Wall clock time and date at job start Tue Mar 31 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47106 * 2 1 4 4 C 1.37105 * 119.99682 * 95.82224 * 3 2 1 5 5 H 1.07998 * 119.99544 * 220.06053 * 4 3 2 6 6 C 1.38942 * 119.99939 * 40.05842 * 4 3 2 7 7 N 1.31412 * 120.00129 * 24.57868 * 6 4 3 8 8 Si 1.86802 * 119.99905 * 204.57085 * 6 4 3 9 9 H 1.48499 * 109.47169 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47489 * 240.00334 * 8 6 4 11 11 H 1.48510 * 109.46832 * 120.00568 * 8 6 4 12 12 C 1.34772 * 120.00215 * 275.81977 * 3 2 1 13 13 O 1.21291 * 120.00076 * 176.41206 * 12 3 2 14 14 C 1.50701 * 120.00231 * 356.42222 * 12 3 2 15 15 H 1.09002 * 110.26806 * 24.94795 * 14 12 3 16 16 C 1.54333 * 110.30840 * 147.13607 * 14 12 3 17 17 C 1.54343 * 102.39757 * 145.28838 * 16 14 12 18 18 C 1.51387 * 105.17392 * 333.62772 * 17 16 14 19 19 C 1.38541 * 130.31816 * 197.18059 * 18 17 16 20 20 C 1.38006 * 120.28916 * 180.02562 * 19 18 17 21 21 C 1.38745 * 119.87827 * 0.02562 * 20 19 18 22 22 O 1.35898 * 120.09454 * 179.97438 * 21 20 19 23 23 C 1.42902 * 116.99659 * 359.97438 * 22 21 20 24 24 C 1.38596 * 119.81810 * 359.97315 * 21 20 19 25 25 C 1.38257 * 109.74248 * 17.20371 * 18 17 16 26 26 H 1.08996 * 109.46924 * 59.99799 * 1 2 3 27 27 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46843 * 299.99853 * 1 2 3 29 29 H 1.08997 * 109.47326 * 240.00732 * 2 1 3 30 30 H 1.08998 * 109.47421 * 120.00096 * 2 1 3 31 31 H 0.97000 * 119.99812 * 6.10757 * 7 6 4 32 32 H 1.09003 * 110.82364 * 263.52008 * 16 14 12 33 33 H 1.09008 * 110.82124 * 27.06005 * 16 14 12 34 34 H 1.08998 * 110.30095 * 214.70382 * 17 16 14 35 35 H 1.08998 * 110.38152 * 92.59883 * 17 16 14 36 36 H 1.08003 * 119.85742 * 0.02791 * 19 18 17 37 37 H 1.08002 * 120.06021 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.46977 * 180.02562 * 23 22 21 39 39 H 1.08993 * 109.47451 * 299.99478 * 23 22 21 40 40 H 1.09003 * 109.47284 * 60.00338 * 23 22 21 41 41 H 1.08006 * 119.91681 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3604 1.9874 1.1813 5 1 2.1029 3.0223 1.3515 6 6 3.0382 1.2701 2.1593 7 7 3.7653 0.2279 1.8246 8 14 2.9161 1.7874 3.9501 9 1 2.0417 2.9825 4.0616 10 1 4.2702 2.1146 4.4644 11 1 2.3388 0.6759 4.7481 12 6 2.1314 2.0561 -1.1611 13 8 2.4734 3.2198 -1.1554 14 6 1.8327 1.3649 -2.4665 15 1 1.1492 0.5314 -2.3048 16 6 1.2317 2.3649 -3.4768 17 6 1.8079 1.8665 -4.8191 18 6 3.1002 1.1646 -4.4594 19 6 4.1772 0.8070 -5.2540 20 6 5.2661 0.1633 -4.7020 21 6 5.2824 -0.1276 -3.3455 22 8 6.3521 -0.7618 -2.7974 23 6 7.4260 -1.1008 -3.6771 24 6 4.2047 0.2304 -2.5509 25 6 3.1144 0.8763 -3.1073 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9012 0.0118 0.8888 32 1 0.1432 2.3081 -3.4775 33 1 1.5676 3.3798 -3.2640 34 1 2.0068 2.7090 -5.4814 35 1 1.1176 1.1686 -5.2928 36 1 4.1648 1.0329 -6.3101 37 1 6.1039 -0.1135 -5.3248 38 1 8.2132 -1.6014 -3.1133 39 1 7.0594 -1.7667 -4.4582 40 1 7.8244 -0.1932 -4.1307 41 1 4.2160 0.0051 -1.4946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277153849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:08 Heat of formation + Delta-G solvation = -46.327641 kcal Electronic energy + Delta-G solvation = -23809.719961 eV Core-core repulsion = 20461.866562 eV Total energy + Delta-G solvation = -3347.853399 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.47354 -39.04212 -37.68271 -35.28049 -34.28836 -32.05576 -31.17282 -29.45577 -28.37646 -28.19057 -26.44373 -24.47304 -22.56761 -22.50207 -21.11880 -20.60011 -18.81983 -17.43787 -17.23085 -16.29934 -16.07272 -15.57757 -15.17794 -14.83781 -14.65058 -14.08441 -13.84638 -13.70976 -13.27393 -13.05395 -12.97205 -12.56195 -12.43418 -12.12708 -11.89444 -11.44102 -11.40488 -11.26730 -11.17021 -11.13304 -11.00187 -10.87710 -10.41427 -10.38408 -10.19077 -10.18528 -9.78150 -8.88320 -8.68878 -8.23247 -7.77953 -7.64473 -6.52089 -3.94566 1.54323 1.65638 3.35038 3.38701 3.40135 3.57750 3.79717 3.96243 4.28189 4.67647 4.73286 4.91414 4.98975 5.08227 5.15678 5.16594 5.22984 5.40328 5.46235 5.51856 5.56080 5.67514 5.74025 5.79965 5.89009 5.96952 6.05521 6.06346 6.14893 6.18710 6.35823 6.41055 6.52322 6.57211 6.60694 6.71044 6.88939 6.93325 6.95868 7.61057 8.04663 8.17472 8.74477 8.99580 9.45469 9.94359 10.71895 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.006256 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.496072 B = 4474.762978 C = 5666.832036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 N -0.450 5.450 4 C -0.396 4.396 5 H 0.080 0.920 6 C 0.009 3.991 7 N -0.877 5.877 8 Si 1.077 2.923 9 H -0.284 1.284 10 H -0.286 1.286 11 H -0.283 1.283 12 C 0.470 3.530 13 O -0.569 6.569 14 C -0.075 4.075 15 H 0.099 0.901 16 C -0.107 4.107 17 C -0.072 4.072 18 C -0.132 4.132 19 C -0.074 4.074 20 C -0.212 4.212 21 C 0.127 3.873 22 O -0.313 6.313 23 C 0.030 3.970 24 C -0.127 4.127 25 C -0.029 4.029 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.274 0.726 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 -4.683 -12.943 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.035 4.035 3 N -0.170 5.170 4 C -0.524 4.524 5 H 0.098 0.902 6 C -0.198 4.198 7 N -0.511 5.511 8 Si 0.904 3.096 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.209 1.209 12 C 0.258 3.742 13 O -0.451 6.451 14 C -0.096 4.096 15 H 0.116 0.884 16 C -0.145 4.145 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.092 4.092 20 C -0.230 4.230 21 C 0.082 3.918 22 O -0.227 6.227 23 C -0.066 4.066 24 C -0.145 4.145 25 C -0.030 4.030 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.070 -4.594 -11.166 12.074 hybrid contribution -0.182 0.198 -1.815 1.835 sum -0.112 -4.396 -12.981 13.705 Atomic orbital electron populations 1.22169 0.97274 1.00646 1.01949 1.21590 0.93265 0.86051 1.02627 1.43588 1.56436 1.11619 1.05401 1.20235 1.39422 0.99825 0.92869 0.90176 1.26378 0.91890 0.95698 1.05848 1.70696 1.30730 1.28372 1.21319 0.83388 0.76598 0.75894 0.73719 1.20968 1.21283 1.20909 1.20088 0.81799 0.87990 0.84325 1.90502 1.50912 1.17169 1.86555 1.20952 0.94319 0.98929 0.95422 0.88362 1.22283 0.99629 1.00311 0.92260 1.20955 0.93098 0.98927 0.97969 1.20482 0.96666 1.02072 0.94030 1.20257 0.92172 0.97707 0.99047 1.21012 1.00871 1.07123 0.94021 1.18753 0.87679 0.93934 0.91467 1.86131 1.26476 1.72752 1.37307 1.23007 0.88672 1.00050 0.94851 1.19970 0.91744 1.02184 1.00637 1.19940 0.93973 0.95177 0.93875 0.93586 0.92853 0.91973 0.92945 0.88940 0.91489 0.90795 0.89147 0.90946 0.90674 0.86204 0.85626 0.88423 0.92941 0.92884 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.97 37.16 0.37 -2.53 16 2 C 0.09 1.91 4.77 -4.04 -0.02 1.90 16 3 N -0.45 -11.43 2.26 -114.81 -0.26 -11.69 16 4 C -0.40 -11.23 8.80 -14.93 -0.13 -11.36 16 5 H 0.08 2.43 7.81 -52.49 -0.41 2.02 16 6 C 0.01 0.24 4.78 -17.47 -0.08 0.16 16 7 N -0.88 -24.83 12.33 55.50 0.68 -24.15 16 8 Si 1.08 24.40 29.99 -169.99 -5.10 19.31 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.47 11.69 6.47 -10.99 -0.07 11.61 16 13 O -0.57 -16.37 15.72 5.55 0.09 -16.28 16 14 C -0.07 -1.45 2.43 -91.89 -0.22 -1.67 16 15 H 0.10 1.73 5.28 -51.93 -0.27 1.46 16 16 C -0.11 -1.77 6.54 -25.33 -0.17 -1.93 16 17 C -0.07 -1.00 6.77 -26.84 -0.18 -1.18 16 18 C -0.13 -2.15 6.14 -104.17 -0.64 -2.79 16 19 C -0.07 -1.06 10.03 -39.55 -0.40 -1.46 16 20 C -0.21 -3.10 9.04 -39.48 -0.36 -3.46 16 21 C 0.13 2.24 6.68 -39.26 -0.26 1.98 16 22 O -0.31 -5.29 10.50 -19.42 -0.20 -5.50 16 23 C 0.03 0.33 9.81 101.05 0.99 1.32 16 24 C -0.13 -2.56 9.71 -39.38 -0.38 -2.94 16 25 C -0.03 -0.56 5.59 -104.21 -0.58 -1.14 16 26 H 0.05 0.77 7.19 -51.93 -0.37 0.39 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 1.04 6.62 -51.93 -0.34 0.70 16 30 H 0.09 2.19 5.86 -51.93 -0.30 1.89 16 31 H 0.27 7.83 7.35 -40.82 -0.30 7.53 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.71 7.02 -51.92 -0.36 1.34 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.13 1.44 6.31 -52.49 -0.33 1.11 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 40 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 41 H 0.13 3.01 8.06 -52.48 -0.42 2.59 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -33.58 333.39 -7.57 -41.16 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.68 Total: 5.63 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.13 Total: -13.50 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.42 Total: -35.84 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.12 Total: -21.78 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.10 Total: 19.31 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.58 -7.57 -41.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277153849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.170 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds