Wall clock time and date at job start Tue Mar 31 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99699 * 2 1 4 4 C 1.52995 * 112.84848 * 295.19469 * 3 2 1 5 5 N 1.46500 * 109.47564 * 289.10443 * 4 3 2 6 6 C 1.34779 * 120.00238 * 185.18013 * 5 4 3 7 7 O 1.21583 * 119.99702 * 359.73114 * 6 5 4 8 8 C 1.47638 * 119.99960 * 179.97438 * 6 5 4 9 9 C 1.40012 * 119.89448 * 359.45615 * 8 6 5 10 10 C 1.36329 * 120.10707 * 179.71630 * 9 8 6 11 11 C 1.40889 * 119.88902 * 0.55287 * 10 9 8 12 12 C 1.41100 * 120.10581 * 179.69725 * 11 10 9 13 13 H 1.07999 * 120.00442 * 207.35324 * 12 11 10 14 14 C 1.40230 * 120.00005 * 27.34556 * 12 11 10 15 15 N 1.30645 * 119.99557 * 13.12522 * 14 12 11 16 16 Si 1.86800 * 120.00367 * 193.12537 * 14 12 11 17 17 H 1.48493 * 109.46967 * 60.00011 * 16 14 12 18 18 H 1.48496 * 109.47027 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46819 * 300.00085 * 16 14 12 20 20 C 1.40897 * 119.79179 * 359.72004 * 11 10 9 21 21 C 1.36318 * 119.89296 * 0.02562 * 20 11 10 22 22 C 1.53774 * 113.69404 * 66.46899 * 3 2 1 23 23 C 1.53781 * 87.08499 * 89.12570 * 22 3 2 24 24 C 1.53787 * 113.61230 * 164.00649 * 3 2 1 25 25 H 1.09000 * 109.47295 * 305.52198 * 1 2 3 26 26 H 1.08998 * 109.47474 * 65.52781 * 1 2 3 27 27 H 1.09007 * 109.47020 * 185.52834 * 1 2 3 28 28 H 1.09000 * 109.47289 * 169.10669 * 4 3 2 29 29 H 1.09000 * 109.47241 * 49.10809 * 4 3 2 30 30 H 0.97006 * 119.99900 * 5.18625 * 5 4 3 31 31 H 1.07998 * 119.95027 * 359.97438 * 9 8 6 32 32 H 1.08000 * 120.05716 * 180.25335 * 10 9 8 33 33 H 0.97000 * 119.99622 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.05073 * 179.97438 * 20 11 10 35 35 H 1.07997 * 119.94823 * 179.97438 * 21 20 11 36 36 H 1.09005 * 113.61465 * 203.67382 * 22 3 2 37 37 H 1.08998 * 113.61423 * 334.57584 * 22 3 2 38 38 H 1.09001 * 113.61675 * 270.88911 * 23 22 3 39 39 H 1.08998 * 113.69504 * 139.98733 * 23 22 3 40 40 H 1.09001 * 113.61615 * 25.34143 * 24 3 2 41 41 H 1.09001 * 113.61468 * 156.16838 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7034 2.0923 -1.2758 5 7 2.4467 1.5130 -2.3975 6 6 2.4138 2.1076 -3.6066 7 8 1.7632 3.1221 -3.7676 8 6 3.1633 1.5241 -4.7368 9 6 3.9168 0.3593 -4.5473 10 6 4.6059 -0.1864 -5.5893 11 6 4.5684 0.4301 -6.8556 12 6 5.2850 -0.1273 -7.9357 13 1 5.6319 0.5068 -8.7383 14 6 5.5471 -1.5045 -7.9671 15 7 4.9214 -2.3072 -7.1480 16 14 6.7908 -2.1913 -9.1798 17 1 8.1196 -1.5790 -8.9263 18 1 6.8838 -3.6639 -9.0129 19 1 6.3571 -1.8770 -10.5650 20 6 3.8133 1.6053 -7.0399 21 6 3.1233 2.1407 -5.9932 22 6 1.7478 2.0986 1.2910 23 6 3.0353 1.4676 1.8471 24 6 3.4981 1.3173 0.3883 25 1 -0.3634 0.5971 0.8364 26 1 -0.3634 0.4257 -0.9353 27 1 -0.3633 -1.0230 0.0990 28 1 2.0006 3.1324 -1.1415 29 1 0.6347 2.0439 -1.4844 30 1 2.9625 0.7014 -2.2700 31 1 3.9488 -0.1099 -3.5751 32 1 5.1836 -1.0872 -5.4433 33 1 5.1024 -3.2599 -7.1699 34 1 3.7819 2.0816 -8.0087 35 1 2.5446 3.0417 -6.1334 36 1 1.8122 3.1789 1.1605 37 1 0.8461 1.7880 1.8187 38 1 2.8719 0.5163 2.3535 39 1 3.6452 2.1580 2.4297 40 1 4.0094 0.3759 0.1872 41 1 4.0413 2.1833 0.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272458141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:54 Heat of formation + Delta-G solvation = -48.513361 kcal Electronic energy + Delta-G solvation = -22525.363896 eV Core-core repulsion = 19177.415717 eV Total energy + Delta-G solvation = -3347.948179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.32439 -38.77640 -37.03552 -35.72289 -33.87086 -33.81375 -30.35974 -29.42593 -28.02178 -27.23532 -25.82746 -25.39056 -22.82933 -21.65271 -20.86650 -19.72484 -19.43559 -17.51172 -17.19044 -16.40026 -15.76963 -15.55621 -15.34202 -14.90669 -14.58169 -14.28913 -14.00209 -13.83379 -13.50160 -13.14132 -12.72017 -12.55029 -12.44388 -12.06184 -11.88935 -11.87238 -11.54821 -11.36324 -11.23784 -11.18991 -10.99389 -10.96555 -10.60903 -10.29677 -10.02062 -9.60646 -9.52291 -9.36870 -8.93757 -8.56163 -7.69747 -7.48883 -6.96834 -4.59163 2.25019 2.95200 2.96290 2.99597 3.05135 3.42494 3.76468 3.79619 3.90257 4.40064 4.48254 4.60022 4.62645 4.64397 5.11618 5.19648 5.30319 5.49856 5.50824 5.54737 5.58039 5.61168 5.68530 5.76086 5.86431 6.04777 6.07963 6.10220 6.14573 6.33401 6.79023 6.85967 6.93854 7.06361 7.11919 7.15857 7.46386 7.67090 7.81863 7.88125 8.09938 8.27548 8.42937 8.65862 8.77378 9.09239 9.94781 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.003441 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.890176 B = 8134.843368 C = 8702.762613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.076 3.924 4 C 0.112 3.888 5 N -0.734 5.734 6 C 0.571 3.429 7 O -0.579 6.579 8 C -0.280 4.280 9 C -0.063 4.063 10 C -0.174 4.174 11 C 0.129 3.871 12 C -0.445 4.445 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.778 5.778 16 Si 0.916 3.084 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.263 1.263 20 C -0.237 4.237 21 C -0.024 4.024 22 C -0.159 4.159 23 C -0.134 4.134 24 C -0.123 4.123 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.401 0.599 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.286 0.714 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 1.342 13.881 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.277 6.277 3 C 0.036 3.964 4 C -0.013 4.013 5 N -0.387 5.387 6 C 0.365 3.635 7 O -0.461 6.461 8 C -0.285 4.285 9 C -0.083 4.083 10 C -0.193 4.193 11 C 0.126 3.874 12 C -0.474 4.474 13 H 0.101 0.899 14 C -0.147 4.147 15 N -0.402 5.402 16 Si 0.739 3.261 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.187 1.187 20 C -0.256 4.256 21 C -0.044 4.044 22 C -0.197 4.197 23 C -0.171 4.171 24 C -0.160 4.160 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.236 0.764 31 H 0.107 0.893 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.111 1.623 13.839 14.277 hybrid contribution 0.370 -0.682 -0.465 0.905 sum -2.741 0.941 13.374 13.685 Atomic orbital electron populations 1.22775 0.81080 1.02674 1.00433 1.87927 1.19787 1.25221 1.94731 1.22861 0.96043 0.84356 0.93154 1.21587 0.96906 0.97219 0.85553 1.45767 1.52953 1.30502 1.09473 1.18613 0.79807 0.82830 0.82205 1.90624 1.45063 1.26189 1.84228 1.18921 1.12837 1.02732 0.93993 1.20508 0.96324 0.94101 0.97333 1.21025 1.03976 1.02314 0.91987 1.17796 0.87365 0.89877 0.92365 1.19801 1.29087 0.92704 1.05759 0.89853 1.26076 0.95147 0.97264 0.96251 1.69716 1.32845 1.05643 1.31985 0.86233 0.81063 0.77974 0.80797 1.18553 1.20078 1.18735 1.20751 1.05249 1.01980 0.97648 1.20364 0.95607 0.96728 0.91653 1.23483 0.99155 1.00466 0.96611 1.22762 0.96740 1.01191 0.96407 1.22976 0.93576 1.03635 0.95855 0.93870 0.93536 0.89505 0.90823 0.92208 0.76367 0.89256 0.86004 0.90268 0.88378 0.88135 0.88927 0.90790 0.89797 0.91165 0.90137 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.55 101.05 1.07 1.34 16 2 O -0.36 -4.57 10.56 -35.23 -0.37 -4.94 16 3 C 0.08 0.89 0.73 -89.81 -0.07 0.83 16 4 C 0.11 1.63 5.11 -4.04 -0.02 1.61 16 5 N -0.73 -12.76 5.31 -61.32 -0.33 -13.09 16 6 C 0.57 12.39 7.76 -12.42 -0.10 12.30 16 7 O -0.58 -13.98 16.32 5.29 0.09 -13.89 16 8 C -0.28 -6.52 5.89 -104.73 -0.62 -7.14 16 9 C -0.06 -1.43 9.47 -39.60 -0.38 -1.81 16 10 C -0.17 -4.31 8.61 -39.27 -0.34 -4.65 16 11 C 0.13 3.32 5.56 -106.80 -0.59 2.73 16 12 C -0.45 -11.19 9.05 -37.75 -0.34 -11.53 16 13 H 0.08 1.99 7.88 -52.49 -0.41 1.58 16 14 C 0.07 1.72 5.22 -17.31 -0.09 1.63 16 15 N -0.78 -18.89 10.86 55.56 0.60 -18.29 16 16 Si 0.92 17.48 29.58 -169.99 -5.03 12.45 16 17 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 18 H -0.28 -5.13 7.11 56.52 0.40 -4.72 16 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 20 C -0.24 -5.79 9.73 -39.27 -0.38 -6.18 16 21 C -0.02 -0.58 9.52 -39.61 -0.38 -0.96 16 22 C -0.16 -1.48 7.18 -25.92 -0.19 -1.66 16 23 C -0.13 -1.20 8.02 -25.91 -0.21 -1.40 16 24 C -0.12 -1.32 7.06 -25.91 -0.18 -1.50 16 25 H 0.04 0.37 6.61 -51.93 -0.34 0.03 16 26 H 0.05 0.52 6.86 -51.93 -0.36 0.17 16 27 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 28 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 29 H 0.06 0.90 6.66 -51.93 -0.35 0.56 16 30 H 0.40 6.58 6.28 -40.82 -0.26 6.32 16 31 H 0.09 1.75 6.37 -52.49 -0.33 1.41 16 32 H 0.12 3.06 6.18 -52.49 -0.32 2.74 16 33 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 34 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 35 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 36 H 0.09 0.79 7.97 -51.93 -0.41 0.38 16 37 H 0.07 0.63 6.75 -51.93 -0.35 0.28 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -28.84 337.58 -8.38 -37.22 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.62 Total: 11.84 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -2.81 Total: -16.40 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.28 Total: -31.38 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.29 Total: -18.83 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.84 -8.38 -37.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272458141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.293 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds