Wall clock time and date at job start Tue Mar 31 2020 06:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00145 * 2 1 4 4 C 1.50704 * 109.47065 * 270.00054 * 3 2 1 5 5 H 1.08008 * 119.99906 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00143 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00232 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99766 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47026 * 90.00283 * 8 6 4 10 10 H 1.48503 * 109.46773 * 209.99940 * 8 6 4 11 11 H 1.48496 * 109.47116 * 329.99957 * 8 6 4 12 12 C 1.34783 * 120.00090 * 180.02562 * 2 1 3 13 13 O 1.21544 * 120.00176 * 184.29624 * 12 2 1 14 14 C 1.47841 * 119.99565 * 4.29197 * 12 2 1 15 15 C 1.39599 * 120.14964 * 328.13440 * 14 12 2 16 16 C 1.37932 * 119.85569 * 179.97438 * 15 14 12 17 17 C 1.38381 * 120.14435 * 359.74193 * 16 15 14 18 18 C 1.38336 * 120.29052 * 0.51943 * 17 16 15 19 19 C 1.50703 * 119.92213 * 179.76119 * 18 17 16 20 20 H 1.09006 * 110.98405 * 182.46524 * 19 18 17 21 21 C 1.55302 * 111.12887 * 306.70845 * 19 18 17 22 22 C 1.54384 * 102.25391 * 152.05457 * 21 19 18 23 23 O 1.43237 * 107.58789 * 338.64345 * 22 21 19 24 24 C 1.43644 * 109.97313 * 358.29187 * 23 22 21 25 25 C 1.37969 * 120.14664 * 359.47988 * 18 17 16 26 26 H 1.09004 * 109.47073 * 274.48184 * 1 2 3 27 27 H 1.09007 * 109.47267 * 34.47821 * 1 2 3 28 28 H 1.08996 * 109.47384 * 154.47921 * 1 2 3 29 29 H 1.08992 * 109.46971 * 30.00162 * 3 2 1 30 30 H 1.08995 * 109.46779 * 150.00687 * 3 2 1 31 31 H 0.96994 * 119.99892 * 180.02562 * 7 6 4 32 32 H 1.08003 * 120.06575 * 0.02562 * 15 14 12 33 33 H 1.08005 * 119.92726 * 180.02562 * 16 15 14 34 34 H 1.08007 * 119.85145 * 180.27751 * 17 16 15 35 35 H 1.09001 * 110.84855 * 33.86310 * 21 19 18 36 36 H 1.08996 * 110.84889 * 270.24830 * 21 19 18 37 37 H 1.08995 * 109.82723 * 219.13118 * 22 21 19 38 38 H 1.08993 * 109.82620 * 98.15919 * 22 21 19 39 39 H 1.09000 * 110.31301 * 143.34481 * 24 23 22 40 40 H 1.09006 * 110.31029 * 265.51046 * 24 23 22 41 41 H 1.08001 * 120.07459 * 180.23859 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2418 6 6 3.1269 2.8774 -1.6728 7 7 3.3457 3.2573 -2.9128 8 14 3.7352 3.9279 -0.2530 9 1 5.1085 3.5057 0.1224 10 1 3.7511 5.3548 -0.6643 11 1 2.8295 3.7585 0.9116 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1688 0.0783 14 6 1.4027 -2.4457 -0.0969 15 6 0.1257 -2.5628 0.4547 16 6 -0.5559 -3.7582 0.3608 17 6 0.0213 -4.8385 -0.2831 18 6 1.2886 -4.7309 -0.8272 19 6 1.9114 -5.9143 -1.5220 20 1 2.9231 -5.6831 -1.8557 21 6 1.8954 -7.1711 -0.6099 22 6 1.8555 -8.3219 -1.6383 23 8 1.3535 -7.7860 -2.8682 24 6 1.0307 -6.3962 -2.7023 25 6 1.9812 -3.5408 -0.7403 26 1 -0.3633 0.0803 1.0246 27 1 -0.3634 0.8472 -0.5818 28 1 -0.3634 -0.9273 -0.4427 29 1 1.6085 2.0283 0.5138 30 1 3.1499 1.1383 0.5137 31 1 3.8232 4.0828 -3.0900 32 1 -0.3278 -1.7188 0.9532 33 1 -1.5441 -3.8500 0.7868 34 1 -0.5185 -5.7711 -0.3578 35 1 1.0056 -7.1823 0.0195 36 1 2.8006 -7.2228 -0.0048 37 1 1.1952 -9.1127 -1.2827 38 1 2.8598 -8.7173 -1.7899 39 1 1.2743 -5.8404 -3.6078 40 1 -0.0253 -6.2795 -2.4585 41 1 2.9690 -3.4568 -1.1689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270447306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:24 Heat of formation + Delta-G solvation = -36.953029 kcal Electronic energy + Delta-G solvation = -22573.096062 eV Core-core repulsion = 19225.649176 eV Total energy + Delta-G solvation = -3347.446886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46792 -39.45789 -37.86036 -35.15971 -33.70426 -32.53618 -31.10304 -30.57697 -29.05387 -27.95361 -26.34448 -24.00922 -23.28261 -22.42193 -21.93929 -20.81098 -18.85590 -17.20900 -16.97984 -16.69608 -16.45264 -15.74665 -15.61496 -15.13880 -14.80749 -14.35004 -14.13566 -13.94353 -13.81491 -13.35685 -13.08146 -12.93391 -12.64584 -12.45046 -12.36125 -11.92082 -11.73399 -11.64717 -11.56035 -11.35332 -11.04464 -10.92468 -10.73933 -10.53643 -10.18764 -9.78847 -9.58904 -9.20241 -8.90883 -8.67455 -8.61215 -7.77287 -6.11255 -4.10778 1.00163 1.29651 3.18379 3.27604 3.33556 3.35460 3.61977 3.64895 3.98281 4.30890 4.37311 4.42308 4.68818 4.78839 4.81777 4.84037 4.93897 4.98531 5.10263 5.22039 5.25360 5.41709 5.46315 5.50892 5.55072 5.57461 5.67053 5.72493 5.79961 5.84985 5.97886 6.13793 6.29728 6.38971 6.44378 6.66535 6.71384 6.84735 6.91938 7.26000 7.56927 8.14939 8.43206 8.84529 8.92796 9.48374 11.02011 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026392 B = 0.003471 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.669696 B = 8066.000618 C = 8511.344054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.588 5.588 3 C 0.215 3.785 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.548 3.452 13 O -0.537 6.537 14 C -0.113 4.113 15 C -0.104 4.104 16 C -0.127 4.127 17 C -0.102 4.102 18 C -0.086 4.086 19 C -0.082 4.082 20 H 0.098 0.902 21 C -0.149 4.149 22 C 0.050 3.950 23 O -0.385 6.385 24 C 0.059 3.941 25 C -0.058 4.058 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.144 0.856 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 -19.285 6.750 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.319 5.319 3 C 0.094 3.906 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.335 3.665 13 O -0.415 6.415 14 C -0.116 4.116 15 C -0.122 4.122 16 C -0.145 4.145 17 C -0.120 4.120 18 C -0.086 4.086 19 C -0.101 4.101 20 H 0.116 0.884 21 C -0.186 4.186 22 C -0.026 4.026 23 O -0.305 6.305 24 C -0.017 4.017 25 C -0.077 4.077 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.735 -19.203 6.493 22.073 hybrid contribution 0.312 0.880 0.762 1.205 sum -8.423 -18.323 7.255 21.432 Atomic orbital electron populations 1.22311 0.81226 1.03791 1.00515 1.47730 1.06316 1.06956 1.70902 1.19716 0.92584 0.79729 0.98539 1.21324 1.37223 1.07320 0.91176 0.90714 1.24857 0.95168 0.97303 0.95634 1.69896 1.41308 1.23581 1.18663 0.86839 0.80177 0.79746 0.82869 1.19835 1.21010 1.19040 1.18193 0.87162 0.83385 0.77783 1.90744 1.13499 1.87080 1.50157 1.20170 0.95225 0.94993 1.01192 1.21987 0.93472 0.98312 0.98468 1.21054 1.00290 0.92800 1.00388 1.21069 0.94649 0.98740 0.97527 1.19383 0.94893 0.94146 1.00214 1.21816 1.00449 0.92792 0.94996 0.88398 1.23257 1.03886 0.93224 0.98253 1.23135 0.99300 0.96091 0.84102 1.88407 1.84947 1.24156 1.32957 1.23523 0.98336 0.81534 0.98350 1.21133 0.99619 0.90741 0.96174 0.93128 0.90674 0.90261 0.94996 0.94271 0.92497 0.83828 0.85545 0.86039 0.90088 0.89616 0.91439 0.91192 0.89219 0.91704 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 8.80 59.84 0.53 1.52 16 2 N -0.59 -12.33 2.86 -184.08 -0.53 -12.85 16 3 C 0.21 5.29 4.28 -5.19 -0.02 5.26 16 4 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 5 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 8 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 12 C 0.55 11.62 7.44 -12.33 -0.09 11.53 16 13 O -0.54 -13.54 16.31 5.33 0.09 -13.46 16 14 C -0.11 -1.84 5.47 -104.97 -0.57 -2.42 16 15 C -0.10 -1.32 7.44 -39.19 -0.29 -1.61 16 16 C -0.13 -1.30 10.03 -39.64 -0.40 -1.70 16 17 C -0.10 -1.02 8.26 -39.49 -0.33 -1.35 16 18 C -0.09 -1.00 5.01 -104.68 -0.52 -1.53 16 19 C -0.08 -0.81 3.31 -89.52 -0.30 -1.11 16 20 H 0.10 1.00 7.96 -51.93 -0.41 0.58 16 21 C -0.15 -1.20 6.43 -24.79 -0.16 -1.36 16 22 C 0.05 0.42 7.79 37.88 0.30 0.71 16 23 O -0.39 -4.26 11.36 -35.23 -0.40 -4.66 16 24 C 0.06 0.58 7.21 38.19 0.28 0.86 16 25 C -0.06 -0.86 9.24 -39.19 -0.36 -1.22 16 26 H 0.05 0.63 7.44 -51.93 -0.39 0.24 16 27 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 28 H 0.08 1.06 4.72 -51.93 -0.24 0.82 16 29 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 30 H 0.04 1.03 6.79 -51.93 -0.35 0.68 16 31 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.14 1.61 4.80 -52.48 -0.25 1.35 16 33 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.12 0.95 6.99 -52.48 -0.37 0.58 16 35 H 0.08 0.59 6.75 -51.93 -0.35 0.24 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.59 7.04 -51.93 -0.37 0.23 16 41 H 0.13 2.08 7.88 -52.49 -0.41 1.67 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -34.73 331.44 -7.77 -42.50 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.64 Total: -0.44 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.39 Total: -6.07 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.25 Total: -39.73 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.31 Total: -18.11 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.73 -7.77 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270447306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.545 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds