Wall clock time and date at job start Tue Mar 31 2020 06:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99699 * 2 1 4 4 C 1.52995 * 112.84848 * 295.19469 * 3 2 1 5 5 N 1.46500 * 109.47564 * 289.10443 * 4 3 2 6 6 C 1.34779 * 120.00238 * 185.18013 * 5 4 3 7 7 O 1.21583 * 119.99702 * 359.73114 * 6 5 4 8 8 C 1.47638 * 119.99960 * 179.97438 * 6 5 4 9 9 C 1.40012 * 119.89448 * 359.45615 * 8 6 5 10 10 C 1.36329 * 120.10707 * 179.71630 * 9 8 6 11 11 C 1.40889 * 119.88902 * 0.55287 * 10 9 8 12 12 C 1.41100 * 120.10581 * 179.69725 * 11 10 9 13 13 H 1.07999 * 120.00442 * 207.35324 * 12 11 10 14 14 C 1.40230 * 120.00005 * 27.34556 * 12 11 10 15 15 N 1.30645 * 119.99557 * 13.12522 * 14 12 11 16 16 Si 1.86800 * 120.00367 * 193.12537 * 14 12 11 17 17 H 1.48493 * 109.46967 * 60.00011 * 16 14 12 18 18 H 1.48496 * 109.47027 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46819 * 300.00085 * 16 14 12 20 20 C 1.40897 * 119.79179 * 359.72004 * 11 10 9 21 21 C 1.36318 * 119.89296 * 0.02562 * 20 11 10 22 22 C 1.53774 * 113.69404 * 66.46899 * 3 2 1 23 23 C 1.53781 * 87.08499 * 89.12570 * 22 3 2 24 24 C 1.53787 * 113.61230 * 164.00649 * 3 2 1 25 25 H 1.09000 * 109.47295 * 305.52198 * 1 2 3 26 26 H 1.08998 * 109.47474 * 65.52781 * 1 2 3 27 27 H 1.09007 * 109.47020 * 185.52834 * 1 2 3 28 28 H 1.09000 * 109.47289 * 169.10669 * 4 3 2 29 29 H 1.09000 * 109.47241 * 49.10809 * 4 3 2 30 30 H 0.97006 * 119.99900 * 5.18625 * 5 4 3 31 31 H 1.07998 * 119.95027 * 359.97438 * 9 8 6 32 32 H 1.08000 * 120.05716 * 180.25335 * 10 9 8 33 33 H 0.97000 * 119.99622 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.05073 * 179.97438 * 20 11 10 35 35 H 1.07997 * 119.94823 * 179.97438 * 21 20 11 36 36 H 1.09005 * 113.61465 * 203.67382 * 22 3 2 37 37 H 1.08998 * 113.61423 * 334.57584 * 22 3 2 38 38 H 1.09001 * 113.61675 * 270.88911 * 23 22 3 39 39 H 1.08998 * 113.69504 * 139.98733 * 23 22 3 40 40 H 1.09001 * 113.61615 * 25.34143 * 24 3 2 41 41 H 1.09001 * 113.61468 * 156.16838 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7034 2.0923 -1.2758 5 7 2.4467 1.5130 -2.3975 6 6 2.4138 2.1076 -3.6066 7 8 1.7632 3.1221 -3.7676 8 6 3.1633 1.5241 -4.7368 9 6 3.9168 0.3593 -4.5473 10 6 4.6059 -0.1864 -5.5893 11 6 4.5684 0.4301 -6.8556 12 6 5.2850 -0.1273 -7.9357 13 1 5.6319 0.5068 -8.7383 14 6 5.5471 -1.5045 -7.9671 15 7 4.9214 -2.3072 -7.1480 16 14 6.7908 -2.1913 -9.1798 17 1 8.1196 -1.5790 -8.9263 18 1 6.8838 -3.6639 -9.0129 19 1 6.3571 -1.8770 -10.5650 20 6 3.8133 1.6053 -7.0399 21 6 3.1233 2.1407 -5.9932 22 6 1.7478 2.0986 1.2910 23 6 3.0353 1.4676 1.8471 24 6 3.4981 1.3173 0.3883 25 1 -0.3634 0.5971 0.8364 26 1 -0.3634 0.4257 -0.9353 27 1 -0.3633 -1.0230 0.0990 28 1 2.0006 3.1324 -1.1415 29 1 0.6347 2.0439 -1.4844 30 1 2.9625 0.7014 -2.2700 31 1 3.9488 -0.1099 -3.5751 32 1 5.1836 -1.0872 -5.4433 33 1 5.1024 -3.2599 -7.1699 34 1 3.7819 2.0816 -8.0087 35 1 2.5446 3.0417 -6.1334 36 1 1.8122 3.1789 1.1605 37 1 0.8461 1.7880 1.8187 38 1 2.8719 0.5163 2.3535 39 1 3.6452 2.1580 2.4297 40 1 4.0094 0.3759 0.1872 41 1 4.0413 2.1833 0.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272458141.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:53 Heat of formation + Delta-G solvation = -65.215308 kcal Electronic energy + Delta-G solvation = -22526.088147 eV Core-core repulsion = 19177.415717 eV Total energy + Delta-G solvation = -3348.672430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37661 -40.36932 -38.84568 -36.58835 -35.65169 -35.37145 -32.15201 -31.30972 -29.35768 -28.07952 -27.39171 -26.34831 -24.07332 -23.19634 -22.68630 -21.26362 -20.45039 -19.36535 -18.70308 -17.42097 -17.27468 -16.96116 -16.43981 -16.14413 -15.92349 -15.74749 -15.32498 -15.09113 -15.03485 -14.68689 -14.41288 -13.88381 -13.77772 -13.57411 -13.31453 -13.21474 -12.84510 -12.73734 -12.63116 -12.40422 -12.34613 -12.00568 -11.77690 -11.71634 -11.37790 -11.15635 -11.14143 -10.83343 -10.41608 -10.07129 -9.58266 -9.37873 -8.75129 -6.49691 0.42431 1.13740 1.39846 1.44937 1.52750 2.11763 2.18664 2.27994 2.69949 2.79831 3.56351 3.57678 3.62993 3.68272 3.87033 4.22675 4.30120 4.32369 4.42018 4.43686 4.47755 4.49461 4.64814 4.76740 4.80602 4.87084 4.91884 5.03256 5.05164 5.05805 5.14963 5.20432 5.29360 5.36605 5.52169 5.59467 5.80810 5.93891 5.99083 6.21534 6.22599 6.54187 6.67502 6.77619 6.88230 7.40532 8.19330 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.003441 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.890176 B = 8134.843368 C = 8702.762613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.375 6.375 3 C 0.072 3.928 4 C 0.109 3.891 5 N -0.718 5.718 6 C 0.570 3.430 7 O -0.606 6.606 8 C -0.291 4.291 9 C -0.055 4.055 10 C -0.193 4.193 11 C 0.103 3.897 12 C -0.476 4.476 13 H 0.086 0.914 14 C 0.036 3.964 15 N -0.805 5.805 16 Si 0.990 3.010 17 H -0.257 1.257 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.250 4.250 21 C -0.034 4.034 22 C -0.150 4.150 23 C -0.123 4.123 24 C -0.129 4.129 25 H 0.063 0.937 26 H 0.032 0.968 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.406 0.594 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.296 0.704 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 0.709 15.234 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.294 6.294 3 C 0.032 3.968 4 C -0.015 4.015 5 N -0.369 5.369 6 C 0.364 3.636 7 O -0.491 6.491 8 C -0.295 4.295 9 C -0.074 4.074 10 C -0.212 4.212 11 C 0.099 3.901 12 C -0.504 4.504 13 H 0.104 0.896 14 C -0.182 4.182 15 N -0.429 5.429 16 Si 0.810 3.190 17 H -0.181 1.181 18 H -0.189 1.189 19 H -0.184 1.184 20 C -0.269 4.269 21 C -0.053 4.053 22 C -0.188 4.188 23 C -0.161 4.161 24 C -0.166 4.166 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.118 0.882 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.243 0.757 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.715 0.980 15.237 15.508 hybrid contribution 0.165 -0.476 -0.825 0.966 sum -2.550 0.503 14.413 14.645 Atomic orbital electron populations 1.22917 0.80087 1.03886 1.00529 1.87911 1.20991 1.25716 1.94762 1.22952 0.96963 0.84296 0.92603 1.21822 0.96136 0.97777 0.85747 1.45647 1.52230 1.30055 1.08956 1.18422 0.79484 0.82599 0.83091 1.90604 1.46258 1.27396 1.84872 1.19203 1.12909 1.02878 0.94516 1.20712 0.94983 0.93552 0.98125 1.21049 1.05111 1.02605 0.92457 1.18144 0.88099 0.90603 0.93214 1.20096 1.30202 0.93981 1.06085 0.89606 1.26930 0.96469 0.96838 0.97992 1.69749 1.33589 1.06403 1.33129 0.85123 0.78176 0.77605 0.78132 1.18139 1.18866 1.18360 1.20898 1.05574 1.02139 0.98291 1.20514 0.95680 0.97006 0.92131 1.23482 0.99935 1.00701 0.94667 1.22718 0.96415 1.01640 0.95285 1.23045 0.92798 1.03350 0.97430 0.91871 0.94941 0.88219 0.90680 0.92761 0.75696 0.86344 0.86717 0.89303 0.87616 0.87822 0.87993 0.89672 0.89640 0.89496 0.90761 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.55 113.37 1.20 1.61 16 2 O -0.37 -8.93 10.56 -148.98 -1.57 -10.50 16 3 C 0.07 1.56 0.73 -10.27 -0.01 1.56 16 4 C 0.11 3.05 5.11 86.38 0.44 3.49 16 5 N -0.72 -24.39 5.31 -466.17 -2.48 -26.87 16 6 C 0.57 24.69 7.76 86.73 0.67 25.36 16 7 O -0.61 -29.37 16.32 -3.98 -0.06 -29.43 16 8 C -0.29 -13.60 5.89 -19.93 -0.12 -13.71 16 9 C -0.05 -2.47 9.47 22.25 0.21 -2.26 16 10 C -0.19 -9.72 8.61 22.47 0.19 -9.53 16 11 C 0.10 5.40 5.56 -21.28 -0.12 5.28 16 12 C -0.48 -24.29 9.05 23.46 0.21 -24.07 16 13 H 0.09 4.17 7.88 -2.91 -0.02 4.15 16 14 C 0.04 1.68 5.22 85.35 0.45 2.13 16 15 N -0.80 -39.09 10.86 21.87 0.24 -38.86 16 16 Si 0.99 35.19 29.58 68.60 2.03 37.22 16 17 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 18 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 19 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 20 C -0.25 -12.53 9.73 22.47 0.22 -12.31 16 21 C -0.03 -1.66 9.52 22.25 0.21 -1.45 16 22 C -0.15 -2.37 7.18 31.12 0.22 -2.15 16 23 C -0.12 -1.86 8.02 31.12 0.25 -1.61 16 24 C -0.13 -2.53 7.06 31.12 0.22 -2.31 16 25 H 0.06 0.94 6.61 -2.39 -0.02 0.92 16 26 H 0.03 0.70 6.86 -2.39 -0.02 0.69 16 27 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.07 2.10 7.94 -2.39 -0.02 2.08 16 29 H 0.05 1.60 6.66 -2.39 -0.02 1.58 16 30 H 0.41 12.89 6.28 -92.70 -0.58 12.30 16 31 H 0.12 4.52 6.37 -2.91 -0.02 4.50 16 32 H 0.12 5.87 6.18 -2.91 -0.02 5.85 16 33 H 0.30 12.84 8.29 -92.71 -0.77 12.08 16 34 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.10 4.90 7.63 -2.91 -0.02 4.88 16 36 H 0.10 1.44 7.97 -2.38 -0.02 1.43 16 37 H 0.08 1.18 6.75 -2.39 -0.02 1.16 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 1.91 8.10 -2.39 -0.02 1.89 16 Total: -1.00 -62.11 337.58 2.87 -59.24 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.47 Total: 39.19 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 4.25 Total: -29.99 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -2.24 Total: -65.72 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.64 Total: -39.93 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.22 kcal Total: -62.11 2.87 -59.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272458141.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.977 kcal (2) G-P(sol) polarization free energy of solvation -62.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds