 0.94415 1.88862 1.40151 1.75387 1.25558 1.23723 0.97764 0.95989 0.84775 1.21035 0.97602 0.98102 0.92269 0.93087 0.92855 0.91921 0.91133 0.88204 0.92027 0.83795 0.86128 0.86609 0.90144 0.90206 0.92514 0.89978 0.88607 0.91643 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 8.86 37.16 0.33 -2.59 16 2 C 0.08 1.65 5.24 -4.04 -0.02 1.62 16 3 N -0.42 -10.75 2.55 -115.93 -0.30 -11.04 16 4 C -0.32 -8.73 8.82 -15.00 -0.13 -8.86 16 5 H 0.10 2.77 7.74 -52.48 -0.41 2.37 16 6 C 0.04 1.15 4.85 -17.46 -0.08 1.06 16 7 N -0.85 -22.60 11.76 55.50 0.65 -21.95 16 8 Si 0.91 20.05 29.64 -169.99 -5.04 15.02 16 9 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 C 0.49 12.36 7.31 -12.39 -0.09 12.27 16 13 O -0.58 -16.76 16.73 5.28 0.09 -16.67 16 14 C -0.09 -1.85 5.36 -104.97 -0.56 -2.41 16 15 C -0.12 -2.00 7.36 -39.17 -0.29 -2.29 16 16 C -0.13 -1.75 10.03 -39.64 -0.40 -2.15 16 17 C -0.12 -1.54 8.19 -39.48 -0.32 -1.87 16 18 C -0.09 -1.27 4.94 -104.68 -0.52 -1.78 16 19 C -0.08 -0.94 3.34 -89.76 -0.30 -1.24 16 20 H 0.09 1.16 7.95 -51.93 -0.41 0.75 16 21 C -0.15 -1.51 6.50 -25.20 -0.16 -1.67 16 22 C 0.05 0.45 7.70 37.73 0.29 0.74 16 23 O -0.38 -4.68 11.52 -35.23 -0.41 -5.09 16 24 C 0.05 0.62 7.10 38.21 0.27 0.89 16 25 C -0.07 -1.29 9.26 -39.17 -0.36 -1.66 16 26 H 0.05 0.88 7.02 -51.93 -0.36 0.51 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.38 4.50 -51.93 -0.23 1.15 16 30 H 0.10 2.34 5.74 -51.93 -0.30 2.05 16 31 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.14 2.37 3.34 -52.48 -0.18 2.20 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.21 7.22 -52.49 -0.38 0.84 16 35 H 0.08 0.79 7.21 -51.93 -0.37 0.41 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.70 6.68 -51.93 -0.35 0.35 16 41 H 0.13 2.37 7.97 -52.48 -0.42 1.95 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -31.42 328.99 -7.90 -39.32 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.50 Total: 5.40 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.35 Total: -9.95 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.36 Total: -32.99 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.32 Total: -21.76 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.04 Total: 15.02 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.42 -7.90 -39.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270441824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.811 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds