Wall clock time and date at job start Tue Mar 31 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46851 * 2 1 4 4 C 1.37098 * 119.99932 * 273.16482 * 3 2 1 5 5 H 1.08003 * 120.00124 * 180.34011 * 4 3 2 6 6 C 1.38956 * 120.00105 * 0.34821 * 4 3 2 7 7 N 1.31409 * 119.99859 * 27.29342 * 6 4 3 8 8 Si 1.86800 * 119.99702 * 207.29562 * 6 4 3 9 9 H 1.48492 * 109.47380 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46917 * 120.00155 * 8 6 4 11 11 H 1.48497 * 109.46890 * 239.99716 * 8 6 4 12 12 C 1.34775 * 119.99902 * 93.16871 * 3 2 1 13 13 O 1.21297 * 120.00035 * 185.47898 * 12 3 2 14 14 C 1.50695 * 120.00157 * 5.48278 * 12 3 2 15 15 H 1.09006 * 109.21929 * 336.65298 * 14 12 3 16 16 C 1.52728 * 109.24902 * 96.09271 * 14 12 3 17 17 C 1.53332 * 108.39857 * 171.37273 * 16 14 12 18 18 C 1.52737 * 108.37395 * 290.17970 * 17 16 14 19 19 C 1.50620 * 110.58157 * 51.12912 * 18 17 16 20 20 C 1.39397 * 117.75716 * 162.21574 * 19 18 17 21 21 O 1.35897 * 119.78924 * 359.65974 * 20 19 18 22 22 C 1.38437 * 120.42869 * 179.68727 * 20 19 18 23 23 C 1.38173 * 119.70483 * 359.68304 * 22 20 19 24 24 C 1.37962 * 119.83359 * 0.68100 * 23 22 20 25 25 C 1.37576 * 122.59199 * 342.09828 * 19 18 17 26 26 H 1.08995 * 109.47122 * 171.85578 * 1 2 3 27 27 H 1.09001 * 109.47106 * 291.85070 * 1 2 3 28 28 H 1.09000 * 109.47163 * 51.84852 * 1 2 3 29 29 H 1.08999 * 109.46824 * 240.00265 * 2 1 3 30 30 H 1.08996 * 109.46973 * 119.99958 * 2 1 3 31 31 H 0.96996 * 119.99827 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.68504 * 51.64656 * 16 14 12 33 33 H 1.09004 * 109.67995 * 291.09753 * 16 14 12 34 34 H 1.09005 * 109.68487 * 170.46077 * 17 16 14 35 35 H 1.09000 * 109.68142 * 49.89605 * 17 16 14 36 36 H 1.09007 * 109.25249 * 290.84539 * 18 17 16 37 37 H 1.08994 * 109.22784 * 171.39568 * 18 17 16 38 38 H 0.96700 * 113.99931 * 90.00079 * 21 20 19 39 39 H 1.07999 * 120.15034 * 179.97438 * 22 20 19 40 40 H 1.07998 * 120.08246 * 180.41492 * 23 22 20 41 41 H 1.08002 * 119.66762 * 179.75555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1850 2.0494 -1.1855 5 1 2.5501 3.0658 -1.1859 6 6 1.8839 1.4189 -2.3867 7 7 0.9828 0.4630 -2.4191 8 14 2.7602 1.9303 -3.9551 9 1 3.7213 3.0209 -3.6521 10 1 3.4923 0.7660 -4.5152 11 1 1.7630 2.4108 -4.9450 12 6 2.3037 1.9951 1.1654 13 8 2.6123 3.1681 1.1734 14 6 2.2396 1.2241 2.4586 15 1 1.5775 0.3673 2.3331 16 6 3.6388 0.7303 2.8204 17 6 3.5933 0.1408 4.2351 18 6 3.3883 1.2842 5.2268 19 6 2.2177 2.1383 4.8157 20 6 1.6572 2.9778 5.7770 21 8 2.1675 2.9974 7.0364 22 6 0.5836 3.7913 5.4574 23 6 0.0699 3.7745 4.1748 24 6 0.6203 2.9378 3.2259 25 6 1.6959 2.1173 3.5429 26 1 -0.3633 -1.0172 -0.1456 27 1 -0.3633 0.3825 0.9538 28 1 -0.3633 0.6348 -0.8081 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.7729 0.0227 -3.2575 32 1 4.3409 1.5637 2.7925 33 1 3.9515 -0.0375 2.1127 34 1 4.5325 -0.3685 4.4511 35 1 2.7661 -0.5648 4.3123 36 1 4.2882 1.8987 5.2579 37 1 3.2011 0.8707 6.2177 38 1 2.8731 3.6460 7.1648 39 1 0.1526 4.4396 6.2058 40 1 -0.7632 4.4115 3.9170 41 1 0.2140 2.9240 2.2253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276487356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:22 Heat of formation + Delta-G solvation = -66.317367 kcal Electronic energy + Delta-G solvation = -23918.652546 eV Core-core repulsion = 20569.932327 eV Total energy + Delta-G solvation = -3348.720219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73085 -40.19403 -38.03053 -36.92617 -36.66134 -33.86239 -32.53550 -31.26884 -31.17851 -29.45965 -27.10640 -25.02298 -23.93637 -23.75595 -23.23026 -21.01800 -20.23692 -18.83125 -18.63108 -18.16985 -17.08234 -16.88704 -16.54737 -16.19476 -15.96314 -15.60062 -15.00155 -14.83501 -14.58479 -14.54456 -14.23085 -13.91236 -13.68703 -13.42520 -13.24857 -13.06718 -12.88634 -12.76582 -12.57579 -12.41320 -12.16165 -12.11944 -12.07283 -11.83512 -11.68455 -11.56521 -11.01745 -10.76208 -10.20731 -9.75882 -9.51273 -9.40916 -8.32477 -5.79576 0.32222 0.38795 1.33279 1.42303 1.54855 2.02123 2.27433 2.63204 3.02021 3.12885 3.35381 3.62674 3.75110 3.95410 4.05581 4.11835 4.21796 4.26816 4.40001 4.42590 4.51557 4.53667 4.71264 4.83779 4.88762 4.93064 4.95019 4.98904 5.03373 5.11546 5.15005 5.28554 5.39362 5.42972 5.45561 5.51158 5.54954 5.71298 5.90555 5.94070 6.09228 6.56286 6.89015 7.21628 7.53241 8.10537 8.63418 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024842 B = 0.004849 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.855780 B = 5773.424138 C = 6029.154625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.121 3.879 3 N -0.452 5.452 4 C -0.350 4.350 5 H 0.069 0.931 6 C 0.009 3.991 7 N -0.863 5.863 8 Si 0.974 3.026 9 H -0.282 1.282 10 H -0.265 1.265 11 H -0.277 1.277 12 C 0.442 3.558 13 O -0.634 6.634 14 C -0.056 4.056 15 H 0.101 0.899 16 C -0.104 4.104 17 C -0.108 4.108 18 C -0.071 4.071 19 C -0.108 4.108 20 C 0.098 3.902 21 O -0.496 6.496 22 C -0.148 4.148 23 C -0.115 4.115 24 C -0.129 4.129 25 C -0.051 4.051 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.273 0.727 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.406 0.594 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.817 -2.921 14.306 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.001 4.001 3 N -0.170 5.170 4 C -0.477 4.477 5 H 0.087 0.913 6 C -0.194 4.194 7 N -0.501 5.501 8 Si 0.798 3.202 9 H -0.207 1.207 10 H -0.190 1.190 11 H -0.202 1.202 12 C 0.231 3.769 13 O -0.522 6.522 14 C -0.077 4.077 15 H 0.118 0.882 16 C -0.142 4.142 17 C -0.145 4.145 18 C -0.108 4.108 19 C -0.108 4.108 20 C 0.053 3.947 21 O -0.309 6.309 22 C -0.166 4.166 23 C -0.133 4.133 24 C -0.147 4.147 25 C -0.051 4.051 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.265 0.735 39 H 0.170 0.830 40 H 0.157 0.843 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.455 -2.960 14.231 14.608 hybrid contribution 0.286 0.975 -1.573 1.873 sum 1.740 -1.984 12.658 12.930 Atomic orbital electron populations 1.21925 0.95803 1.01669 0.99435 1.21597 0.95272 0.82251 1.01014 1.44087 1.55441 1.12664 1.04767 1.19525 1.44656 0.99680 0.83867 0.91288 1.25763 0.95614 0.96955 1.01099 1.70314 1.25797 1.25824 1.28175 0.85200 0.78631 0.78356 0.77996 1.20679 1.19007 1.20225 1.20453 0.83678 0.87395 0.85328 1.90470 1.55968 1.18491 1.87316 1.20124 0.99970 0.97285 0.90303 0.88152 1.21479 0.93319 1.00392 0.99014 1.21556 1.03770 0.97304 0.91889 1.20391 0.94598 0.95802 1.00008 1.20105 0.98961 1.00086 0.91687 1.18381 0.95237 0.96723 0.84333 1.84716 1.57360 1.63861 1.24948 1.21510 0.98105 1.00236 0.96750 1.21085 1.00594 0.98643 0.92945 1.21163 0.97200 0.97619 0.98733 1.19190 0.95259 0.97220 0.93456 0.91874 0.95821 0.92096 0.90115 0.91473 0.91691 0.92951 0.90717 0.88353 0.90857 0.90077 0.88672 0.73506 0.83020 0.84257 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 9.41 71.98 0.68 -4.80 16 2 C 0.12 5.33 5.04 86.38 0.44 5.77 16 3 N -0.45 -23.35 2.63 -635.53 -1.67 -25.02 16 4 C -0.35 -19.94 9.45 84.04 0.79 -19.15 16 5 H 0.07 4.33 7.31 -2.91 -0.02 4.31 16 6 C 0.01 0.47 4.98 84.93 0.42 0.89 16 7 N -0.86 -43.26 8.19 21.66 0.18 -43.08 16 8 Si 0.97 41.99 29.63 68.60 2.03 44.02 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 12 C 0.44 22.11 5.43 87.66 0.48 22.59 16 13 O -0.63 -37.10 15.48 -3.08 -0.05 -37.14 16 14 C -0.06 -2.14 1.91 -12.40 -0.02 -2.17 16 15 H 0.10 3.63 5.85 -2.38 -0.01 3.62 16 16 C -0.10 -3.31 5.24 30.62 0.16 -3.15 16 17 C -0.11 -2.48 5.98 30.62 0.18 -2.30 16 18 C -0.07 -1.68 5.28 29.74 0.16 -1.52 16 19 C -0.11 -3.29 5.75 -19.77 -0.11 -3.41 16 20 C 0.10 2.67 6.66 22.60 0.15 2.82 16 21 O -0.50 -10.37 12.52 -92.39 -1.16 -11.53 16 22 C -0.15 -4.01 9.98 22.30 0.22 -3.79 16 23 C -0.11 -3.64 10.04 22.19 0.22 -3.42 16 24 C -0.13 -5.04 8.55 22.38 0.19 -4.85 16 25 C -0.05 -1.88 5.11 -19.87 -0.10 -1.98 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 28 H 0.06 3.00 6.31 -2.39 -0.02 2.99 16 29 H 0.08 3.80 6.02 -2.39 -0.01 3.78 16 30 H 0.07 2.49 5.96 -2.39 -0.01 2.48 16 31 H 0.27 12.75 8.31 -92.71 -0.77 11.98 16 32 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 36 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.09 1.92 7.75 -2.39 -0.02 1.90 16 38 H 0.41 4.78 9.06 -74.06 -0.67 4.11 16 39 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 40 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 41 H 0.09 3.97 7.24 -2.91 -0.02 3.95 16 Total: -1.00 -69.40 325.31 3.57 -65.84 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.38 Total: 25.37 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.85 Total: -18.46 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -1.49 Total: -68.09 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -1.20 Total: -48.67 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -69.40 3.57 -65.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276487356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.482 kcal (2) G-P(sol) polarization free energy of solvation -69.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds