Wall clock time and date at job start Tue Mar 31 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47106 * 2 1 4 4 C 1.37105 * 119.99682 * 95.82224 * 3 2 1 5 5 H 1.07998 * 119.99544 * 220.06053 * 4 3 2 6 6 C 1.38942 * 119.99939 * 40.05842 * 4 3 2 7 7 N 1.31412 * 120.00129 * 24.57868 * 6 4 3 8 8 Si 1.86802 * 119.99905 * 204.57085 * 6 4 3 9 9 H 1.48499 * 109.47169 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47489 * 240.00334 * 8 6 4 11 11 H 1.48510 * 109.46832 * 120.00568 * 8 6 4 12 12 C 1.34772 * 120.00215 * 275.81977 * 3 2 1 13 13 O 1.21291 * 120.00076 * 176.41206 * 12 3 2 14 14 C 1.50701 * 120.00231 * 356.42222 * 12 3 2 15 15 H 1.09002 * 110.26806 * 24.94795 * 14 12 3 16 16 C 1.54333 * 110.30840 * 147.13607 * 14 12 3 17 17 C 1.54343 * 102.39757 * 145.28838 * 16 14 12 18 18 C 1.51387 * 105.17392 * 333.62772 * 17 16 14 19 19 C 1.38541 * 130.31816 * 197.18059 * 18 17 16 20 20 C 1.38006 * 120.28916 * 180.02562 * 19 18 17 21 21 C 1.38745 * 119.87827 * 0.02562 * 20 19 18 22 22 O 1.35898 * 120.09454 * 179.97438 * 21 20 19 23 23 C 1.42902 * 116.99659 * 359.97438 * 22 21 20 24 24 C 1.38596 * 119.81810 * 359.97315 * 21 20 19 25 25 C 1.38257 * 109.74248 * 17.20371 * 18 17 16 26 26 H 1.08996 * 109.46924 * 59.99799 * 1 2 3 27 27 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46843 * 299.99853 * 1 2 3 29 29 H 1.08997 * 109.47326 * 240.00732 * 2 1 3 30 30 H 1.08998 * 109.47421 * 120.00096 * 2 1 3 31 31 H 0.97000 * 119.99812 * 6.10757 * 7 6 4 32 32 H 1.09003 * 110.82364 * 263.52008 * 16 14 12 33 33 H 1.09008 * 110.82124 * 27.06005 * 16 14 12 34 34 H 1.08998 * 110.30095 * 214.70382 * 17 16 14 35 35 H 1.08998 * 110.38152 * 92.59883 * 17 16 14 36 36 H 1.08003 * 119.85742 * 0.02791 * 19 18 17 37 37 H 1.08002 * 120.06021 * 180.02562 * 20 19 18 38 38 H 1.09006 * 109.46977 * 180.02562 * 23 22 21 39 39 H 1.08993 * 109.47451 * 299.99478 * 23 22 21 40 40 H 1.09003 * 109.47284 * 60.00338 * 23 22 21 41 41 H 1.08006 * 119.91681 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3604 1.9874 1.1813 5 1 2.1029 3.0223 1.3515 6 6 3.0382 1.2701 2.1593 7 7 3.7653 0.2279 1.8246 8 14 2.9161 1.7874 3.9501 9 1 2.0417 2.9825 4.0616 10 1 4.2702 2.1146 4.4644 11 1 2.3388 0.6759 4.7481 12 6 2.1314 2.0561 -1.1611 13 8 2.4734 3.2198 -1.1554 14 6 1.8327 1.3649 -2.4665 15 1 1.1492 0.5314 -2.3048 16 6 1.2317 2.3649 -3.4768 17 6 1.8079 1.8665 -4.8191 18 6 3.1002 1.1646 -4.4594 19 6 4.1772 0.8070 -5.2540 20 6 5.2661 0.1633 -4.7020 21 6 5.2824 -0.1276 -3.3455 22 8 6.3521 -0.7618 -2.7974 23 6 7.4260 -1.1008 -3.6771 24 6 4.2047 0.2304 -2.5509 25 6 3.1144 0.8763 -3.1073 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9012 0.0118 0.8888 32 1 0.1432 2.3081 -3.4775 33 1 1.5676 3.3798 -3.2640 34 1 2.0068 2.7090 -5.4814 35 1 1.1176 1.1686 -5.2928 36 1 4.1648 1.0329 -6.3101 37 1 6.1039 -0.1135 -5.3248 38 1 8.2132 -1.6014 -3.1133 39 1 7.0594 -1.7667 -4.4582 40 1 7.8244 -0.1932 -4.1307 41 1 4.2160 0.0051 -1.4946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277153849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:08 Heat of formation + Delta-G solvation = -67.186830 kcal Electronic energy + Delta-G solvation = -23810.624484 eV Core-core repulsion = 20461.866562 eV Total energy + Delta-G solvation = -3348.757922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86843 -40.58110 -39.17543 -37.22496 -35.66563 -34.03577 -32.50418 -31.25770 -29.68961 -29.39360 -27.64419 -26.41356 -24.22347 -23.81907 -22.70919 -21.80139 -20.54436 -19.27940 -18.64766 -18.08223 -17.35617 -16.71203 -16.62287 -16.43510 -16.23043 -15.81212 -15.52258 -15.26451 -14.74921 -14.44308 -14.37879 -14.13151 -13.80607 -13.60004 -13.12987 -13.09796 -12.85954 -12.76992 -12.66601 -12.53203 -12.39640 -12.19971 -12.07325 -11.96493 -11.81867 -11.64679 -11.42154 -10.91678 -10.48713 -9.81523 -9.73701 -9.02065 -8.74133 -6.18364 0.24845 0.39031 1.49591 1.50893 1.78120 1.92438 2.30396 2.37913 2.65867 2.86287 3.04276 3.43118 3.61282 3.87074 3.90102 4.00647 4.06514 4.21160 4.23284 4.32505 4.35285 4.36458 4.42960 4.48109 4.56930 4.65092 4.67104 4.77269 4.87611 4.92252 4.97353 5.02576 5.08990 5.27460 5.28881 5.31562 5.33826 5.63695 5.76317 5.81061 5.91663 6.44136 6.65604 6.91033 7.37552 7.90517 8.47496 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.006256 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.496072 B = 4474.762978 C = 5666.832036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.092 3.908 3 N -0.463 5.463 4 C -0.422 4.422 5 H 0.049 0.951 6 C -0.026 4.026 7 N -0.889 5.889 8 Si 1.125 2.875 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.262 1.262 12 C 0.461 3.539 13 O -0.622 6.622 14 C -0.068 4.068 15 H 0.114 0.886 16 C -0.107 4.107 17 C -0.061 4.061 18 C -0.134 4.134 19 C -0.063 4.063 20 C -0.199 4.199 21 C 0.114 3.886 22 O -0.347 6.347 23 C 0.018 3.982 24 C -0.166 4.166 25 C -0.060 4.060 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.261 0.739 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 -5.673 -15.980 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 N -0.182 5.182 4 C -0.549 4.549 5 H 0.067 0.933 6 C -0.228 4.228 7 N -0.523 5.523 8 Si 0.945 3.055 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.186 1.186 12 C 0.251 3.749 13 O -0.508 6.508 14 C -0.089 4.089 15 H 0.131 0.869 16 C -0.145 4.145 17 C -0.097 4.097 18 C -0.134 4.134 19 C -0.080 4.080 20 C -0.217 4.217 21 C 0.069 3.931 22 O -0.262 6.262 23 C -0.076 4.076 24 C -0.185 4.185 25 C -0.060 4.060 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.473 -5.626 -14.222 15.302 hybrid contribution 0.105 0.484 -0.933 1.056 sum -0.367 -5.142 -15.155 16.008 Atomic orbital electron populations 1.22087 0.93916 1.03041 1.01957 1.21656 0.95873 0.83739 1.01878 1.43838 1.56525 1.12841 1.05034 1.20198 1.40678 0.99121 0.94938 0.93303 1.27801 0.90622 0.94969 1.09443 1.70802 1.31820 1.29264 1.20424 0.82809 0.76976 0.76512 0.69216 1.20098 1.20841 1.18633 1.21079 0.80260 0.87475 0.86094 1.90446 1.53131 1.19566 1.87676 1.20980 0.95575 0.99598 0.92754 0.86872 1.22331 1.01321 0.97712 0.93095 1.20995 0.92139 1.00155 0.96445 1.20892 0.98336 1.01574 0.92643 1.20794 0.90645 0.95582 1.01012 1.21449 1.02135 1.05522 0.92644 1.18890 0.87280 0.94276 0.92658 1.86088 1.27469 1.72792 1.39844 1.23384 0.87593 1.01335 0.95249 1.19867 0.94376 1.05332 0.98912 1.20030 0.93692 0.96617 0.95705 0.92115 0.89181 0.93390 0.91785 0.91546 0.92931 0.87957 0.92273 0.88584 0.87147 0.81541 0.81742 0.86815 0.90624 0.91499 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.97 71.98 0.72 -4.65 16 2 C 0.09 4.12 4.77 86.38 0.41 4.54 16 3 N -0.46 -24.94 2.26 -635.54 -1.44 -26.37 16 4 C -0.42 -25.44 8.80 84.04 0.74 -24.70 16 5 H 0.05 3.19 7.81 -2.91 -0.02 3.17 16 6 C -0.03 -1.48 4.78 84.92 0.41 -1.08 16 7 N -0.89 -52.92 12.33 21.66 0.27 -52.66 16 8 Si 1.12 50.57 29.99 68.60 2.06 52.63 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 12 C 0.46 24.23 6.47 87.66 0.57 24.80 16 13 O -0.62 -38.22 15.72 -3.07 -0.05 -38.27 16 14 C -0.07 -2.67 2.43 -11.61 -0.03 -2.70 16 15 H 0.11 3.95 5.28 -2.39 -0.01 3.94 16 16 C -0.11 -3.38 6.54 31.50 0.21 -3.18 16 17 C -0.06 -1.44 6.77 30.52 0.21 -1.23 16 18 C -0.13 -4.02 6.14 -19.57 -0.12 -4.14 16 19 C -0.06 -1.53 10.03 22.29 0.22 -1.31 16 20 C -0.20 -5.23 9.04 22.34 0.20 -5.03 16 21 C 0.11 4.05 6.68 22.48 0.15 4.20 16 22 O -0.35 -11.95 10.50 -92.40 -0.97 -12.92 16 23 C 0.02 0.37 9.81 113.37 1.11 1.49 16 24 C -0.17 -7.10 9.71 22.40 0.22 -6.88 16 25 C -0.06 -2.32 5.59 -19.60 -0.11 -2.43 16 26 H 0.06 1.95 7.19 -2.39 -0.02 1.93 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.67 6.62 -2.39 -0.02 2.66 16 30 H 0.07 3.32 5.86 -2.39 -0.01 3.31 16 31 H 0.26 16.03 7.35 -92.71 -0.68 15.35 16 32 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 33 H 0.06 2.25 7.02 -2.38 -0.02 2.24 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.17 2.96 6.31 -2.91 -0.02 2.94 16 38 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.08 1.18 7.67 -2.39 -0.02 1.16 16 40 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 41 H 0.08 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -81.70 333.39 5.89 -75.81 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 1.12 Total: 24.08 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.90 Total: -22.30 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -1.17 Total: -79.03 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -1.02 Total: -51.19 kcal Atomic # 14 Polarization: 50.57 SS G_CDS: 2.06 Total: 52.63 kcal Total: -81.70 5.89 -75.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277153849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.619 kcal (2) G-P(sol) polarization free energy of solvation -81.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds