Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46916 * 2 1 4 4 C 1.36878 * 119.99608 * 80.92275 * 3 2 1 5 5 H 1.08005 * 119.99739 * 216.06231 * 4 3 2 6 6 C 1.39041 * 120.00124 * 36.06835 * 4 3 2 7 7 N 1.31361 * 120.00058 * 29.00391 * 6 4 3 8 8 Si 1.86800 * 119.99925 * 209.01213 * 6 4 3 9 9 H 1.48503 * 109.47506 * 89.99460 * 8 6 4 10 10 H 1.48505 * 109.46919 * 209.99758 * 8 6 4 11 11 H 1.48506 * 109.46891 * 329.99131 * 8 6 4 12 12 C 1.34774 * 120.00285 * 260.92771 * 3 2 1 13 13 O 1.21602 * 120.00112 * 173.53462 * 12 3 2 14 14 C 1.47724 * 119.99942 * 353.53817 * 12 3 2 15 15 C 1.39657 * 120.15260 * 38.19897 * 14 12 3 16 16 C 1.37919 * 119.84726 * 179.74615 * 15 14 12 17 17 C 1.38394 * 120.14997 * 0.55925 * 16 15 14 18 18 C 1.38359 * 120.30499 * 359.69549 * 17 16 15 19 19 C 1.50707 * 119.92349 * 180.02562 * 18 17 16 20 20 H 1.09002 * 110.80242 * 183.65451 * 19 18 17 21 21 C 1.54809 * 110.90878 * 60.02087 * 19 18 17 22 22 C 1.54100 * 104.18829 * 220.92396 * 21 19 18 23 23 O 1.43746 * 107.29347 * 357.96661 * 22 21 19 24 24 C 1.44390 * 106.97541 * 26.51992 * 23 22 21 25 25 C 1.37953 * 120.15033 * 0.02639 * 18 17 16 26 26 H 1.09001 * 109.47718 * 49.35260 * 1 2 3 27 27 H 1.09003 * 109.46766 * 169.34996 * 1 2 3 28 28 H 1.09005 * 109.47295 * 289.34559 * 1 2 3 29 29 H 1.08998 * 109.47151 * 240.01113 * 2 1 3 30 30 H 1.08999 * 109.47506 * 120.00100 * 2 1 3 31 31 H 0.97000 * 120.00052 * 180.02562 * 7 6 4 32 32 H 1.08003 * 120.07467 * 0.02634 * 15 14 12 33 33 H 1.07999 * 119.92631 * 180.27424 * 16 15 14 34 34 H 1.07998 * 119.85023 * 179.72003 * 17 16 15 35 35 H 1.09004 * 110.48555 * 339.59567 * 21 19 18 36 36 H 1.09000 * 110.48600 * 102.24127 * 21 19 18 37 37 H 1.08996 * 109.87920 * 117.39104 * 22 21 19 38 38 H 1.08999 * 109.87512 * 238.40097 * 22 21 19 39 39 H 1.08997 * 110.61569 * 201.43700 * 24 23 22 40 40 H 1.08991 * 110.61812 * 78.43579 * 24 23 22 41 41 H 1.08006 * 120.07421 * 179.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0700 2.0887 1.1706 5 1 1.8523 3.1466 1.1722 6 6 2.4030 1.4456 2.3575 7 7 3.1874 0.3922 2.3361 8 14 1.7346 2.0796 3.9826 9 1 0.4386 1.4171 4.2771 10 1 2.7027 1.7776 5.0675 11 1 1.5315 3.5480 3.8951 12 6 2.4164 1.9553 -1.1525 13 8 2.7098 3.1352 -1.1745 14 6 2.4962 1.1512 -2.3892 15 6 1.5311 0.1777 -2.6565 16 6 1.6088 -0.5658 -3.8155 17 6 2.6465 -0.3570 -4.7070 18 6 3.6090 0.6021 -4.4459 19 6 4.7350 0.8227 -5.4231 20 1 5.4388 1.5626 -5.0420 21 6 4.1890 1.2421 -6.8096 22 6 5.0641 0.4639 -7.8113 23 8 6.0341 -0.2733 -7.0485 24 6 5.4550 -0.5111 -5.7474 25 6 3.5402 1.3569 -3.2932 26 1 -0.3634 0.6694 -0.7797 27 1 -0.3633 -1.0100 -0.1899 28 1 -0.3634 0.3404 0.9697 29 1 1.8933 -0.5136 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.4194 -0.0567 3.1641 32 1 0.7233 0.0107 -1.9594 33 1 0.8607 -1.3158 -4.0256 34 1 2.7051 -0.9451 -5.6110 35 1 3.1431 0.9524 -6.9114 36 1 4.3044 2.3161 -6.9561 37 1 4.4454 -0.2239 -8.3876 38 1 5.5680 1.1599 -8.4819 39 1 6.2334 -0.7157 -5.0124 40 1 4.7402 -1.3327 -5.7898 41 1 4.2924 2.1049 -3.0905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270441824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -57.814572 kcal Electronic energy + Delta-G solvation = -23064.560591 eV Core-core repulsion = 19716.209081 eV Total energy + Delta-G solvation = -3348.351510 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44803 -40.46329 -38.85241 -37.09876 -34.77496 -33.81901 -31.97265 -31.54066 -31.00844 -29.31062 -27.28891 -24.89294 -24.05445 -23.68885 -23.17478 -21.97073 -20.47323 -18.85547 -18.09047 -17.68813 -17.42748 -16.91807 -16.65151 -16.29377 -16.05950 -15.79288 -15.18431 -15.09768 -14.80545 -14.41791 -14.33628 -13.88388 -13.71709 -13.68159 -13.49393 -13.03291 -12.82987 -12.74598 -12.53672 -12.40753 -12.34080 -12.25889 -12.14005 -11.82816 -11.74683 -11.56168 -11.00736 -10.64517 -10.48403 -9.84738 -9.53336 -9.51706 -8.44899 -6.08993 0.10100 0.40644 1.35192 1.39617 1.51722 2.01239 2.26438 2.72861 2.93851 2.97304 3.07936 3.65427 3.70053 3.87079 3.98613 4.03754 4.10704 4.16836 4.23918 4.32116 4.35467 4.47508 4.54998 4.63011 4.73305 4.77826 4.84676 4.89216 4.94348 4.99710 5.06779 5.07296 5.15385 5.24774 5.37991 5.47337 5.51461 5.54221 5.59752 5.90220 6.02201 6.14435 6.47393 7.09674 7.36438 7.98903 8.57565 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.003810 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.729949 B = 7347.133873 C = 7619.825474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.076 3.924 3 N -0.434 5.434 4 C -0.358 4.358 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.873 5.873 8 Si 0.978 3.022 9 H -0.257 1.257 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.470 3.530 13 O -0.637 6.637 14 C -0.124 4.124 15 C -0.123 4.123 16 C -0.111 4.111 17 C -0.099 4.099 18 C -0.075 4.075 19 C -0.082 4.082 20 H 0.079 0.921 21 C -0.144 4.144 22 C 0.045 3.955 23 O -0.400 6.400 24 C 0.057 3.943 25 C -0.094 4.094 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.277 0.723 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 -8.760 -15.987 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.046 4.046 3 N -0.150 5.150 4 C -0.485 4.485 5 H 0.080 0.920 6 C -0.190 4.190 7 N -0.509 5.509 8 Si 0.801 3.199 9 H -0.181 1.181 10 H -0.200 1.200 11 H -0.200 1.200 12 C 0.261 3.739 13 O -0.526 6.526 14 C -0.127 4.127 15 C -0.141 4.141 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.075 4.075 19 C -0.101 4.101 20 H 0.098 0.902 21 C -0.182 4.182 22 C -0.031 4.031 23 O -0.319 6.319 24 C -0.019 4.019 25 C -0.113 4.113 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.166 0.834 33 H 0.184 0.816 34 H 0.177 0.823 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.560 -8.424 -15.891 18.167 hybrid contribution -0.009 1.035 1.469 1.797 sum -2.569 -7.390 -14.422 16.407 Atomic orbital electron populations 1.22100 0.94661 1.02878 1.01620 1.22172 0.94986 0.83500 1.03958 1.43686 1.52815 1.13045 1.05427 1.19309 1.49419 0.94734 0.85058 0.91988 1.26103 0.93612 0.96764 1.02473 1.70089 1.28118 1.22406 1.30239 0.85189 0.79021 0.78827 0.76865 1.18130 1.19977 1.19985 1.19212 0.80961 0.87869 0.85839 1.90537 1.56370 1.18554 1.87154 1.20099 0.98764 0.98949 0.94927 1.22156 0.98742 0.94374 0.98850 1.21469 0.99191 0.99698 0.92472 1.21414 0.93149 0.96830 1.00335 1.19555 0.97325 0.96759 0.93910 1.21667 0.94866 0.99016 0.94578 0.90250 1.23064 1.01205 1.01873 0.92021 1.23328 0.90764 0.94915 0.94110 1.88850 1.41388 1.75830 1.25859 1.23727 0.97928 0.95620 0.84653 1.20992 0.97203 0.99133 0.93973 0.92834 0.88439 0.93457 0.89287 0.90469 0.91281 0.83392 0.81576 0.82307 0.88988 0.90075 0.90445 0.88895 0.88990 0.89914 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 8.86 71.98 0.64 -4.68 16 2 C 0.08 3.30 5.24 86.38 0.45 3.75 16 3 N -0.43 -23.21 2.55 -638.94 -1.63 -24.84 16 4 C -0.36 -20.92 8.82 84.10 0.74 -20.18 16 5 H 0.06 3.94 7.74 -2.91 -0.02 3.91 16 6 C 0.02 0.85 4.85 84.96 0.41 1.26 16 7 N -0.87 -47.47 11.76 21.68 0.25 -47.21 16 8 Si 0.98 42.03 29.64 68.60 2.03 44.06 16 9 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 C 0.47 25.57 7.31 86.75 0.63 26.20 16 13 O -0.64 -40.17 16.73 -4.04 -0.07 -40.24 16 14 C -0.12 -5.24 5.36 -20.09 -0.11 -5.35 16 15 C -0.12 -3.98 7.36 22.54 0.17 -3.81 16 16 C -0.11 -2.55 10.03 22.23 0.22 -2.33 16 17 C -0.10 -2.14 8.19 22.34 0.18 -1.96 16 18 C -0.08 -2.05 4.94 -19.90 -0.10 -2.15 16 19 C -0.08 -1.87 3.34 -10.24 -0.03 -1.90 16 20 H 0.08 2.01 7.95 -2.39 -0.02 1.99 16 21 C -0.14 -2.51 6.50 31.58 0.21 -2.30 16 22 C 0.05 0.71 7.70 72.35 0.56 1.27 16 23 O -0.40 -8.78 11.52 -148.98 -1.72 -10.50 16 24 C 0.06 1.16 7.10 72.67 0.52 1.67 16 25 C -0.09 -3.55 9.26 22.54 0.21 -3.34 16 26 H 0.05 1.80 7.02 -2.39 -0.02 1.79 16 27 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.09 3.45 4.50 -2.39 -0.01 3.44 16 30 H 0.08 3.69 5.74 -2.39 -0.01 3.67 16 31 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.15 4.59 3.34 -2.91 -0.01 4.58 16 33 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.16 2.20 7.22 -2.91 -0.02 2.18 16 35 H 0.09 1.40 7.21 -2.38 -0.02 1.39 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.08 1.39 6.68 -2.39 -0.02 1.37 16 41 H 0.10 4.16 7.97 -2.91 -0.02 4.14 16 Total: -1.00 -75.16 328.99 4.62 -70.55 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 1.04 Total: 22.05 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.70 Total: -13.86 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -1.37 Total: -72.06 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -1.78 Total: -50.74 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -75.16 4.62 -70.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270441824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.731 kcal (2) G-P(sol) polarization free energy of solvation -75.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds