Wall clock time and date at job start Tue Mar 31 2020 06:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00145 * 2 1 4 4 C 1.50704 * 109.47065 * 270.00054 * 3 2 1 5 5 H 1.08008 * 119.99906 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00143 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00232 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99766 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47026 * 90.00283 * 8 6 4 10 10 H 1.48503 * 109.46773 * 209.99940 * 8 6 4 11 11 H 1.48496 * 109.47116 * 329.99957 * 8 6 4 12 12 C 1.34783 * 120.00090 * 180.02562 * 2 1 3 13 13 O 1.21544 * 120.00176 * 184.29624 * 12 2 1 14 14 C 1.47841 * 119.99565 * 4.29197 * 12 2 1 15 15 C 1.39599 * 120.14964 * 328.13440 * 14 12 2 16 16 C 1.37932 * 119.85569 * 179.97438 * 15 14 12 17 17 C 1.38381 * 120.14435 * 359.74193 * 16 15 14 18 18 C 1.38336 * 120.29052 * 0.51943 * 17 16 15 19 19 C 1.50703 * 119.92213 * 179.76119 * 18 17 16 20 20 H 1.09006 * 110.98405 * 182.46524 * 19 18 17 21 21 C 1.55302 * 111.12887 * 306.70845 * 19 18 17 22 22 C 1.54384 * 102.25391 * 152.05457 * 21 19 18 23 23 O 1.43237 * 107.58789 * 338.64345 * 22 21 19 24 24 C 1.43644 * 109.97313 * 358.29187 * 23 22 21 25 25 C 1.37969 * 120.14664 * 359.47988 * 18 17 16 26 26 H 1.09004 * 109.47073 * 274.48184 * 1 2 3 27 27 H 1.09007 * 109.47267 * 34.47821 * 1 2 3 28 28 H 1.08996 * 109.47384 * 154.47921 * 1 2 3 29 29 H 1.08992 * 109.46971 * 30.00162 * 3 2 1 30 30 H 1.08995 * 109.46779 * 150.00687 * 3 2 1 31 31 H 0.96994 * 119.99892 * 180.02562 * 7 6 4 32 32 H 1.08003 * 120.06575 * 0.02562 * 15 14 12 33 33 H 1.08005 * 119.92726 * 180.02562 * 16 15 14 34 34 H 1.08007 * 119.85145 * 180.27751 * 17 16 15 35 35 H 1.09001 * 110.84855 * 33.86310 * 21 19 18 36 36 H 1.08996 * 110.84889 * 270.24830 * 21 19 18 37 37 H 1.08995 * 109.82723 * 219.13118 * 22 21 19 38 38 H 1.08993 * 109.82620 * 98.15919 * 22 21 19 39 39 H 1.09000 * 110.31301 * 143.34481 * 24 23 22 40 40 H 1.09006 * 110.31029 * 265.51046 * 24 23 22 41 41 H 1.08001 * 120.07459 * 180.23859 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2418 6 6 3.1269 2.8774 -1.6728 7 7 3.3457 3.2573 -2.9128 8 14 3.7352 3.9279 -0.2530 9 1 5.1085 3.5057 0.1224 10 1 3.7511 5.3548 -0.6643 11 1 2.8295 3.7585 0.9116 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1688 0.0783 14 6 1.4027 -2.4457 -0.0969 15 6 0.1257 -2.5628 0.4547 16 6 -0.5559 -3.7582 0.3608 17 6 0.0213 -4.8385 -0.2831 18 6 1.2886 -4.7309 -0.8272 19 6 1.9114 -5.9143 -1.5220 20 1 2.9231 -5.6831 -1.8557 21 6 1.8954 -7.1711 -0.6099 22 6 1.8555 -8.3219 -1.6383 23 8 1.3535 -7.7860 -2.8682 24 6 1.0307 -6.3962 -2.7023 25 6 1.9812 -3.5408 -0.7403 26 1 -0.3633 0.0803 1.0246 27 1 -0.3634 0.8472 -0.5818 28 1 -0.3634 -0.9273 -0.4427 29 1 1.6085 2.0283 0.5138 30 1 3.1499 1.1383 0.5137 31 1 3.8232 4.0828 -3.0900 32 1 -0.3278 -1.7188 0.9532 33 1 -1.5441 -3.8500 0.7868 34 1 -0.5185 -5.7711 -0.3578 35 1 1.0056 -7.1823 0.0195 36 1 2.8006 -7.2228 -0.0048 37 1 1.1952 -9.1127 -1.2827 38 1 2.8598 -8.7173 -1.7899 39 1 1.2743 -5.8404 -3.6078 40 1 -0.0253 -6.2795 -2.4585 41 1 2.9690 -3.4568 -1.1689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270447306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:24 Heat of formation + Delta-G solvation = -60.663653 kcal Electronic energy + Delta-G solvation = -22574.124232 eV Core-core repulsion = 19225.649176 eV Total energy + Delta-G solvation = -3348.475056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56719 -40.56446 -39.01235 -36.84980 -35.00250 -34.32000 -32.21945 -31.49438 -30.38152 -29.21939 -27.76600 -25.49845 -24.31906 -23.39682 -23.06380 -21.89660 -20.23610 -19.18785 -18.21409 -17.67602 -17.64368 -17.06081 -16.70672 -16.49681 -15.94138 -15.88538 -15.34601 -15.15414 -14.68608 -14.49673 -14.38574 -14.31669 -13.92780 -13.79687 -13.68420 -13.47260 -13.00551 -12.74859 -12.60438 -12.48598 -12.43034 -12.21083 -12.04259 -11.80325 -11.78613 -11.66650 -10.87252 -10.80996 -10.50960 -9.95969 -9.64052 -9.47215 -8.37734 -6.44170 -0.05661 0.33901 1.30843 1.35570 1.44063 1.79486 2.23192 2.28543 2.75827 2.91944 2.96356 3.50530 3.55838 3.68676 3.93987 3.98388 4.08182 4.13577 4.20883 4.27958 4.30555 4.42055 4.55061 4.56514 4.68091 4.75980 4.81417 4.86838 4.88866 4.90273 4.94254 5.00931 5.01843 5.15387 5.38043 5.39142 5.41452 5.51626 5.54910 5.92933 6.01586 6.18586 6.56260 6.57456 7.14205 7.28492 8.79332 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026392 B = 0.003471 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.669696 B = 8066.000618 C = 8511.344054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.598 5.598 3 C 0.222 3.778 4 C -0.542 4.542 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.944 5.944 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.235 1.235 12 C 0.537 3.463 13 O -0.597 6.597 14 C -0.142 4.142 15 C -0.102 4.102 16 C -0.111 4.111 17 C -0.088 4.088 18 C -0.079 4.079 19 C -0.085 4.085 20 H 0.082 0.918 21 C -0.141 4.141 22 C 0.046 3.954 23 O -0.407 6.407 24 C 0.060 3.940 25 C -0.082 4.082 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.270 0.730 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.159 0.841 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 -20.786 9.358 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.327 5.327 3 C 0.100 3.900 4 C -0.581 4.581 5 H 0.044 0.956 6 C -0.187 4.187 7 N -0.584 5.584 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.158 1.158 12 C 0.327 3.673 13 O -0.479 6.479 14 C -0.145 4.145 15 C -0.120 4.120 16 C -0.129 4.129 17 C -0.106 4.106 18 C -0.080 4.080 19 C -0.104 4.104 20 H 0.101 0.899 21 C -0.178 4.178 22 C -0.030 4.030 23 O -0.327 6.327 24 C -0.016 4.016 25 C -0.102 4.102 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.179 0.821 33 H 0.189 0.811 34 H 0.176 0.824 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.843 -20.723 9.106 25.546 hybrid contribution 1.215 1.200 -0.155 1.715 sum -10.627 -19.523 8.950 23.963 Atomic orbital electron populations 1.22677 0.77750 1.04633 1.03226 1.47837 1.08593 1.05712 1.70556 1.19403 0.92904 0.82159 0.95508 1.21546 1.37295 1.06981 0.92264 0.95604 1.25890 0.95098 0.98874 0.98833 1.70050 1.42456 1.24530 1.21372 0.85674 0.79574 0.77722 0.79731 1.20239 1.19726 1.15820 1.19082 0.86895 0.85080 0.76275 1.90683 1.16231 1.88145 1.52887 1.19876 0.97111 0.92754 1.04717 1.22170 0.91707 1.00273 0.97803 1.21532 1.01482 0.91160 0.98706 1.21523 0.93462 1.00240 0.95328 1.19481 0.95534 0.93033 0.99912 1.21800 0.99723 0.93171 0.95706 0.89938 1.23254 1.04959 0.91635 0.97958 1.23300 0.99995 0.96455 0.83239 1.88384 1.85246 1.24461 1.34582 1.23530 0.98993 0.81215 0.97874 1.21055 0.99211 0.92277 0.97618 0.88920 0.91602 0.88099 0.92469 0.96188 0.92123 0.82061 0.81100 0.82399 0.88384 0.89190 0.89508 0.90891 0.90116 0.90140 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.69 8.80 127.77 1.12 2.82 16 2 N -0.60 -25.42 2.86 -854.58 -2.44 -27.86 16 3 C 0.22 11.13 4.28 85.63 0.37 11.50 16 4 C -0.54 -32.77 9.94 25.60 0.25 -32.52 16 5 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 6 C 0.01 0.68 5.47 84.65 0.46 1.14 16 7 N -0.94 -60.53 13.96 21.45 0.30 -60.23 16 8 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 12 C 0.54 23.84 7.44 86.78 0.65 24.48 16 13 O -0.60 -32.40 16.31 -3.85 -0.06 -32.46 16 14 C -0.14 -4.68 5.47 -20.09 -0.11 -4.79 16 15 C -0.10 -2.27 7.44 22.53 0.17 -2.10 16 16 C -0.11 -1.70 10.03 22.23 0.22 -1.48 16 17 C -0.09 -1.38 8.26 22.33 0.18 -1.19 16 18 C -0.08 -1.74 5.01 -19.90 -0.10 -1.84 16 19 C -0.09 -1.61 3.31 -10.08 -0.03 -1.65 16 20 H 0.08 1.79 7.96 -2.38 -0.02 1.77 16 21 C -0.14 -1.91 6.43 31.85 0.20 -1.71 16 22 C 0.05 0.66 7.79 72.45 0.56 1.22 16 23 O -0.41 -8.34 11.36 -148.98 -1.69 -10.04 16 24 C 0.06 1.10 7.21 72.65 0.52 1.63 16 25 C -0.08 -2.57 9.24 22.53 0.21 -2.36 16 26 H 0.09 1.93 7.44 -2.38 -0.02 1.92 16 27 H 0.07 2.03 8.11 -2.38 -0.02 2.01 16 28 H 0.10 2.49 4.72 -2.39 -0.01 2.47 16 29 H 0.06 2.56 7.13 -2.39 -0.02 2.55 16 30 H 0.02 1.08 6.79 -2.39 -0.02 1.06 16 31 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 32 H 0.16 2.95 4.80 -2.91 -0.01 2.94 16 33 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.16 1.44 6.99 -2.91 -0.02 1.42 16 35 H 0.10 1.01 6.75 -2.39 -0.02 0.99 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.22 7.04 -2.38 -0.02 1.20 16 41 H 0.10 3.67 7.88 -2.91 -0.02 3.65 16 Total: -1.00 -82.85 331.44 3.65 -79.19 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.98 Total: 11.49 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 4.69 Total: -6.84 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -2.14 Total: -88.09 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -1.75 Total: -42.50 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -82.85 3.65 -79.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270447306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.529 kcal (2) G-P(sol) polarization free energy of solvation -82.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds